Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02583 and BL02295
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:14
# Commandline: needle
# -asequence dna-align/BSNT_02583___yloI.1.5803.seq
# -bsequence dna-align/BL02295___yolI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02583___yloI-BL02295___yolI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02583___yloI-BL02295___yolI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02583___yloI
# 2: BL02295___yolI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1289
# Identity: 859/1289 (66.6%)
# Similarity: 859/1289 (66.6%)
# Gaps: 139/1289 (10.8%)
# Score: 2757.5
#
#
#=======================================
BSNT_02583___ 1 TTGCTAAACAATCGAAATGTGTTACTTTGCGTGAGCGGAGGCATCGCTGT 50
.||||.||.|||||.||..|..|.||..|.||.||||||||.|||||.||
BL02295___yol 1 ATGCTGAAAAATCGCAACATCCTGCTGGGAGTAAGCGGAGGAATCGCGGT 50
BSNT_02583___ 51 TTATAAAGCCTGTGCGTTAACAAGCAAGCTGGTTCAGGCAGGAGCAAATG 100
.||.|||||....||.|||||.||||||||.||.|||||||||||.||||
BL02295___yol 51 ATACAAAGCGGCCGCCTTAACGAGCAAGCTCGTGCAGGCAGGAGCCAATG 100
BSNT_02583___ 101 TCAAAGTGATTATGACTGAATCCGCTTGCCGATTCGTTTCACCGCTGACA 150
|.|||||.||.|||||..|||||||.||...|||.||.||.|||||.||.
BL02295___yol 101 TGAAAGTCATCATGACAAAATCCGCCTGTGAATTTGTGTCTCCGCTCACC 150
BSNT_02583___ 151 TTTCAGGCATTGAGC-----CGCCACGAAGTCTATACAGATACATTTAAA 195
|||||||| || |||.|.|||||.|||||..||||.||..||
BL02295___yol 151 TTTCAGGC-----GCTTTCGCGCAATGAAGTATATACCAATACGTTCGAA 195
BSNT_02583___ 196 GAACAAAATCCAAGCGTCATTTCTCATATTGATGCCGCAGACTGGGCCGA 245
||||..|||||..|.|||||..|.|||||.|||||||||||.|||||.||
BL02295___yol 196 GAACCGAATCCCCGTGTCATCGCCCATATCGATGCCGCAGATTGGGCGGA 245
BSNT_02583___ 246 -CTTGATTATCGTAGCGCCGGCTACGGCTAATGTGATTGGAAAACTGGCA 294
||.| |.|||||.||.|||||||||||.||||||||.||||||||.||.
BL02295___yol 246 TCTCG-TGATCGTTGCTCCGGCTACGGCCAATGTGATCGGAAAACTCGCC 294
BSNT_02583___ 295 AACGGCATCGCTGATGATATGCTGACGACAACATTGTTGGCAGCAACGGC 344
...|||||||||||.||.|||||||||||.||..|.|||||..|.||.||
BL02295___yol 295 TCAGGCATCGCTGACGACATGCTGACGACGACGCTTTTGGCGACGACAGC 344
BSNT_02583___ 345 TCCCGTTTGGATCGCGCCGGCGATGAACGTTCATATGTATGACCACCCGG 394
.||.||.||||||||.|||||||||||||||||||||||.||||||||||
BL02295___yol 345 GCCGGTGTGGATCGCTCCGGCGATGAACGTTCATATGTACGACCACCCGG 394
BSNT_02583___ 395 CAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATCGTTTTATT 444
|.||..|.||.|||||....||||||||..|.|||||.||.||.|||||.
BL02295___yol 395 CCGTTCAGCGGAACATCAGCGTTCTTTACAAAGACGGCTACCGGTTTATC 444
BSNT_02583___ 445 GAGCCAAGTGAGGGCTATTTAGCATGCGGTTACGTAGGAAAAGGCAGATT 494
||.||.|||||.|||||..|.||.|||||.||..|.||.|||||||||.|
BL02295___yol 445 GAACCGAGTGAAGGCTACCTTGCGTGCGGCTATATCGGCAAAGGCAGACT 494
BSNT_02583___ 495 GGAAGAGCCGGAAAACATCGTAAAGCTGGCCGAAAAACATTTT----GCT 540
|||||||||.||....|||||..||.||||.||.....||||| ||
BL02295___yol 495 GGAAGAGCCTGAGCGGATCGTCCAGTTGGCAGAGTCGTATTTTTCAAGC- 543
BSNT_02583___ 541 GAAGAAACATCCGC----TCCTTTAGAAGGCAAGCATGTGGTCATTACAG 586
|||.||| || |.||| |||||.||||..||.||.|||||||
BL02295___yol 544 GAAAAAA-----GCGGTTTGCTT--GAAGGAAAGCGCGTCGTAATTACAG 586
BSNT_02583___ 587 CCGGCCCAACGCGGGAAGCGGTTGATCCCGTCCGGTTTTTTACCAATAAA 636
|.||.||.||..|.|||...||.|||||||||||.|||||..||||....
BL02295___yol 587 CGGGGCCGACAAGAGAACAAGTCGATCCCGTCCGCTTTTTCTCCAACCGT 636
BSNT_02583___ 637 TCGACGGGCAAAATGGGCTACGCATTAGCGGAGGCTGCTGTTCAGCTCG- 685
|||||.||.|||||||||||.||.||.||.||||..| |.||.||
BL02295___yol 637 TCGACAGGGAAAATGGGCTATGCTTTCGCTGAGGAAG-----CGGCACGA 681
BSNT_02583___ 686 ------GCGCACGGGTAACCTTAATTTCTGGGCCTGTTTCACTTGATCAG 729
|||||| ||.||..|.|||.|.||.||....||.||||||.|.
BL02295___yol 682 ATGGGAGCGCAC--GTGACGCTGATTGCAGGCCCGACATCGCTTGATGAT 729
BSNT_02583___ 730 CCTAAAGGCCTTGCT-GAGTTTATCCCTGTTCAATCGGCTGCGGATATGC 778
||...||| |.| ||..|.||.|.||||||.||.||.|..||||||.
BL02295___yol 730 CCCGCAGG----GGTCGACGTGATTCATGTTCAGTCCGCAGAAGATATGT 775
BSNT_02583___ 779 GCGAAGCTGTGCTCTCTGTGTATGACGCAAGTGATATAGTCATTAAAACA 828
...||||.|..||.|||||.|..||.|..||.||.||.||||||||||||
BL02295___yol 776 ATCAAGCGGCTCTGTCTGTTTTCGATGAGAGCGACATCGTCATTAAAACA 825
BSNT_02583___ 829 GCTGCGGTAGCCGATTTTACGCCGAAAACA-GTATTTGACCATAAAATGA 877
||.||.||.||.||||..|.||| |||||| ||....||.||.|||||||
BL02295___yol 826 GCAGCTGTCGCTGATTACAGGCC-AAAACATGTCCACGATCAAAAAATGA 874
BSNT_02583___ 878 AAAAACAAGACGGCGGC-------ATGACCTTAGAATTGAAAAGAACAGT 920
|.|||.|.||||||||| .|||.||| ||||.|.
BL02295___yol 875 AGAAAAAGGACGGCGGCCTCGTCATTGAGCTT-----------GAACGGA 913
BSNT_02583___ 921 C----GATATTTTGAAAGAATTGGGCGA--GAAAAAGAAAGAGCAGATTT 964
| ||||||||.||||...||||.|| |.||||.|| ||||.||.|
BL02295___yol 914 CGAAGGATATTTTAAAAGCGCTGGGAGAGCGGAAAACAA--AGCAAATCT 961
BSNT_02583___ 965 TGGTCGGATTTGCCGCCGAAACACAAGACATTGAACACTATGC---ACGT 1011
|||||||.|||||.||||||||.||..||.|.|||.||||||| ||
BL02295___yol 962 TGGTCGGCTTTGCAGCCGAAACGCAGCACGTCGAAGACTATGCCAAAC-- 1009
BSNT_02583___ 1012 AAAAAGCTCGCCGCTAAAAACCTTGATTTGATTGTGGCAAATGATGTGAA 1061
|||||||.|...|.|||||.||.|||.|||||||.||.||..||.|.|.
BL02295___yol 1010 -AAAAGCTGGAGACGAAAAATCTCGATATGATTGTCGCTAACAATATCAC 1058
BSNT_02583___ 1062 AGCAAATGGGGCCGGTTTTGGTGCTGATACGAATATCGTGACAATCTTT- 1110
.||..|.||.|||||||||||..|.||.||.||.||||||||..|.|||
BL02295___yol 1059 GGCTGAAGGCGCCGGTTTTGGAACGGAAACCAACATCGTGACGGTGTTTC 1108
BSNT_02583___ 1111 --------TTC--AAAGACGG-GCATAAACGCGAACTCCCGATTATGTCT 1149
|.| |||||||| |||| ||..|.|||||.
BL02295___yol 1109 ATCGAGACTGCAAAAAGACGGCGCAT------------CCTCTAATGTCA 1146
BSNT_02583___ 1150 AAGCTCGATGTTTC--------TTTTGAAATCCTTCAGGAGATCGCAGAC 1191
||||..||.|||.| |.|||| ||||...|||.||.
BL02295___yol 1147 AAGCGGGAGGTTGCCGCCGCAGTCTTGA--------AGGAAGCCGCTGAG 1188
BSNT_02583___ 1192 CTCTCAAAACAAACCGGA--GAGCG-------CTCATGA 1221
|| ..||||| ||||| .||||||
BL02295___yol 1189 CT---------TGCCGGACGGAGCGGGACGTCTTCATGA 1218
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