Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02576 and BL02290
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:13
# Commandline: needle
# -asequence dna-align/BSNT_02576___yloB.1.5803.seq
# -bsequence dna-align/BL02290___yloB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02576___yloB-BL02290___yloB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02576___yloB-BL02290___yloB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02576___yloB
# 2: BL02290___yloB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2780
# Identity: 1984/2780 (71.4%)
# Similarity: 1984/2780 (71.4%)
# Gaps: 214/2780 ( 7.7%)
# Score: 6829.5
#
#
#=======================================
BSNT_02576___ 1 ATGAAGTTTCATGAAATGGGACAAACAGATTTACTAGAGGCAACCAATAC 50
|||||.|..||.||.|||||||||||.||.||..||.|...|||.||.||
BL02290___ylo 1 ATGAAATGGCACGAGATGGGACAAACCGAATTGTTAAATATAACAAAAAC 50
BSNT_02576___ 51 GTCCAT-GAAACAAGGATTAACAGAAAAAGAGGTAAAAAAACGCCTTGAC 99
|||||| ||.| ||||..|||||||||||||||....|||.||.||.||
BL02290___ylo 51 GTCCATCGACA-AAGGTCTAACAGAAAAAGAGGCCGGAAAGCGGCTGGA- 98
BSNT_02576___ 100 AAG-CATGGACCAAACGAGCTGCAAGAAGGGAAAAAAACTTCAGCGCTTC 148
||| ||.|||.|||||||.||.||.||||||.|||||||.||.||| .||
BL02290___ylo 99 AAGACACGGAACAAACGAACTTCAGGAAGGGGAAAAAACATCGGCG-GTC 147
BSNT_02576___ 149 TC-TTGTTTTTCGCGCAGTTCAAAGATTTTATGGTGCTTGTGCTTCTGGC 197
.| ||||||||..|.||.|||||||||||.|||||.|||||..|.||.||
BL02290___ylo 148 GCATTGTTTTTTTCTCAATTCAAAGATTTCATGGTTCTTGTTTTGCTTGC 197
BSNT_02576___ 198 GGCAACGTTAATCTCAGGTTTTCTTGGTGAATATGTAGATGCGGTTGCGA 247
|||.|||||.||.||.|||||.||.||.|||||..|.||.||..|.||||
BL02290___ylo 198 GGCCACGTTGATTTCGGGTTTCCTCGGCGAATACATTGACGCCATCGCGA 247
BSNT_02576___ 248 TTATTGCGATTGTGTTTGTGAATGGCATACTCGGTTTCTTTCAAGAAAGG 297
|.||.|||||..|.|||||.||.|||||.|||||.||||||||.||.|||
BL02290___ylo 248 TCATCGCGATCATCTTTGTTAACGGCATTCTCGGATTCTTTCAGGAGAGG 297
BSNT_02576___ 298 CGTGCTGAGCAA--TCTCTTCAGGCTTTAAAAGAGCTTTCAACACCGCAT 345
||.||.|| || ||.||..|||||||.|||||.||.|||.|.||.||.
BL02290___ylo 298 CGGGCGGA--AAGGTCGCTCGAGGCTTTGAAAGAACTGTCAGCTCCTCAA 345
BSNT_02576___ 346 GTCATGGC---ACTCAGAGAAGGAAGCTGGACAAAGATTCCTTCTAAGGA 392
| |||| .|||.|.||.||.|..|||...||.||||||||.||.||
BL02290___ylo 346 G---TGGCTGTGCTCCGGGAGGGGAATTGGGTGAAAATTCCTTCCAAAGA 392
BSNT_02576___ 393 ACTGGTGCCGGGTGATATTGTGAAATTTACGAGCGGGGACAGAATTGGCG 442
.||.||.|||||.|||.||||....|||.|.|||||.||||||||.||||
BL02290___ylo 393 GCTTGTCCCGGGAGATGTTGTCCGTTTTGCAAGCGGAGACAGAATCGGCG 442
BSNT_02576___ 443 CAGACGTTCGAATTGTTGAAGCAAGAAGCCTTGAAATAGAAGAATCAGCG 492
|.||..|..||.||||.||..|||..||||||||||||||||||||.||.
BL02290___ylo 443 CCGATCTCAGACTTGTCGAGACAAAGAGCCTTGAAATAGAAGAATCGGCC 492
BSNT_02576___ 493 CTGACCGGGGAATCAATCCCGGTTGT-GAAGCATGCTGATAAATT----G 537
||.||.||.|||||..||||.| ||| .||.||.||.|||...|| |
BL02290___ylo 493 CTTACAGGTGAATCGCTCCCCG-TGTCCAAACAGGCAGATGCTTTTCAGG 541
BSNT_02576___ 538 AAAAAACCG---GATGTTTCACTTGGCGATATTACCAATATGGCATTTAT 584
|| |||||.||.||.||||||.|.|..||||||||.||.||
BL02290___ylo 542 -------CGTCAGATGTATCGCTGGGCGATCTGAAGAATATGGCTTTCAT 584
BSNT_02576___ 585 GGGTACGATTGTGACCCGCGGCAGCGGTGTGGGGGTTGTCGTCGGGACAG 634
|||.|||.||||.||..|.||.|||||..|.||.||.|||.||||.||.|
BL02290___ylo 585 GGGAACGCTTGTCACAAGGGGGAGCGGAATCGGCGTCGTCATCGGTACGG 634
BSNT_02576___ 635 GAATGAATACGGCTATGGGGAAAATTGCCGACATGCTTGAATCGGCAGGG 684
|.|||||..|.||.|||||||||||.|||||.|||||||||||.||.|||
BL02290___ylo 635 GTATGAACTCTGCGATGGGGAAAATCGCCGATATGCTTGAATCTGCCGGG 684
BSNT_02576___ 685 ACAT-TGTCAACCCCGCTGCAAAGAAGACTGGAGCAGCTCGGGAAGATTT 733
| || .|.|.|||||||||||||||||.||.||..|||||||.||.||||
BL02290___ylo 685 A-ATACGGCGACCCCGCTGCAAAGAAGGCTTGAAGAGCTCGGCAAAATTT 733
BSNT_02576___ 734 TGATTGTTGTTGCATTGCTTTTGACCGTACTTGTCGTTGCTGTCGGTGTT 783
|||||||.|..||.|||.|..||||..|.|||||||||||||.|||.||.
BL02290___ylo 734 TGATTGTCGCCGCTTTGTTCCTGACACTGCTTGTCGTTGCTGCCGGCGTC 783
BSNT_02576___ 784 ATTCAGGGTCATGATCTGTACAGTATGTTTTTAGCAGGTGTCTCGTTAGC 833
||||||||.||||||.|.|||||.|||||||||||.||.||.||..|.||
BL02290___ylo 784 ATTCAGGGGCATGATTTATACAGCATGTTTTTAGCGGGAGTTTCCCTTGC 833
BSNT_02576___ 834 GGTAGCTGCTATTCCGGAGGGGCTGCCGGCGATTGTGACAGTGGCGCTTT 883
.||.|||||.||.||.||.||||||||.||.|||||.||.||.||.||.|
BL02290___ylo 834 CGTCGCTGCCATACCTGAAGGGCTGCCTGCCATTGTCACGGTCGCTCTGT 883
BSNT_02576___ 884 CGCTTGGTGTACAGCGGATGATTAAACAAAAATCCATTGTTAGAAAGCTT 933
|.||.||.||.|||||||||||.|..|||||.||.||.||.||.|||||.
BL02290___ylo 884 CTCTCGGCGTGCAGCGGATGATCAGGCAAAAGTCGATCGTCAGGAAGCTG 933
BSNT_02576___ 934 CCTGCTGTTGAAACGCTTGGGTGTGCGTCTATCATTTGTTCAGATAAAAC 983
||.||.|||||.|||||.||.||.|||||.||.|||||.||.||||||||
BL02290___ylo 934 CCCGCGGTTGAGACGCTCGGCTGCGCGTCCATTATTTGCTCCGATAAAAC 983
BSNT_02576___ 984 AGGGACAATGACCCAAAACAAAATGACGGTGACACATGTCTGGTCCGGAG 1033
.|||||.|||||.||.||||||||||||||.||.|||||||||||.||.|
BL02290___ylo 984 CGGGACGATGACGCAGAACAAAATGACGGTCACCCATGTCTGGTCAGGCG 1033
BSNT_02576___ 1034 GGAAAACATGGAGAGTGGCAGGGGCCGGCTATGAACCGAAAGGAAGCTTC 1083
||||.|.|||||..|||.|||||..|||||||||.||..||||....|||
BL02290___ylo 1034 GGAAGATATGGAACGTGTCAGGGATCGGCTATGAGCCTGAAGGCTCTTTC 1083
BSNT_02576___ 1084 A-CACTAAACGAAAAAGAGATCAATGT-----CAATG-AACATAAGCCGC 1126
| || |.||| |.|..|.|||| |||.| |.|||||.||||
BL02290___ylo 1084 AGCA-TGAAC------GGGCGCGATGTGCAAGCAAAGCATCATAAACCGC 1126
BSNT_02576___ 1127 TTCAGCAGATGCTTCTGTTCGGAGCGCTTTGTAA--CAAC-TCCAATATT 1173
|.||||||.|.||..|||||||.||..|.||.|| ||.| ||.|.|||.
BL02290___ylo 1127 TCCAGCAGGTACTATTGTTCGGCGCATTATGCAATTCATCTTCGATTATC 1176
BSNT_02576___ 1174 GAGAAAAGAGACGGCGAATAT-GTGCTTGACGGAGATCCGACAGAGGGAG 1222
| |||.||||||.||.|.| || |||||.||.|||||.||.||.||.|
BL02290___ylo 1177 G---AAAAAGACGGGGAGTTTCGT-CTTGATGGCGATCCCACCGAAGGGG 1222
BSNT_02576___ 1223 CGCTGCTCACCGCGGCAAGAAAAGGCGGTTTT----TCAAAGGAGTTTGT 1268
|..||||.||.|||||..||||||..||.||| .|||| |.|||
BL02290___ylo 1223 CTTTGCTGACGGCGGCTCGAAAAGCAGGCTTTACGGACAAA----TATGT 1268
BSNT_02576___ 1269 TGA--------ATCAAACTACCGGGTGATCGAAGAATTTCCGTTTGATTC 1310
||| .|.||| |.|||||.||.||||||||||||||
BL02290___ylo 1269 TGATGAACATTTTAAAA--------TCATCGAGGAGTTTCCGTTTGATTC 1310
BSNT_02576___ 1311 TGCACGGAAAATGATGACTGTCATCGTAGAGGATCAAGA-CAGAAAGCGC 1359
..|.||||||||||||.|||||||.||.||.|| ||||| |.|.||||||
BL02290___ylo 1311 AACGCGGAAAATGATGTCTGTCATTGTGGAAGA-CAAGAGCGGCAAGCGC 1359
BSNT_02576___ 1360 TATATCATTACAAAAGGTGCACCGGATGTACTGATGCAGCGATCTTCCCG 1409
|.|.||||||||||.||.||.|||||||||.|||||.||||.||.||.|.
BL02290___ylo 1360 TTTGTCATTACAAAGGGCGCGCCGGATGTATTGATGAAGCGTTCGTCGCA 1409
BSNT_02576___ 1410 TATTTATTATGACGGCT----------CAGCG-GCTCTTTTTTCAAATGA 1448
|| .||| .|||| |...|.||..||||.||
BL02290___ylo 1410 TA-----------CGCTGACAGAAGAAAAGCGAGAAATCTTCACAAAGGA 1448
BSNT_02576___ 1449 AAGAAAAGCAGAAACA---GAGGCGGTATTAAGACA-TTTGGCATCACAG 1494
|||....||.|||||| |.||||.| .||.| |.|.||.||||||
BL02290___ylo 1449 AAGGCTCGCTGAAACAAGCGCGGCGCT----GGAAACTCTTGCGTCACAG 1494
BSNT_02576___ 1495 GCGCTCAGAACGATAGCGGTCGCCTACAGGCCGATAAAAG---CAGGCGA 1541
|||||.||||||||.||.|||||.||.|..|||||.|||| || ||
BL02290___ylo 1495 GCGCTGAGAACGATTGCCGTCGCGTATAAACCGATCAAAGATACA---GA 1541
BSNT_02576___ 1542 AA---CACCG-TCAATGGAGCAGGCGGAAAAAGACCTGA-CCATGCTT-- 1584
|| |.||| || ||||||| |.|| .||.||||
BL02290___ylo 1542 AAATCCCCCGCTC-------------GAAAAAG--CGGAGTCAGGCTTAA 1576
BSNT_02576___ 1585 --------GGCCTTTCAGGTATCATTGATCCCCCGCGGCCGGAAGT-CAG 1625
||.||.|.|||.||.||.|||||.||||||||.||||| .|.
BL02290___ylo 1577 CTTTCATCGGGCTGTTAGGGATGATCGATCCGCCGCGGCCCGAAGTGAAA 1626
BSNT_02576___ 1626 ACAGGCGATAAAAGAATGCCGTGAAGCAGGAATTAAGACCGTTATGATAA 1675
||| |||||.|||||||||||.|||||.||.||.||.||.||.|||||.|
BL02290___ylo 1627 ACA-GCGATTAAAGAATGCCGGGAAGCGGGGATCAAAACGGTCATGATCA 1675
BSNT_02576___ 1676 CAGGTGATCATGTAGA-AACCGCTAAAGCGATAGCGAAAGA------CTT 1718
|.||.||.||||| || |||.||.|..|||||.||.||||| .||
BL02290___ylo 1676 CCGGGGACCATGT-GATAACGGCGACGGCGATTGCAAAAGATCTCGGATT 1724
BSNT_02576___ 1719 GC-GCCTCCTTCCGAAAAGCGGCAAAATCATGGACGGCAAGATGCTGAAT 1767
|| |||||| ..||||.||..|||||||||||.||||||||||.
BL02290___ylo 1725 GCTGCCTCC-------GCGCGGAAAGGTCATGGACGGCCAGATGCTGAAC 1767
BSNT_02576___ 1768 GAACTTTCTCAAGAAGAGCTTTCTCATGTGGTGGAGGATGTTTATGTATT 1817
|||||.||.||.|||||..|..|..|..|.||.||.||||||||.|||||
BL02290___ylo 1768 GAACTCTCGCAGGAAGAATTGGCGGAAATTGTTGACGATGTTTACGTATT 1817
BSNT_02576___ 1818 TGCCCGCGTTTCCCCTGAACATAAACTAAAAATCGTAAAAGCCTATCAGG 1867
|||..|.||.||.||.||||||||.||.||.|||||.|..|||||.||||
BL02290___ylo 1818 TGCAAGGGTGTCGCCCGAACATAAGCTGAAGATCGTGACCGCCTACCAGG 1867
BSNT_02576___ 1868 AGAACGGGCATATTGTGGCGATGACGGGAGACGGCGTCAATGATGCTCCT 1917
|.|||||.||.||.||.||.||||||||||||||.|||||||||||.|||
BL02290___ylo 1868 AAAACGGCCACATCGTCGCCATGACGGGAGACGGAGTCAATGATGCCCCT 1917
BSNT_02576___ 1918 GCCATTAAACAAGCTGATATCGGCGTCTCTATGGGCATTACCGGGACAGA 1967
||.||||||||.||.|||||||||.|.||.|||||.|||||.||.||.||
BL02290___ylo 1918 GCGATTAAACAGGCGGATATCGGCATATCGATGGGGATTACGGGAACGGA 1967
BSNT_02576___ 1968 TGTGGCCAAAGAAGCATCATCTCTTGTTCTCGCAGATGATAATTTTGCGA 2017
|||.|||||.||.||.||.||.||..|.||.|..||||||||||||||.|
BL02290___ylo 1968 TGTCGCCAAGGAGGCGTCCTCACTCATCCTTGTCGATGATAATTTTGCAA 2017
BSNT_02576___ 2018 CGATTAAATCAGCGATAAAAGAAGGCAGGAACATCTACGAAAATATCAGG 2067
||||||||||.||.||.||.|||||..|.||.|||||.||||||||.||.
BL02290___ylo 2018 CGATTAAATCGGCCATCAAGGAAGGACGCAATATCTATGAAAATATTAGA 2067
BSNT_02576___ 2068 AAGTTTATCAGATACCTGTTGGCGTCTAACGTCGGAGAAATCCTTGTCAT 2117
|||||.|||||||||.||.|.||.||.||.|||||.|||||..|.|||||
BL02290___ylo 2068 AAGTTCATCAGATACTTGCTCGCATCCAATGTCGGCGAAATTTTGGTCAT 2117
BSNT_02576___ 2118 GCTGTTTGCGATGCTGCTCGCCCTTCCTTTACCGCTCGTTCCGATTCAGA 2167
|||||||||.|||||||||||.||.||..|.|||||.||.|||||.||||
BL02290___ylo 2118 GCTGTTTGCAATGCTGCTCGCTCTGCCGCTGCCGCTTGTCCCGATACAGA 2167
BSNT_02576___ 2168 TTTTGTGGGTCAACTTGGTGACGGACGGATTGCCGGCAATGGCGCTCGGC 2217
||.|||||||||||.|.||.||||||||..||||.||.||||||||||||
BL02290___ylo 2168 TTCTGTGGGTCAACCTTGTAACGGACGGCCTGCCTGCCATGGCGCTCGGC 2217
BSNT_02576___ 2218 ATGGATCAGCCGGAAGGA-GACGTCATGAAGCGCAAGCCCCGTCATCCGA 2266
|||||||||||.| |||| ||.||.|||.||.|.|||||.||...|||||
BL02290___ylo 2218 ATGGATCAGCCTG-AGGACGATGTGATGCAGAGAAAGCCGCGGAGTCCGA 2266
BSNT_02576___ 2267 AAGAAGGGGTATTTGCCCGCAA----GCTAGGATGGAAGGTCGTTTCCAG 2312
|||||||.||.||| |||| |||.||.|||||||||||.||..|
BL02290___ylo 2267 AAGAAGGCGTGTTT----GCAAGGGGGCTCGGCTGGAAGGTCGTATCGCG 2312
BSNT_02576___ 2313 AGGATTTTTAATCGGAGTTGCCACTATTTTAGCGTTTA---TCATTGTAT 2359
.|||||.|||||||||.|.||.||..|....||||||| ||||| |||
BL02290___ylo 2313 CGGATTCTTAATCGGAATCGCGACACTCGGGGCGTTTATGTTCATT-TAT 2361
BSNT_02576___ 2360 ACCACCGCAATCCGGAA-AACTT-AGCTTATGCCCAGACGATCGCGTTTG 2407
| ||||||||||.||| ..||| || |||||.||||||.|.||.||||
BL02290___ylo 2362 A--ACCGCAATCCAGAAGCGCTTGAG--TATGCACAGACGGTTGCATTTG 2407
BSNT_02576___ 2408 CCACATTGGTTCTCGCTCAGCTTATTCACGTGTTTGACTGCCGCAGCGAA 2457
|.||..|.||.||.||.|||||.||.||||||||.||||||||.|||||.
BL02290___ylo 2408 CAACGCTCGTCCTTGCGCAGCTGATCCACGTGTTCGACTGCCGAAGCGAG 2457
BSNT_02576___ 2458 ACTTC--TGTTTTCTCTAGA----AATCCGTTTCAAAACCTGTATTTAAT 2501
...|| |.||| || |||||||||.|||||.|.|||||..|
BL02290___ylo 2458 CGGTCCATCTTT------GACCGCAATCCGTTTGAAAACATTTATTTGCT 2501
BSNT_02576___ 2502 CGGCGCGGTATTGTCATCCATTTTGCTGATGCTTGTAGTAATCTACTATC 2551
|||.||.||..||||.||.|||.|..||||||||||.||.||.||.||||
BL02290___ylo 2502 CGGTGCAGTGCTGTCTTCGATTCTTTTGATGCTTGTCGTTATTTATTATC 2551
BSNT_02576___ 2552 CGCCGCTTCAGCCGATTTTCCATACTGTAGCCAT--------CACGCCGG 2593
|||||||.|||||||||||.|||||.||..|.|| ||
BL02290___ylo 2552 CGCCGCTGCAGCCGATTTTTCATACGGTTCCGATTTTAATGGCA------ 2595
BSNT_02576___ 2594 GGGACTGGATGCTCGTCATCGGTATGTCCGCCATCCCTACTTTTTTGCTG 2643
||||||.|.||..|..||||.|||||.||.||.||.||||||||.|||
BL02290___ylo 2596 --GACTGGCTCCTGATTGTCGGAATGTCGGCGATTCCAACTTTTTTACTG 2643
BSNT_02576___ 2644 GCGGGGTCACTTTTAACAAGAAAAAAATAA 2673
||.|||||||||||.||||||||||||||.
BL02290___ylo 2644 GCCGGGTCACTTTTGACAAGAAAAAAATAG 2673
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