Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02561 and BL02278
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:12
# Commandline: needle
# -asequence dna-align/BSNT_02561___pyrD.1.5803.seq
# -bsequence dna-align/BL02278___pyrD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02561___pyrD-BL02278___pyrD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02561___pyrD-BL02278___pyrD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02561___pyrD
# 2: BL02278___pyrD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 958
# Identity: 728/958 (76.0%)
# Similarity: 728/958 (76.0%)
# Gaps: 44/958 ( 4.6%)
# Score: 2779.0
#
#
#=======================================
BSNT_02561___ 1 ATGCTAGAGGTGAAATTGCCGGGACTTGATTTGAAAAACCCAATCATTCC 50
|||||.||..|.||.||||||||.|||.|.||||||||.||.|||||.||
BL02278___pyr 1 ATGCTTGAAATCAATTTGCCGGGCCTTCAATTGAAAAATCCGATCATGCC 50
BSNT_02561___ 51 TGCATCAGGCTGCTTCGGTTTTGGAAAAGAATTTTC--ACGTTTTTATGA 98
.||.||||||||||||||.||.||.|.|||||||.| || |||||.||
BL02278___pyr 51 GGCCTCAGGCTGCTTCGGATTCGGGAGAGAATTTGCGAAC--TTTTACGA 98
BSNT_02561___ 99 TTTGTCTTGTCTTGGAGCCATCATGATTAAGGCTACGACAAAGGAGCCAC 148
|.|.||..||||.||.||.|||||||||||.||.|||||.|..|||||.|
BL02278___pyr 99 TCTTTCGCGTCTCGGTGCGATCATGATTAAAGCGACGACGAGCGAGCCGC 148
BSNT_02561___ 149 GCTTTGGGAATCCGACGCCGCGGGTAGCTGAGACTGGTGCTGGAATGCTC 198
||||.|||||||||||||||||.||.||.|||||....||.||.|||||.
BL02278___pyr 149 GCTTCGGGAATCCGACGCCGCGCGTCGCCGAGACGCAAGCCGGCATGCTT 198
BSNT_02561___ 199 AATGCGATCGGTCTCCAAAATCCGG-------GGC-----TGGATAGCGT 236
|||||.|||||.||.|||||||||| ||| ||||..|||
BL02278___pyr 199 AATGCCATCGGCCTGCAAAATCCGGGTTTAAAGGCTGTCATGGAACGCG- 247
BSNT_02561___ 237 GTTGCATAATGAGCTGCCGTGGCTTGAGCAGTTTGATACGCCGATCATTG 286
||| ||||||||||.||.|||||.|||||.|||||.||.|
BL02278___pyr 248 -------AAT----TGCCGTGGCTCGAACAGTTCGATACACCGATTATCG 286
BSNT_02561___ 287 CCAATGTCGCAGGTTCTCAAGTCGAGGATTATGTTGAAGTCGCAGAGCAT 336
||||||||||.||.||.||..||||||||||||||||.||.||.||..|.
BL02278___pyr 287 CCAATGTCGCCGGCTCGCAGATCGAGGATTATGTTGAGGTGGCTGAAGAA 336
BSNT_02561___ 337 ATCAGCAAAGCGCCTAATGTTCATGCTCTTGAATTGAATATTTCCTGCCC 386
||||||||||||||.||.||||||||.||.||..|||||||||||||.||
BL02278___pyr 337 ATCAGCAAAGCGCCAAACGTTCATGCGCTCGAGCTGAATATTTCCTGTCC 386
BSNT_02561___ 387 GAATGTGAAAACAGGCGGAATCGCTTTTGGCACGAATCCTGAAATGGCTG 436
.|||||||||||.||.||.|||||.||.||||||.|.||.||||||||.|
BL02278___pyr 387 CAATGTGAAAACCGGAGGCATCGCCTTCGGCACGCAGCCGGAAATGGCCG 436
BSNT_02561___ 437 CCGATTTGACAAAAGCGGTGAAAGAGGTTTCGAATGTACCCGTTTATGTG 486
.|||..||||.||||||||||||||||||.|||..||.|||||.||||||
BL02278___pyr 437 GCGAGCTGACGAAAGCGGTGAAAGAGGTTGCGAGCGTCCCCGTCTATGTG 486
BSNT_02561___ 487 AAGCTTTCTCCGAACGTGGCCAATATCACAGAAATTGCATTAGCGATCGA 536
|||||.||.||||||||.||.||.||.||.||.||.||..|.||.||.||
BL02278___pyr 487 AAGCTGTCGCCGAACGTCGCGAACATTACCGACATCGCTCTTGCCATAGA 536
BSNT_02561___ 537 GGAAGCGGGAGCGGACGGTCTTACGATGATCAACACACTAATCGGCATGA 586
.||||||||||||||||||.|.||||||||||||||.||.|||||.|||.
BL02278___pyr 537 AGAAGCGGGAGCGGACGGTTTGACGATGATCAACACGCTGATCGGGATGC 586
BSNT_02561___ 587 GACTCGATTTAAAAACCGGCAAACCGATATTAGCGAATAAAACAGGGGGA 636
|.|||||.||||||||.||.||.|||||.||.|||||.|||||.||.|||
BL02278___pyr 587 GGCTCGACTTAAAAACGGGAAAGCCGATTTTGGCGAACAAAACCGGCGGA 636
BSNT_02561___ 637 CTTTCAGGCCCTGCTGTGAAGCCGGTTGCCATTCGCATGGTGTATGAAGT 686
.|.|||||.|||||.||.||.|||||.|||||..|.||||||.|||||||
BL02278___pyr 637 TTATCAGGACCTGCCGTTAAACCGGTGGCCATCAGAATGGTGCATGAAGT 686
BSNT_02561___ 687 CAGCCAGGTGGTCAACATCCCGATTATCGGAATGGGAGGCGTGCAGACGG 736
||||||...|||||.|||.|||||.|||||.|||||.|||||.|||.|.|
BL02278___pyr 687 CAGCCAAAAGGTCAGCATTCCGATCATCGGCATGGGCGGCGTCCAGTCAG 736
BSNT_02561___ 737 CTGAAGATGCCCTGGAATTTCTTCTCGCGGGAGCAAGCGCAGTCGCTGTC 786
|.|||||||..||.||.|||.|.||.|||||.||.|||||||||||.|||
BL02278___pyr 737 CCGAAGATGTGCTTGAGTTTTTGCTGGCGGGTGCGAGCGCAGTCGCCGTC 786
BSNT_02561___ 787 GGAACAGCAAACTTTGTGAATCCTTTTGCATGTCCAGAGATTATTGAACA 836
||.||.||||||||.||.|||||.|||||.|||||.||.||.||.||
BL02278___pyr 787 GGCACGGCAAACTTCGTTAATCCGTTTGCTTGTCCCGACATCATCGA--- 833
BSNT_02561___ 837 GCTCCCATCT-------GTTTTGCGCCAATACGGCTATCAATCAATTGAA 879
|.||.| |||||.....|||||||.||.|..|| .|||||
BL02278___pyr 834 ----CGATTTGCCGCGCGTTTTAGAAAAATACGGATACCGTTC-GTTGAA 878
BSNT_02561___ 880 -GAATGCATCGGAAGGAGCTGGAATCATGAAAAACAACCTGCCCATCATC 928
||.||.|||||||||||||||||..|||||.||.|..|.||||||||||
BL02278___pyr 879 CGAGTGTATCGGAAGGAGCTGGAAGGATGAACAATACGCCGCCCATCATC 928
BSNT_02561___ 929 GCGCTTGA 936
||||||||
BL02278___pyr 929 GCGCTTGA 936
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