Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02544 and BL02264

See Amino acid alignment / Visit BSNT_02544 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:10
# Commandline: needle
#    -asequence dna-align/BSNT_02544___ylmH.1.5803.seq
#    -bsequence dna-align/BL02264___ylmH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02544___ylmH-BL02264___ylmH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02544___ylmH-BL02264___ylmH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02544___ylmH
# 2: BL02264___ylmH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 808
# Identity:     573/808 (70.9%)
# Similarity:   573/808 (70.9%)
# Gaps:          65/808 ( 8.0%)
# Score: 1906.0
# 
#
#=======================================

BSNT_02544___      1 ATGAGCGATATATATCAGCACTTCAGAAAAGACGAGCGGGCC-TTTATTG     49
                     |||||||||||.||.|||||.|||||||||||||| .|.||| |||||.|
BL02264___ylm      1 ATGAGCGATATTTACCAGCATTTCAGAAAAGACGA-AGAGCCGTTTATCG     49

BSNT_02544___     50 ATCAGGCGCTCGAATGGAAAAGAATTGTCCAGGAGCAGTACCGGATGAAG     99
                     |.|||||.||.||.|||||||||||.||...|||.|||||||||||||||
BL02264___ylm     50 ACCAGGCTCTTGAGTGGAAAAGAATCGTAGCGGAACAGTACCGGATGAAG     99

BSNT_02544___    100 CTGACCGACTTTTTAGACCCCCGAGAGCAGGTCATCCTCTCTG-CTGTTA    148
                     ||||||||.|||||.||.||.||.||.|||||.||||| .|.| ||||.|
BL02264___ylm    100 CTGACCGATTTTTTGGATCCGCGGGAACAGGTGATCCT-GCAGTCTGTCA    148

BSNT_02544___    149 CGGGACA---GGCAGATGTCGGGCTTGCCTTTTCCGGCGGCTATGACAGA    195
                     ..||.||   ||..||.||..||||||..||||.|||.||.| |..|.||
BL02264___ylm    149 TCGGTCAGTCGGACGAAGTGAGGCTTGAATTTTTCGGGGGGT-TCCCTGA    197

BSNT_02544___    196 -GCGGAGCGAAAACGGGCGATTCTGTATCCAGAGTA--------CATTAC    236
                      ||.||.|||||.|||||..|.||||..||.||.||        |.|  |
BL02264___ylm    198 GGCTGAACGAAAGCGGGCTGTGCTGTTCCCCGAATATGCCGAGCCGT--C    245

BSNT_02544___    237 TCCGGAAGTATCAGATTTTGAACTTCAGGCGT-TTAACGTTTGTTAT---    282
                     |.|.||      |||||||.|.|||||.||.| ..||     ||.||   
BL02264___ylm    246 TGCCGA------AGATTTTCAGCTTCAAGCCTGGGAA-----GTCATCTA    284

BSNT_02544___    283 ---GCTGACAAGTTTGTCTCAGTAGATCATCG-----TTCTCTGCTTGGT    324
                        ||  |.||.||||.|||..|.||.|||||     |||||.|||    
BL02264___ylm    285 CCCGC--AAAAATTTGCCTCCATCGAGCATCGCGAGCTTCTCGGCT----    328

BSNT_02544___    325 GCATTAATGGGCATAGGATTAAAGCGGCAAAAATTCGGTGACATCGTGTT    374
                      ||||.||||||||.|||||.|||||.|||||.|||||.||..|..|.||
BL02264___ylm    329 -CATTGATGGGCATCGGATTGAAGCGCCAAAAGTTCGGCGATCTGATCTT    377

BSNT_02544___    375 TTCTGAGACAGCAGTGCAATTGAT-TGTCTCAGCCGATACCGCTGATTTT    423
                     |||.||...|.||..|||.||.|| ||| ||.|..||...||||||||||
BL02264___ylm    378 TTCGGACGGAACATGGCAGTTTATCTGT-TCGGAAGAAGTCGCTGATTTT    426

BSNT_02544___    424 GTGGCTGCA--CAGCTGACCCAAGCAGGCAAAGCGGCGGTCAGCCTAGAG    471
                     ||  .|.||  ||||||||.|||...|||||.|.|...||...|||.||.
BL02264___ylm    427 GT--TTTCACCCAGCTGACACAAATCGGCAAGGTGAAAGTTTCCCTTGAA    474

BSNT_02544___    472 AAAAT--CGACTTGTCAGACCTTAACATTCC--AGCAGTTGATGTCGAAA    517
                     |||||  || ||| |||.|.|||||..|.||  |||||  ||||||||||
BL02264___ylm    475 AAAATTCCG-CTT-TCAAAGCTTAAAGTACCGGAGCAG--GATGTCGAAA    520

BSNT_02544___    518 TAAGAGATGACACGGTTTCTTCTTTAAGGCTTGACGCCGTCTGCGCCTCT    567
                     ||||.|||||.||||||||.|||||.||||||||.||..|.|||.|..|.
BL02264___ylm    521 TAAGGGATGATACGGTTTCATCTTTGAGGCTTGATGCGATTTGCTCGGCA    570

BSNT_02544___    568 ATGAGCAGGCAATCCCGCCAGAAATCACAGACGCTTGTGAAAAACGGCCT    617
                     |||||||||||||||||.||||||.|||||...|||||||||||||||||
BL02264___ylm    571 ATGAGCAGGCAATCCCGGCAGAAAGCACAGGTTCTTGTGAAAAACGGCCT    620

BSNT_02544___    618 TGTGAAAGTGAACTGGAAGGTGGTTGAAGATCCTTCATACATAGTCGCGG    667
                     .|||||||||||||||||.||..|.|||||.||||||||...|.|.||.|
BL02264___ylm    621 CGTGAAAGTGAACTGGAAAGTCATCGAAGACCCTTCATATGCACTGGCTG    670

BSNT_02544___    668 AAGGGGACATGCTGTCAATCAGAGGTTTTGGCCGGTGCAGCTTAACAAAA    717
                     |||||||.|||.|.||.|||.|.||.||||||||.|.|||..|.|.|||.
BL02264___ylm    671 AAGGGGATATGGTTTCGATCCGGGGATTTGGCCGCTTCAGAATGAAAAAC    720

BSNT_02544___    718 ATCGAAGGAAAAACCAAAAAAGACAAATGGAGAGTTACGTTTGAACGACA    767
                     ||.||.||.|||||.||.||.|.||||||||||.|.|||||||||..|||
BL02264___ylm    721 ATTGACGGCAAAACGAAGAAGGGCAAATGGAGATTGACGTTTGAAAAACA    770

BSNT_02544___    768 AAAATAG-    774
                     ||||| | 
BL02264___ylm    771 AAAAT-GA    777


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02544 and BL02264

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
