Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02543 and BL02263

See Amino acid alignment / Visit BSNT_02543 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:09
# Commandline: needle
#    -asequence dna-align/BSNT_02543___ylmG.1.5803.seq
#    -bsequence dna-align/BL02263___ylmG.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02543___ylmG-BL02263___ylmG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02543___ylmG-BL02263___ylmG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02543___ylmG
# 2: BL02263___ylmG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 287
# Identity:     190/287 (66.2%)
# Similarity:   190/287 (66.2%)
# Gaps:          31/287 (10.8%)
# Score: 575.5
# 
#
#=======================================

BSNT_02543___      1 ATGATC---CTTTATCAAGTTTT---TTCGGTTTTAAACTTATTAATCAC     44
                     ||||||   |||||||||.||||   ..||.|||||            ||
BL02263___ylm      1 ATGATCCTACTTTATCAAATTTTAAGCACGCTTTTA------------AC     38

BSNT_02543___     45 AATATACTCATTTGCCCTGATCATATATATTTTTATGTCATGGGTGCCGA     94
                     ..|.||.||.|||||.||.||.||.||.|||||||||||.||||||||.|
BL02263___ylm     39 CGTCTATTCTTTTGCGCTCATTATTTACATTTTTATGTCTTGGGTGCCTA     88

BSNT_02543___     95 GTACGAGGGAAACAGCAGTCGGGCGTTTTTTGGCTTCGATTTGTGAACCA    144
                     .|.|.||||||.|..||.||||.||..|..|.|||||..||||.||.||.
BL02263___ylm     89 ATGCAAGGGAATCTTCATTCGGCCGGGTGCTTGCTTCACTTTGCGAGCCT    138

BSNT_02543___    145 TATCTCGAACCATTCAGAAAAATCATCCCTCCGATTGCAATGCTGGATAT    194
                     |||||||||||.|||||||..|||||.||||||.|.|..|||.|.|||||
BL02263___ylm    139 TATCTCGAACCGTTCAGAAGGATCATTCCTCCGCTCGGGATGATTGATAT    188

BSNT_02543___    195 TTCACCAATCGTAGCAATACTTGTGCTTCGGTTTGC-GA--CAACCGGCT    241
                     |||.||.||.||.||.||..|.||.||....||.|| ||  ||  .||||
BL02263___ylm    189 TTCTCCGATTGTGGCGATTTTCGTCCTGAAATTCGCAGATGCA--GGGCT    236

BSNT_02543___    242 T-GTGGGGACTTTATC-GCATGAT---TGCGTTTTAA    273
                     | .||.||   ||.|| |.|||.|   .||.||||||
BL02263___ylm    237 TCTTGCGG---TTTTCAGAATGCTCGGCGCTTTTTAA    270


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