Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_02537 and BL02259

See Amino acid alignment / Visit BSNT_02537 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:09
# Commandline: needle
#    -asequence dna-align/BSNT_02537___ylmC.1.5803.seq
#    -bsequence dna-align/BL02259___ylmC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02537___ylmC-BL02259___ylmC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02537___ylmC-BL02259___ylmC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02537___ylmC
# 2: BL02259___ylmC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 248
# Identity:     192/248 (77.4%)
# Similarity:   192/248 (77.4%)
# Gaps:          16/248 ( 6.5%)
# Score: 770.0
# 
#
#=======================================

BSNT_02537___      1 ATGATCAGCATTTCAGAATTTCAGGTAAAGGATGTCGTCAATGTCTCAAA     50
                     |||||.|..|||||.||.||.|||.||||.||||||||.||.||.|||||
BL02259___ylm      1 ATGATGAATATTTCTGATTTCCAGATAAAAGATGTCGTTAACGTATCAAA     50

BSNT_02537___     51 CGGAAAAAAGCTGGGGAGTATTGGTGATATTGATATCAATGTGACCACTG    100
                     ||||||||||||.||.||.||.||.|||||.|||||.|||||.||.||.|
BL02259___ylm     51 CGGAAAAAAGCTCGGCAGCATCGGCGATATCGATATAAATGTAACGACAG    100

BSNT_02537___    101 GAAAAATTCAGGCGATCATACTCGGAGGAAATGGGAAAGTTCTCGGATTT    150
                     |.|||||.|||||||||.|..|||||||||..|||||||||.||||||||
BL02259___ylm    101 GCAAAATACAGGCGATCGTCATCGGAGGAACGGGGAAAGTTTTCGGATTT    150

BSNT_02537___    151 TTTGGAAAAGAAGAGGAATTGGTCATTCCATGGCGAAATATAGTAAAAAT    200
                     ||.|||||||||||||||.|.||||||||.|||||||||||.||.|||||
BL02259___ylm    151 TTCGGAAAAGAAGAGGAAATCGTCATTCCGTGGCGAAATATTGTTAAAAT    200

BSNT_02537___    201 CGGGGAAGATGT-AATCTTAGTCCGATTAAG-TGAACCACATGCATAA    246
                     .||.|||||||| |.|||| ||.||.||||| |||             
BL02259___ylm    201 TGGAGAAGATGTGATTCTT-GTGCGTTTAAGCTGA-------------    234


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.