Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02509 and BL02237
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:06
# Commandline: needle
# -asequence dna-align/BSNT_02509___spoVD.1.5803.seq
# -bsequence dna-align/BL02237___spoVD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02509___spoVD-BL02237___spoVD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02509___spoVD-BL02237___spoVD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02509___spoVD
# 2: BL02237___spoVD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1966
# Identity: 1483/1966 (75.4%)
# Similarity: 1483/1966 (75.4%)
# Gaps: 56/1966 ( 2.8%)
# Score: 5403.5
#
#
#=======================================
BSNT_02509___ 1 TTGCGCGTCTCGAATGTAACGGTTAGAAAACGTTTATTATTTGTTTTGCT 50
||||||||.||.|||||||||||.||||||||||||.||||.|||.||||
BL02237___spo 1 TTGCGCGTTTCCAATGTAACGGTCAGAAAACGTTTAATATTCGTTCTGCT 50
BSNT_02509___ 51 TTTTGGCGTGATCGTGTTTCTGATCATTGATACAAGGCTGGGGTATGTTC 100
||||||.||||||.|.|||.||||.||||||||||||||.||.||.||||
BL02237___spo 51 TTTTGGTGTGATCATCTTTTTGATTATTGATACAAGGCTCGGATACGTTC 100
BSNT_02509___ 101 AGTTTGTGATGGGCGAAAAACTGACTTCGCTAGCGAAAGATTCCTGGAGC 150
||||.||..|.||.||.||||||||..|..||||.||||||||.||||||
BL02237___spo 101 AGTTCGTTCTCGGGGATAAACTGACGACTTTAGCAAAAGATTCTTGGAGC 150
BSNT_02509___ 151 CGGAACTTGCCGTTTGAGCCGGAGAGAGGCGAGATTCTGGATCGGAATGG 200
||||||.|.||.|||||||||||.||.|||||.||..||||..||||.||
BL02237___spo 151 CGGAACCTTCCTTTTGAGCCGGAAAGGGGCGAAATATTGGACAGGAACGG 200
BSNT_02509___ 201 TGTGAAGCTCGCAACAAATAAAAGTGCGCCGACCGTATTCGTCGTGCCGC 250
.||.|||||.||||||||..||||.|||||..|.||.||.||.||.|||.
BL02237___spo 201 CGTCAAGCTGGCAACAAACCAAAGCGCGCCATCGGTTTTGGTTGTTCCGA 250
BSNT_02509___ 251 GCCAAGTTCAGAATCCGATGAAAACGAGCAAGCAGCTTG-CGGCGGTGCT 299
..||||||.|.||||||||.||||||||||..|.|||.| |.|| ||..|
BL02237___spo 251 AGCAAGTTGAAAATCCGATCAAAACGAGCAGACTGCTGGCCAGC-GTTTT 299
BSNT_02509___ 300 CAATATGTCAGAAGAAAAAGTATATAAACATGTGACTAAAAAAGCGTCAA 349
.||||||||.||||||||||..|||||||||||.||.||||||.||||.|
BL02237___spo 300 GAATATGTCGGAAGAAAAAGCGTATAAACATGTCACGAAAAAAACGTCGA 349
BSNT_02509___ 350 TCGAAAAGATCACTCCTGAAGGGAGAAAAATTTCAAATGAGAAGGCGAAG 399
|.||||.|||||.|||.||.||..|.||.|||||..|.|||||.||.||.
BL02237___spo 350 TTGAAAGGATCAATCCCGAGGGCCGGAAGATTTCCCACGAGAAAGCAAAA 399
BSNT_02509___ 400 GAAATTAAAGCGCTTGATTTAAAAGGTGTGTATGTTGCGGAGGACAGTAT 449
|||.|.|.||..||..||||.|||||.||.||..|.||.||.|||...||
BL02237___spo 400 GAAGTCAGAGATCTCAATTTGAAAGGCGTATACATCGCAGAAGACTCGAT 449
BSNT_02509___ 450 CCGTCATTACCCGTTCGGCAGCTTTTTATCTCATGTGCTTGGATTTGCAG 499
|||.|||||.|||||||||||||.|.|.||.||||||||.||||||||.|
BL02237___spo 450 CCGCCATTATCCGTTCGGCAGCTATCTGTCCCATGTGCTCGGATTTGCGG 499
BSNT_02509___ 500 GAATTGACAACCAAGGACTCCTTGGATTGGAAGCCTATTACGACGATGAT 549
|.|||||||||||.||.||.||.||..|.|||||||.|||.|||.|.||.
BL02237___spo 500 GCATTGACAACCAGGGTCTGCTCGGCCTTGAAGCCTTTTATGACAAAGAG 549
BSNT_02509___ 550 TTAAAAGGGGAAAAAGGTTCTGTCAAGTTTTATACAGATGCCAAGGGTAA 599
.|.||.||.|||||.||.|.|||.||.||||||.|.|||||.||.||.||
BL02237___spo 550 CTGAAGGGCGAAAAGGGCTATGTGAAATTTTATTCCGATGCAAAAGGCAA 599
BSNT_02509___ 600 AAAAATGCCTGATGAAGCGGATGACTATACGCCGCCTAAGGATGGGCTTG 649
.|.||||||||..||.||||||||||||||.|||||.||.||.|||||||
BL02237___spo 600 GAGAATGCCTGGGGAGGCGGATGACTATACCCCGCCGAAAGACGGGCTTG 649
BSNT_02509___ 650 ATATGAAGCTGACGGTTGATTCAAAGGTCCAGACGATAATGGAAAGAGAG 699
||||||||||||||.|.|||||||||||.||||||||.|||||..|.||.
BL02237___spo 650 ATATGAAGCTGACGATCGATTCAAAGGTGCAGACGATCATGGAGCGGGAA 699
BSNT_02509___ 700 CTTGATAACGCTGAGGCCAAATATCATCCGGACGGCATGATTGCCGTAGC 749
.||||||.|||.||.||.||.|||.||||||||||.|||.|.|..||.||
BL02237___spo 700 TTTGATATCGCAGAAGCGAAGTATAATCCGGACGGTATGGTCGGTGTTGC 749
BSNT_02509___ 750 CATGAATCCGAAAAACGGAGAAATTTTGGGGAT-GTCTAGCAGGCCTGAC 798
.|||||||||||||||||.||.||.||||.||| ||| |||.||||.|||
BL02237___spo 750 GATGAATCCGAAAAACGGGGAGATATTGGCGATGGTC-AGCCGGCCGGAC 798
BSNT_02509___ 799 TTCGACCCTGCTGATTACCAATCTGTTGATCCGTCCGTCTACAATCGAAA 848
||.||.||.||..|.||||||||..|.|||||....|||||.||.||.||
BL02237___spo 799 TTTGATCCCGCAAACTACCAATCAATCGATCCCAAAGTCTATAACCGGAA 848
BSNT_02509___ 849 CCTGCCAGTATGGAGCACGTATGAACCGGGATCTACCTTTAAAATTATTA 898
||||||.|||||||||||.|||||.|||||.|||||.||||||||.||.|
BL02237___spo 849 CCTGCCTGTATGGAGCACATATGAGCCGGGTTCTACTTTTAAAATCATCA 898
BSNT_02509___ 899 CACTTGCAGCAGCCCTTGAAGAGCAAAAAGTAAATTTGAAACGGGATCAA 948
|.|||||.|||||..|.||.||..|.|||||.||..|..||...||||||
BL02237___spo 899 CGCTTGCCGCAGCTTTGGAGGAAAACAAAGTCAACCTCCAAAAAGATCAA 948
BSNT_02509___ 949 TTTTATGATAAAGGGCATGCG--GAAGTGGACGGAGCGAGACTGCGGTGC 996
||.||||||||||| .|.|| |||||||||||.|||||.|||..||||
BL02237___spo 949 TTCTATGATAAAGG--TTCCGTTGAAGTGGACGGCGCGAGGCTGAAGTGC 996
BSNT_02509___ 997 TGGAAAAGAGGCGGGCACGG-GCTTCAGACGTATCTGGAAGTTGTGCAGA 1045
|||||..|.|||||.||||| || .||..|||.|||.|||||.||.||.|
BL02237___spo 997 TGGAAGCGCGGCGGACACGGCGC-ACAATCGTTTCTTGAAGTCGTCCAAA 1045
BSNT_02509___ 1046 ACTCCTGCAACCCGGGGTTTGTTGAATTAGGCGAGCGCTTAGGAAAGGAA 1095
|.||.|||||||||||.||||||||..|.||..||||..|.||.||.|||
BL02237___spo 1046 ATTCGTGCAACCCGGGATTTGTTGAGCTTGGTCAGCGGCTCGGCAAAGAA 1095
BSNT_02509___ 1096 AAGCTTTTCAAATATATCAAAGACTTT-GGTTTTGGACAAAAAACGGGGA 1144
||.||.||||..||.||.||| |.||| ||.||.|||||||||||.||||
BL02237___spo 1096 AAACTGTTCACCTACATTAAA-AGTTTCGGCTTCGGACAAAAAACCGGGA 1144
BSNT_02509___ 1145 TTGATCTCCAAGGCGAGGGAACAGGCATCTTATTCCCGCTTGAGAGAGTG 1194
|.|||||.||||||||.||||||||||||.|||||||.|||||..|.||.
BL02237___spo 1145 TCGATCTGCAAGGCGAAGGAACAGGCATCCTATTCCCTCTTGACCGCGTC 1194
BSNT_02509___ 1195 GGCCCGGTGGAGCAAGCAACTACGGCTTTCGGACAGGGAGTATCCGTCAC 1244
|||||.||.|||||.||.||.||.||||||||.|||||.|||||.||.||
BL02237___spo 1195 GGCCCCGTAGAGCAGGCGACAACAGCTTTCGGGCAGGGGGTATCGGTGAC 1244
BSNT_02509___ 1245 GCCGATTCAGCAAGTTGCAGCAGTATCCGCCGCTGTAAACGGAGGAACGC 1294
||||||.|||||.||..|.||.||.||.||.|||||.|||||.|||||||
BL02237___spo 1245 GCCGATCCAGCAGGTCACGGCCGTTTCTGCGGCTGTTAACGGCGGAACGC 1294
BSNT_02509___ 1295 TCTATACACCTTATATTGCAAAGGAATGGATCGATCCTGTTACGAAGAAA 1344
|.|||||.||.||||||||.||.||.|||||.|||||.||.||.||..||
BL02237___spo 1295 TGTATACGCCGTATATTGCCAAAGAGTGGATTGATCCCGTGACAAAACAA 1344
BSNT_02509___ 1345 ACGGTCAAAAAACAATCACCAATCGC--AAAGAAACAAGTCATTTCTGAG 1392
||.||.||||||||..|.||.||||| |||||| ||||.||||||||.
BL02237___spo 1345 ACAGTGAAAAAACAGACGCCGATCGCCAAAAGAA--AAGTGATTTCTGAA 1392
BSNT_02509___ 1393 GAAACATCCAAACAAATCCGCTATGCTCTAGAAAGCGTCGTCGCAGAAGG 1442
||.|||||||||||.||||||||.||.||.||.|||||.|||||..|.||
BL02237___spo 1393 GAGACATCCAAACAGATCCGCTACGCGCTGGAGAGCGTTGTCGCCCAGGG 1442
BSNT_02509___ 1443 AACCGGCCGCAATGCATTTGTAGAAGGATATCGTGTCGGAGGAAAAACGG 1492
.||.||.||.||.||.|||||.||.||.||.||.|||||.||.|||||.|
BL02237___spo 1443 GACGGGGCGGAACGCTTTTGTCGACGGCTACCGGGTCGGCGGCAAAACCG 1492
BSNT_02509___ 1493 GAACTGCACAAAAGGTTAAAGATGGAAAATATCTTG-AAAACAACCATAT 1541
|.||.||.|||||.||.|||||.||.|||||| ||| ||||||||||.||
BL02237___spo 1493 GTACGGCGCAAAAAGTAAAAGACGGGAAATAT-TTGAAAAACAACCACAT 1541
BSNT_02509___ 1542 TGTATCATTTATCGGTTTCGCGCCAGCTGATGATCCGAGTCTAGTCGTCT 1591
.||.|||||||||||....||.||..|.|||||||||||..|.|||||||
BL02237___spo 1542 CGTCTCATTTATCGGAACGGCTCCTTCAGATGATCCGAGCATTGTCGTCT 1591
BSNT_02509___ 1592 ACGTTGCGGTGGATAACCCGAAAGGCACGATTCAGTTTGGCGGAACGGTG 1641
||||.||.||.||.|||||||||||.||||||||.||.||.||.|||||.
BL02237___spo 1592 ACGTCGCCGTCGACAACCCGAAAGGAACGATTCAATTCGGGGGTACGGTT 1641
BSNT_02509___ 1642 GCAGCGCCTATTGTCGGAAATATTATGAGAGACAGTCTGCCGGAACTTGG 1691
||||||||.||.||||||||.||.||||||||||||||.|||.|.||.||
BL02237___spo 1642 GCAGCGCCGATCGTCGGAAACATCATGAGAGACAGTCTTCCGCAGCTCGG 1691
BSNT_02509___ 1692 TGTGAAGCTCCGGAAAAATCAAATCGAGAAAA----AATACCAATGGAAC 1737
.||.|||...||||||.||||.|||| || ||||.||||||...
BL02237___spo 1692 CGTTAAGAAGCGGAAAGATCAGATCG----AACGCGAATATCAATGGCTG 1737
BSNT_02509___ 1738 GACACAAAAAC-AATAGAAGTTCCGAATGTTGTAGGGATGTCTGTCTCAG 1786
|||| ||||.| .||.||.||.|||||..||.|||||.|.||.||..|||
BL02237___spo 1738 GACA-AAAAGCTGATCGAGGTCCCGAACCTTATAGGGCTTTCCGTGACAG 1786
BSNT_02509___ 1787 ATCTTGAGTCACTATTGGTG---AATCTCAATGTGGATGCTTCCGG-GAA 1832
|.||||| ||.||||.|| ||.||||...||.|.|||||||| |||
BL02237___spo 1787 AGCTTGA---ACCATTGCTGATCAACCTCAGGCTGAAGGCTTCCGGAGAA 1833
BSNT_02509___ 1833 AGGGA----GCAAAATCGTTAAACAATCGCC--AGCTGCCGGAACGAAAG 1876
.|.|| | |||||.|.||.||.|| |||.|...||| ||||
BL02237___spo 1834 GGCGATGTCG-----TCGTTCAGCAGTCCCCTAAGCCGGGCGAA--AAAG 1876
BSNT_02509___ 1877 TAAAAGAAGGCTCAAAGATACGCGTGTAT-TTGACTGAAGAAGATGAAAA 1925
||||||||||.||.|.|||.|||.|.||| |||||.| .|||| |.
BL02237___spo 1877 TAAAAGAAGGATCGACGATTCGCATTTATCTTGACAG----CGATG--AC 1920
BSNT_02509___ 1926 GGAGGCAGCCGATTGA 1941
||| ||..|.||||.|
BL02237___spo 1921 GGA-GCCTCTGATTAA 1935
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