Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03426 and BL02232
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:23
# Commandline: needle
# -asequence dna-align/BSNT_03426___recQ.1.5803.seq
# -bsequence dna-align/BL02232___recQ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03426___recQ-BL02232___recQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03426___recQ-BL02232___recQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03426___recQ
# 2: BL02232___recQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1673
# Identity: 998/1673 (59.7%)
# Similarity: 998/1673 (59.7%)
# Gaps: 358/1673 (21.4%)
# Score: 2754.5
#
#
#=======================================
BSNT_03426___ 1 ATGACTAAATTACAGCAAACGTTATATC----AGTTTTTTGGTTTTACTT 46
|||..||||.|.||.||..|| .|| .||.||||||||.|..|.
BL02232___rec 1 ATGGATAAACTTCATCAGGCG----CTCCGCAGGTATTTTGGTTATCATG 46
BSNT_03426___ 47 CCTTTAAAAAAGGGCAGCAGGAC-ATTATTGAAAGCATACTCAGCGGGA- 94
|.|||||||||||.|||.| .|| ||.||..|||||.|.|| .|.||||
BL02232___rec 47 CTTTTAAAAAAGGCCAGGA-AACGATCATCAAAAGCGTGCT-GGAGGGAC 94
BSNT_03426___ 95 AGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTAC 144
.|||.||..|.||.|||||.|||||.||.||.|||||||||||.|||||.
BL02232___rec 95 GGGACACGGTGGCGATGCTTCCGACAGGAGGCGGGAAATCGCTGTGCTAT 144
BSNT_03426___ 145 CAGCTGCCTGGTTATATGCTTGACGGCATGGTATTAATCGTTTCTCCACT 194
|||||.||.||...|.||.|.|||||||..||..|.|||||.||.||.||
BL02232___rec 145 CAGCTCCCAGGGCTTTTGTTAGACGGCACCGTCCTGATCGTCTCGCCGCT 194
BSNT_03426___ 195 GCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGGGAAA 244
..|.|||||||||||.||.|||||||||||..|.||....||.||.||.|
BL02232___rec 195 TTTGTCTTTAATGGAAGACCAGGTGCAGCAATTGAAGATGCGCGGAGAGA 244
BSNT_03426___ 245 AGCGTGCTGCAGCTTTGAACAGCATGCTT---AACAGGCAGGAAA----- 286
||.|.|||||.||.||||||||| |||| .||| .||.||||
BL02232___rec 245 AGAGAGCTGCCGCCTTGAACAGC--GCTTTGACACA-CCAAGAAAAAAAT 291
BSNT_03426___ 287 GACAATTTGTTTTAGAACATATTCATCGATATAAATTTTTGTACTTGTCT 336
||| ||.|||.|.|...||||.||....||||.|.|||||.|.||.
BL02232___rec 292 GAC-----GTATTAAACCGGCTTCACCGCCTCAAATATCTGTACATTTCA 336
BSNT_03426___ 337 CCTGAAGCTTTACAGTC--TCCATATG-TATTGGAAAAA--TTGAAAAGC 381
||.|||||..|.||||| .|||.||| | |||||| ||.||..||
BL02232___rec 337 CCAGAAGCGCTTCAGTCCGGCCAAATGCT----GAAAAAGCTTCAATTGC 382
BSNT_03426___ 382 GTCCCGATCAGCCTATTTGTTATTGACGAAGCGCATTGTATTTCTGAATG 431
||....|||||||.|||||..||||.|||||.||.||.||.||..||||
BL02232___rec 383 -TCAATGTCAGCCTTTTTGTCGTTGATGAAGCCCACTGCATCTCACAATG 431
BSNT_03426___ 432 GGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAAA 481
|||.||.||.|||||||||||||||||.|||||.| ||||.|..
BL02232___rec 432 GGGGCATGATTTCAGGCCTGATTATTCGAAGCTTG-------GAGACATC 474
BSNT_03426___ 482 AA-------CTTGGTCACCCGCCCGT---TCTGGCATTGACCGCCACGGC 521
|| ||.||||| .||||| ||||||..|.||.||.|||||
BL02232___rec 475 AAGGCGCTCCTCGGTCA---TCCCGTCACTCTGGCGCTTACAGCAACGGC 521
BSNT_03426___ 522 TAC------------AAAGGAAACGCTGCAAGATGTCAT----GAACCTG 555
.|| |||||| ||| ||| .|.
BL02232___rec 522 AACCGAAGCGACATTAAAGGA---------------CATTTCGGAA-ATC 555
BSNT_03426___ 556 CTGGAGCTGCAGCATGCTGTA----CGCC----ATCTCA---ACTCAGTC 594
||||.||| || |||| ||.|.| |.||.|||
BL02232___rec 556 CTGGGGCT-----------TAAAGCCGCCAATTATTTGATTCATTCGGTC 594
BSNT_03426___ 595 AACCGCCCAAACATCGCACTGAGGGTTGAAAA--TGCGGTGGATACTGCC 642
.||||.||.|||||.||.||.....||||||| ||.| |||||||||.
BL02232___rec 595 GACCGTCCGAACATTGCGCTTCATATTGAAAAGCTGAG--GGATACTGCT 642
BSNT_03426___ 643 GAAAAAATAGATAGGGTCATTCA--GCTGGTTGAAAACCTGCAAGGTCCG 690
||.||.|..||..||.|.| || |||||||.||||.|||||||||||.
BL02232___rec 643 GAGAAGACGGAGCGGCTGA--CAGGGCTGGTTCAAAAGCTGCAAGGTCCT 690
BSNT_03426___ 691 GGAATTGTTTATTGTCCGACACGGAAATGGGCCGAGGAATTAGCGGGTGA 740
||..||||||||||.|||||..|.||||||||.||.|||.| ||.|||
BL02232___rec 691 GGCCTTGTTTATTGCCCGACGAGAAAATGGGCTGAAGAACT---GGCTGA 737
BSNT_03426___ 741 AA-------TTAA-AAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGG 782
.| |.|| ||||||| |...|||.|.|..|||||.|||||
BL02232___rec 738 CAAGCTCCGTAAAGAAGCAAA-----CTTGAGAACGGGATTTTATCATGG 782
BSNT_03426___ 783 CGGTTTGGAGTCAGGGGACCGGATTTTAATTCAGCAGCAGTTTATTCATA 832
|||..|||||.||.|.|||.||||..|.||.||||||||||||||.|..|
BL02232___rec 783 CGGGATGGAGGCAAGCGACAGGATGCTGATCCAGCAGCAGTTTATCCGCA 832
BSNT_03426___ 833 ACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCGAT 882
|.||||||||||||.|.||.|||||.||.||.||.||.|||||.||.||.
BL02232___rec 833 ATCAGCTTGATGTGGTCTGCTGTACAAACGCCTTCGGTATGGGAGTGGAC 882
BSNT_03426___ 883 AAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGA 932
||.||.|||||||||||||||||.||.|||..|||||||||||||...||
BL02232___rec 883 AAGCCGGATATCAGATATGTGATCCACTTTAGCCTCCCGCAGACGATTGA 932
BSNT_03426___ 933 AGCTTTTATGCAGGAAATCGGCAGAGCGGGCCGTGATGGAAAGCCGAGTG 982
.||.|.|.|||||||||||||..|.||.|||.|.||||||||||.|||.|
BL02232___rec 933 GGCGTATCTGCAGGAAATCGGACGTGCCGGCAGGGATGGAAAGCGGAGCG 982
BSNT_03426___ 983 TCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATT 1032
||||||||||||||..|||.||.||.||....|||.|.|||||.|||.|.
BL02232___rec 983 TCAGCATTTTGCTGAAGGCTCCGGGAGACGAGGAAATCCAGGAGCAGCTG 1032
BSNT_03426___ 1033 ATCCAGATGGAGAG-----TGTCACAGCTGAAGAAATCGCCGACGTAATC 1077
||.||.||||| || |..||.||| ||.|||| .
BL02232___rec 1033 ATTCAAATGGA-AGCCCTCTCCCAAAGC----GATATCG----------G 1067
BSNT_03426___ 1078 CGTGTCCTA-GAAAAGAC--GGAGGAGCGGGATGAGA---GAAGGCT--- 1118
|.|.|..|| |||||| | |.||||| |||.| |||.|||
BL02232___rec 1068 CTTTTTATACGAAAAG-CTTGCAGGAG-----TGAAAGATGAACGCTGCC 1111
BSNT_03426___ 1119 -GCGTGACG-TATTACTTCAGTATGGCGTCGG------AGAGACACAGGC 1160
|||.||.| | ||.||| .|||| ||| .||.||.||.||
BL02232___rec 1112 GGCGGGAAGCT----CTGCAG-CTGGC--CGGTTTATCGGAAACGCAAGC 1154
BSNT_03426___ 1161 CCG----------------TATGATGA---TTCATC-TCT---------- 1180
||| ||||| || |.|||| |||
BL02232___rec 1155 CCGCCATTTTCTCCATCTTTATGA-GAAGGTGCATCATCTGGGCGGCGAT 1203
BSNT_03426___ 1181 ----------TTATGCAG-GGGAAAACATCAGTTGAACTGATGAAGAAAG 1219
|.||.||| |||| |||| ||.||
BL02232___rec 1204 GGCCGGGCGGTCATTCAGAGGGA----------------GATG--GACAG 1235
BSNT_03426___ 1220 AAATTTCATATCGCATGGAGCTGAAGCTGGAAAAA--------ATGCACC 1261
.||||.|.||||.||..||.||||| ||.|.||
BL02232___rec 1236 ----------CCGCAGGCAGCTCAAATTGAAAAAAGCGGCGGGATTCGCC 1275
BSNT_03426___ 1262 GTGTATCATTTTTGCTTCAGCG----TGACGGCTGTTTAAGGCAGGCA-- 1305
| .|.|||.|| .||.||.||||| ||||.|
BL02232___rec 1276 G------------CCGTCACCGAAACAGAAGGGTGTTT----CAGGGAAA 1309
BSNT_03426___ 1306 --CTGTTAACCTACTTCGATGAATCATACGAGC--CTGATGACG---GAA 1348
.||.|..|.||.||..|||||..|.|..||| |.||..||| |||
BL02232___rec 1310 GCTTGCTCGCTTATTTTAATGAACAAAAAAAGCCGCCGAAAACGGATGAA 1359
BSNT_03426___ 1349 ACCTCCCGTGCTGTTCACAT--TGCGGTTTTGATTTATCCTTG-----TA 1391
|| ..||||||| ||||| |||||| ||.|..|||| ||
BL02232___rec 1360 AC--AGCGTGCTG--CACATCCTGCGGT-----TTAAGTCTTGAAGCATA 1400
BSNT_03426___ 1392 TGAACTAAAAGGGGCACG---------GAGTAAAATGGCGCCATTAGACA 1432
.|||.|.|||||.|..|| ||..||| |.||||
BL02232___rec 1401 CGAAGTCAAAGGAGACCGTCCGTCTATGAACAAA----------TTGACA 1440
BSNT_03426___ 1433 GC-TGG--AGTTCGGAATTG--CACCGGATATT------CAGCTTGCAGA 1471
|| ||| || ..|||||| .||| ||||| |||||
BL02232___rec 1441 GCGTGGGAAG--AAGAATTGGATACC--ATATTTGCCGCCAGCT------ 1480
BSNT_03426___ 1472 CTGTAGGTGAGC-TGAA--CTGA 1491
||||.| ||.| ||||
BL02232___rec 1481 ------GTGATCGTGTATGCTGA 1497
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