Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03423 and BL02229
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:22
# Commandline: needle
# -asequence dna-align/BSNT_03423___ypbF.1.5803.seq
# -bsequence dna-align/BL02229.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03423___ypbF-BL02229.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03423___ypbF-BL02229.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03423___ypbF
# 2: BL02229
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 486
# Identity: 317/486 (65.2%)
# Similarity: 317/486 (65.2%)
# Gaps: 84/486 (17.3%)
# Score: 947.0
#
#
#=======================================
BSNT_03423___ 1 -ATGGAATC---CTTATGGAATCAGCTGGATCAGTTTACAGACGCGCCGA 46
..||||.| ||| ||| .|||||||.|..|||||.||||..||||
BL02229 1 GTGGGAAGCGAGCTT---GAA-GAGCTGGACCGTTTTACGGACGAACCGA 46
BSNT_03423___ 47 CCAAACAGATGCTCCAAGCGCTT---GTAAAACGAAAACAAAAATTCGAA 93
|.|||||.||||||| ||||.| .|||||.|||.| ||||.|.||||
BL02229 47 CGAAACAAATGCTCC--GCGCCTTAATTAAAAGGAAGA-AAAAGTACGAA 93
BSNT_03423___ 94 AATTATG-----CAGCACAATGCCGCAGAT----GGCGATG--GGCTTCA 132
||.|||| ||| |||.| |||.| ||||.|| |||
BL02229 94 AACTATGCCAGACAG-ACATT----CAGGTGGCAGGCGGTGGCGGC---- 134
BSNT_03423___ 133 CTTATCTGC-CTAGG---CTTATTATGTGTTATG----ATCA-------- 166
.||.||| | || |.|.||.|||||| || .|||
BL02229 135 --GATATGCGC--GGTTTCGTTTTGTGTGTT-TGCAGCGTCAAAGGGGAT 179
BSNT_03423___ 167 TGAGCAAAAGCCCGG-AGCCT---CAGCTTATACTTCAAGAAATACTCAG 212
||.|||||| ||| ..||| |.||| |.|| |||..|||
BL02229 180 TGGGCAAAA---CGGCTTCCTTTCCGGCT--TGCT----GAATGACT--- 217
BSNT_03423___ 213 CCATACCTTTTATTTATTTTGGATGCTGGCAACCGCTTTTGCCTACTGCA 262
||.|.|||.|..|.|||||..||.|..||||||||||.|||.|||
BL02229 218 -----CCGTCTATCTGCTGTGGATCTTGTCGGCCGCTTTTGCATACAGCA 262
BSNT_03423___ 263 CTTCATATTATTTCAAGAAAAAGGAAGAAAAATCCGA----GACCGATTT 308
|..|.||.|||||.||.||.||||||||||||.|.|| || ||.|
BL02229 263 CCGCTTACTATTTTAAAAAGAAGGAAGAAAAAGCAGAAGGGGA---ATAT 309
BSNT_03423___ 309 CCATAAACTGAGATGTGAAATTATTCAGAAAAGCACTGATCTCTGGCCGC 358
|||||.||||||||.||.|||||||||||||||||.|||||.|||||.|
BL02229 310 -CATAAGCTGAGATGCGAGATTATTCAGAAAAGCACGGATCTATGGCCCC 358
BSNT_03423___ 359 AGCCCGATAAATGGAAGGCGAGAGAGTCTGTTTTTCATATGATGAAGCAC 408
||||.||..|.|||||..|.||.||..|.||||||.|.||.|||||.||.
BL02229 359 AGCCTGAAGAGTGGAAATCAAGGGAAACGGTTTTTAAGATCATGAAACAG 408
BSNT_03423___ 409 AAATATGACATTAATCTATATTTTGAAAGTAAATAA 444
.|.||||||||||||||.|||||.|||||.||||||
BL02229 409 CAGTATGACATTAATCTTTATTTCGAAAGCAAATAA 444
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