Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03420 and BL02227

See Amino acid alignment / Visit BSNT_03420 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:22
# Commandline: needle
#    -asequence dna-align/BSNT_03420___ypbH.1.5803.seq
#    -bsequence dna-align/BL02227___mecB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03420___ypbH-BL02227___mecB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03420___ypbH-BL02227___mecB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03420___ypbH
# 2: BL02227___mecB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 592
# Identity:     456/592 (77.0%)
# Similarity:   456/592 (77.0%)
# Gaps:          14/592 ( 2.4%)
# Score: 1699.5
# 
#
#=======================================

BSNT_03420___      1 ATGCGGCTTGAGCGTCTGAATTATAATAAGATCAAAATCTTTTTAACCCT     50
                     |||||||||||||||||.||||||||||||||||||||||||.|.||.||
BL02227___mec      1 ATGCGGCTTGAGCGTCTAAATTATAATAAGATCAAAATCTTTCTGACACT     50

BSNT_03420___     51 CGATGATTTGACAGACCGGGGATTGACAAAAGAAGACCTCTGGAAGGACT    100
                     .||.|||.|||||||||||||..||||.|||||||||||.|||||.||||
BL02227___mec     51 TGACGATCTGACAGACCGGGGGCTGACGAAAGAAGACCTTTGGAAAGACT    100

BSNT_03420___    101 CATTTAAAGTCCACCAGTTATTTAAAGATATGATGAATGAAGCAAATACA    150
                     ||||||||||.||.|||.|.|||||.||.||||||||.|||||.||||||
BL02227___mec    101 CATTTAAAGTTCAGCAGCTGTTTAAGGACATGATGAACGAAGCGAATACA    150

BSNT_03420___    151 GAGCTCGGCTTTGAAGCGAATGGACCGATTGCAGTGGAAGTGTATTCTCT    200
                     ||||||||.||.|||||||||||.||.||.||.||.||||||||||||||
BL02227___mec    151 GAGCTCGGGTTCGAAGCGAATGGCCCAATCGCTGTTGAAGTGTATTCTCT    200

BSNT_03420___    201 CCAAGCACAAGGGATGGTCGTGATTGTAACAAAGAACCAAGACGCCGATT    250
                     .|||||||||||.||||||.|.|||||.|||||.||.||.||..|.||| 
BL02227___mec    201 TCAAGCACAAGGAATGGTCATCATTGTCACAAAAAATCAGGAAACAGAT-    249

BSNT_03420___    251 CAGAAGACG---ATGAGTATGATGATGATTACATCGAAATGCAAGTCAAG    297
                       |||||||   |||||||||||||.||.||.||.||||||||||||||.
BL02227___mec    250 --GAAGACGATAATGAGTATGATGAGGACTATATTGAAATGCAAGTCAAA    297

BSNT_03420___    298 CTTGATGAAAGCGCGGACATCATATATCAATTCCATTCCTTTGAAGATAT    347
                     ||||..|||||.|..|||||.||||||.||||.||..|.|||||..||.|
BL02227___mec    298 CTTGGCGAAAGTGTTGACATTATATATGAATTTCAAACGTTTGAGCATCT    347

BSNT_03420___    348 CATTCAGCTTT-CAGAAAGCT-TACAGCGAATCGGTA-TCACAGGGGGAA    394
                     .|||.|.|||| ||.|||.|| .||  ||.||||||| ||| |||.||.|
BL02227___mec    348 GATTGAACTTTCCAAAAATCTGGAC--CGCATCGGTATTCA-AGGCGGGA    394

BSNT_03420___    395 CTGTCTACCACTATGACGGGCA-GTACTTTTTAAGCCTTGAAGATCTAGG    443
                     |.|||||||||||||| ||||| |||.||.|||||.||.||.|||.|.|.
BL02227___mec    395 CAGTCTACCACTATGA-GGGCAGGTATTTCTTAAGTCTCGACGATTTTGA    443

BSNT_03420___    444 GTCACATACGGCTGAAGGGGTTGTGGCGGTTCTGGCTGAATACGGCAATC    493
                     .||.|.|..||.|||.||.||..|..||.||.|.||.|||||.||.||||
BL02227___mec    444 CTCCCTTGAGGTTGACGGCGTGATTTCGATTTTAGCCGAATATGGGAATC    493

BSNT_03420___    494 CGACAACTTTAACGATTTATCGCCTGCAAGAGTATGGTAAGCTCATTATG    543
                     ||||.||||||||||||||..|.||.||.||.||.||.|||...||.|||
BL02227___mec    494 CGACGACTTTAACGATTTACAGGCTTCAGGAATACGGAAAGAAAATCATG    543

BSNT_03420___    544 GACGGTAATGCCGTAGAAACGATACAAACTCATTTTTCATAA    585
                     ||....||||||||..|.||.||.||.||..|.|||..|||.
BL02227___mec    544 GAGAACAATGCCGTTCAGACCATTCAGACATACTTTAAATAG    585


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.