Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03403 and BL02217
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:21
# Commandline: needle
# -asequence dna-align/BSNT_03403___ypgA.1.5803.seq
# -bsequence dna-align/BL02217___fni.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03403___ypgA-BL02217___fni.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03403___ypgA-BL02217___fni.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03403___ypgA
# 2: BL02217___fni
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1104
# Identity: 749/1104 (67.8%)
# Similarity: 749/1104 (67.8%)
# Gaps: 108/1104 ( 9.8%)
# Score: 2361.0
#
#
#=======================================
BSNT_03403___ 1 GTGACTCGAGCAGAACGAAAAAGACAACACATCAATCATGCCTTGTCCAC 50
|||||.||||||.||.||||||.|.|||||||..||||||||.|||||||
BL02217___fni 1 GTGACGCGAGCAAAAAGAAAAAAAGAACACATTGATCATGCCCTGTCCAC 50
BSNT_03403___ 51 CGGCCAGAAGCGGGAAACAGGTCTTGATGATATTACGTTTGTTCACGTCA 100
|||.|||||.||..|.||.||.|||||||||||.||.|||||||||||||
BL02217___fni 51 CGGACAGAAACGTCAGACCGGGCTTGATGATATCACATTTGTTCACGTCA 100
BSNT_03403___ 101 GTCTGCCCGATCTTGCATTAGAACAAGTAGATATTTCCACGAAAATCGGC 150
|.||.||.||....|.|||...||||||.||||.|||.||.|||||.|||
BL02217___fni 101 GCCTTCCGGAAACGGAATTGTCACAAGTTGATACTTCAACCAAAATAGGC 150
BSNT_03403___ 151 GAAC---TTTCAAGCAGTTCGCCGATTTTTATCAATGCAATGACTGGCGG 197
|||| |||.| ||||||||.||||||||||||||.|||||.|||||
BL02217___fni 151 GAACTGTTTTTA---AGTTCGCCTATTTTTATCAATGCGATGACAGGCGG 197
BSNT_03403___ 198 CGGCGGAAAACTTACATATGAGATTAATAAATCGCTT--GCGCGAGCGGC 245
.|||||.||....||.|.||||||.| |.|..|||| |||.|.|||||
BL02217___fni 198 AGGCGGGAAGGCGACGTTTGAGATCA--ACAGGGCTTTGGCGAGGGCGGC 245
BSNT_03403___ 246 T----TATCAGGCTGGAATTCCCCTTGCTGTGGGATCGCAAATGTCAGCA 291
| .|.||||| ||.||..|.|||||.||.|||||||||||.||.
BL02217___fni 246 TGCACAAACAGGC----ATACCGGTCGCTGTCGGCTCGCAAATGTCCGCT 291
BSNT_03403___ 292 TTAAAAGATCC--ATCAGAGCGTCTATCCTATGAAATTGTTCGAAAGGAA 339
||.|||||||| || |||||.|..||.||.||.||.||..||||.|||
BL02217___fni 292 TTGAAAGATCCCGAT--GAGCGACCTTCATACGAGATCGTCAGAAAAGAA 339
BSNT_03403___ 340 AACCCAAACGGGCTGATTTTTGCCAACCTGGGAAGCGAGGCAACGGCTGC 389
||....||.|||||..|.||.|||||..||||.|||||.||.||.|..|.
BL02217___fni 340 AATATGAAGGGGCTTGTATTCGCCAATTTGGGGAGCGAAGCGACAGTGGA 389
BSNT_03403___ 390 TCAGGCAAAGGAAGCTGTTGAGATGATTGGAGC--AAACGCACTGCAGAT 437
.|||||.|||...||.||.||.|||||||.||| |.|.| ||.||.||
BL02217___fni 390 ACAGGCCAAGCGGGCGGTCGACATGATTGAAGCCGATATG--CTTCAAAT 437
BSNT_03403___ 438 CCACCTCAATGTGATTCAGGAAATTGTGATGCCTGAAGGAGACAGAAGCT 487
.|||||||||||||||||||||||.||.|||||||||||.|||.|.|..|
BL02217___fni 438 TCACCTCAATGTGATTCAGGAAATCGTCATGCCTGAAGGCGACCGCAATT 487
BSNT_03403___ 488 TTAGCGG-CGCACTGGAACGTATTGAACAAATTTGCAGTCATGTCAGTGT 536
|||..|| ||| |||...||.||||||.|.||.|||.|...||||||.||
BL02217___fni 488 TTACAGGACGC-CTGCGCCGGATTGAAGACATCTGCCGGAGTGTCAGCGT 536
BSNT_03403___ 537 ACCAGTCATTGTGAAAGAAGTCGGATTCGGTATGAGCAAAGAATCAGCAG 586
|||||||...||.|||||.||.||.||.||.|||||||..||..|.||.|
BL02217___fni 537 ACCAGTCGCCGTAAAAGAGGTTGGCTTTGGGATGAGCAGGGATACCGCGG 586
BSNT_03403___ 587 GAAAGCTGTATGAAGCTGGTGCTGCA-GCTGTTGACATTGGCGGTTACGG 635
....|||.|.|.|.|..||.| |.|| ||..|.||..|.|||||||.|||
BL02217___fni 587 CCCGGCTTTTTAACGTCGGCG-TTCAGGCGATCGATGTCGGCGGTTTCGG 635
BSNT_03403___ 636 AGGGACAAATTTCTCGAAAATCGAAAATCTCCGAAG----ACAGCGGAAA 681
.||.||.|||||.|||||||||||||||.|.||.|| |.|||.|
BL02217___fni 636 GGGAACGAATTTTTCGAAAATCGAAAATTTGCGCAGGGATAAAGCAG--- 682
BSNT_03403___ 682 ATCTCCTT---TTTTAACTCG-----TGGGGCATTTCGACAGCTGCCAGT 723
|| |||| ||| ||||||||.||||||||.|||||.
BL02217___fni 683 ------TTGAGTTTT---TCGATCAATGGGGCATATCGACAGCAGCCAGC 723
BSNT_03403___ 724 TTGGCGGAAATCCGCTCTGAGTTTCCTGCAA---GCACCATGATCGCCTC 770
.||||.|||.||.|.|| || |.|||.||.| || |.||.|||||.||
BL02217___fni 724 CTGGCCGAAGTCAGTTC-GA-TATCCGGCGATCGGC-CGATTATCGCATC 770
BSNT_03403___ 771 TGGCGGTCTGCAAGATGCACTTGACGTGGCAAAGGCAATTGCGCTTGGGG 820
.|||||..|.||||||||.|||||..||||.||..|.||.|||||.||.|
BL02217___fni 771 CGGCGGCATACAAGATGCCCTTGATTTGGCCAAATCGATAGCGCTGGGCG 820
BSNT_03403___ 821 CCTCTTGC-ACCGGAATGGCAGGGCATTTTTTAAAAGCGCTGACTGACAG 869
|.|| ||| .|.||.||||||||..|||||.|.||.|.| |||||||
BL02217___fni 821 CGTC-TGCGGCTGGGATGGCAGGCTATTTTCTCAAGGTG----CTGACAG 865
BSNT_03403___ 870 --TGGTGAGGA-AGGACTGCTTGAG-----GAGATTCAG---CTGATCCT 908
|.|.|||.| || ||.|.|| ||.||..|| |||| |
BL02217___fni 866 CTTCGGGAGAAGAG----GCGTTAGCCGCCGAAATCGAGAGCCTGA---T 908
BSNT_03403___ 909 TGAGGAATT--AAAGATGATTATGACCGTGCTGGGCGCCAGAACGATTGA 956
.||.||.|| ||||| |||||||||||..||||...|||.||||||||
BL02217___fni 909 AGAAGATTTCAAAAGA--ATTATGACCGTCTTGGGTTGCAGGACGATTGA 956
BSNT_03403___ 957 CGATTTACAAAAGGCGCCCCTTGTGATCAAAGGTGAAACCCATCATTGGC 1006
..|.||..||||.|||||.||.||.|||||.||.||.||..|||||||||
BL02217___fni 957 ACAGTTGAAAAAAGCGCCGCTCGTCATCAAGGGCGATACATATCATTGGC 1006
BSNT_03403___ 1007 TCACAGAGAGAGGGATCAA----------TACATCAAGCTATAGTGTGCG 1046
|.|.||.|||.||..|..| ||||.|| ||||
BL02217___fni 1007 TGAAAGCGAGGGGTGTTGACCCCTTTGTTTACAGCA----------TGCG 1046
BSNT_03403___ 1047 ATAA 1050
.|||
BL02217___fni 1047 TTAA 1050
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