Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00791 and BL02214
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:25
# Commandline: needle
# -asequence dna-align/BSNT_00791___ydcA.1.5803.seq
# -bsequence dna-align/BL02214___ydcA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00791___ydcA-BL02214___ydcA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00791___ydcA-BL02214___ydcA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00791___ydcA
# 2: BL02214___ydcA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 638
# Identity: 428/638 (67.1%)
# Similarity: 428/638 (67.1%)
# Gaps: 76/638 (11.9%)
# Score: 1319.0
#
#
#=======================================
BSNT_00791___ 1 ATGTTTATACGGACTGAAAATTTTCAAACATTTATCAGGCTTTACCCCGT 50
||||||||..|.||.|||||||||||.||.|||||||||||.|||||
BL02214___ydc 1 ATGTTTATCAGAACAGAAAATTTTCAGACGTTTATCAGGCTCTACCC--- 47
BSNT_00791___ 51 TGTCA---CCTTTATATTGGCTTTGCAAGCTGTTC--TCTGGCTGTTTTT 95
.|||| ||...||||||||..||| |||| |.| |.|||.|..||||
BL02214___ydc 48 GGTCACATCCGCCATATTGGCCCTGC-AGCT-TGCCATTTGGATTCTTTT 95
BSNT_00791___ 96 TTCACTTCC-----TGCCCATTCAGTCGTG-------TTATGGAGGGATA 133
||.|.|||| .|.||.|.|||..||| ||||
BL02214___ydc 96 TTTATTTCCGTTTACGGCCGTACAGATGTGGTCTGATTTAT--------- 136
BSNT_00791___ 134 CCGTCACAGGCTATAATCTAGGTG--TCGCAAACGGTGAATGGTGGCGGC 181
|.|..||||.||| || ||.| |.||.|||||.|||||||||.||.
BL02214___ydc 137 ---TGATTGGCTTTAA-CT-GGGGAATAGCGAACGGAGAATGGTGGAGGT 181
BSNT_00791___ 182 TGATCACACCGATTTTGCTGCACGCCGGTTTCACACATCTGCTGTTTAAT 231
|..|.||.||.||.||..|.||||||||||||...||.|||||.||||||
BL02214___ydc 182 TTGTGACGCCAATCTTTATTCACGCCGGTTTCGGCCACCTGCTCTTTAAT 231
BSNT_00791___ 232 TCCATGTCCATCTTTTTATTTGCCCCAGCTTTGGAACGCATGCT-GGGAA 280
||.|||||.||||||||.||||||||.|...|||||||.||||| |||||
BL02214___ydc 232 TCGATGTCGATCTTTTTGTTTGCCCCCGGGCTGGAACGAATGCTCGGGAA 281
BSNT_00791___ 281 AAGCGCA---TTTTCTTCTTGTATACGCCGGCTCCGGCATCATCGGCAAT 327
| |.|| ||.||.||.|.|||| .|||..|.||..|.||.||||||
BL02214___ydc 282 A--CTCAAGTTTCTCATCGTTTATA--TCGGAGCAGGAGTGATTGGCAAT 327
BSNT_00791___ 328 ATTGGCACTTATGTTACAGAGCCGCTTGATTACGTGCATGTCGGTGCTTC 377
||.|||||.|||.|.|..||.|||||.||.||..||||||||||.|||||
BL02214___ydc 328 ATCGGCACATATTTCATCGAACCGCTGGAGTATATGCATGTCGGCGCTTC 377
BSNT_00791___ 378 AGGCGCAATTTTCGGGCTATTCGGCGTGTACCTGTTTATGGTTCTTTTTC 427
.||.||.||||||||..|.||||||||||||||||..||.||.||.|||.
BL02214___ydc 378 GGGAGCCATTTTCGGCTTGTTCGGCGTGTACCTGTACATCGTGCTGTTTA 427
BSNT_00791___ 428 GCAATGAGCTAATAGGGCAGGAGC----ATTCCAAAATGATCATCACACT 473
|.||.|||||.||.| ||||| |||||.||||.|||.||||..|
BL02214___ydc 428 GAAAAGAGCTGATGG----GGAGCGCCAATTCCCAAATCATCGTCACCAT 473
BSNT_00791___ 474 GCTCG-CATTTGCCGTTCTCATGTCATTTATCAACTCCAATATTAACATG 522
.|||| ||||| |.|||.|.|||.|.|||.|.|||...|||||.||.|||
BL02214___ydc 474 CCTCGCCATTT-CGGTTTTGATGACGTTTGTAAACCAAAATATCAATATG 522
BSNT_00791___ 523 ATGGCTCATCTGTTTGGACTATGC--GGCGGGTTTCTTCT----TTCGTT 566
|||||.||..|.||.|| |.||| ||| ||..||..|| |.||..
BL02214___ydc 523 ATGGCGCACATCTTCGG--TCTGCTGGGC-GGACTCGCCTTGGCTCCGCC 569
BSNT_00791___ 567 TTTGTGTGTGCAAAAAAAAGAG----CGGCGGTATTAA 600
.|||| .|||.||||||| |||| |.||||
BL02214___ydc 570 ATTGT-----TAAACAAAAGAGTGAACGGC--TTTTAA 600
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