Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00975 and BL02211
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:31
# Commandline: needle
# -asequence dna-align/BSNT_00975___ydgH.1.5803.seq
# -bsequence dna-align/BL02211___ydgH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00975___ydgH-BL02211___ydgH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00975___ydgH-BL02211___ydgH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00975___ydgH
# 2: BL02211___ydgH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3481
# Identity: 1761/3481 (50.6%)
# Similarity: 1761/3481 (50.6%)
# Gaps: 1184/3481 (34.0%)
# Score: 3855.5
#
#
#=======================================
BSNT_00975___ 1 ATGAGAGCAATCATCAAATTCAAG-TGGGCAATTGCAGC-CATAGTATTA 48
||||||.|.||.|| |||..|.|| |||...|||||.|| |...|.|||
BL02211___ydg 1 ATGAGAACGATTAT-AAAGGCGAGATGGATCATTGCGGCGCTCTGGATT- 48
BSNT_00975___ 49 GCACTTACCGTCGTTTTGAGTTTGTTTTC-TCCGAACTTAACGGAGC--- 94
|||.|..|||.|||.| |.||| || ||||.||
BL02211___ydg 49 GCAATGGCCGCCGTCT--------TATTCATC--------ACGGCGCCCG 82
BSNT_00975___ 95 ----TGGCCAATCA--AAAGGGGCAGGCCCAGCTTCCCGCTGAT-GCTGT 137
.||.||||.| |||||.|.|||.||| ||| ||.||
BL02211___ydg 83 ATATGGGGCAATTAACAAAGGAGAAGGGCCA----------GATAGCGGT 122
BSNT_00975___ 138 TTCAGAAAGGGC-AAACGCCATTTTA---AAACAAGC------------- 170
|.|.||| ||| |..||.|.|.||| .|||||||
BL02211___ydg 123 TCCTGAA--GGCTATCCGTCTTCTTATGCGAACAAGCTTCTCGAACAAAT 170
BSNT_00975___ 171 GGGAGAAGAC---------AATAATTCGATCAGTGTTGTCTT--TACATT 209
|..|.||||| ||.||.||| ||||||.| ||..|.
BL02211___ydg 171 GTCAAAAGACGGGGATACGAACAAATCG------GTTGTCGTCGTATTTC 214
BSNT_00975___ 210 AGACAACGCTATAAAGAAAGAAACAGAGAATCAGCTCC----------GG 249
|| ||.||.||.|||| ||
BL02211___ydg 215 AG-----------------------GACAAACACCTCCTGCCGAATCGGG 241
BSNT_00975___ 250 ATAATGATTGATAAAATCAAAAAGATCGACGGTGTAGAAGAGGTAACATC 299
|....|.|| ||||| |||..||||..|..|.||||..||| ||
BL02211___ydg 242 AGGCGGCTT--TAAAA--AAAGCGATCACCACTTTAGAGAAGG----AT- 282
BSNT_00975___ 300 TCCTC--------TGTCA---------------------GCGGAAAAAGA 320
||||| |.||| |||||..|.||
BL02211___ydg 283 TCCTCCCTTCACGTCTCAGATATTACATCGTACTTTAACGCGGATGAGGA 332
BSNT_00975___ 321 -AGTCAAAGACCAGTTGATGTCGAAAGA-CAAGAA-AACCGTTCTCATGC 367
|.||||| |.|||.||.||||.||.|| | ||| .||..|.|||.|||
BL02211___ydg 333 TATTCAAA-AGCAGCTGTTGTCAAAGGATC--GAACGACGCTGCTCGTGC 379
BSNT_00975___ 368 CTGTCACGATTACAGGTTCTGATAAAAAGGCGGAAAAAATC---GCGGAC 414
||||||| ||| |||| ||..|.|||||| ||||.|
BL02211___ydg 380 CTGTCAC-ATT--------TGAT------GCAAACAAAATCAGTGCGGCC 414
BSNT_00975___ 415 GAGATTT--ATCAAATCGTTCCTGATGATTTGACGGCTTATA---TTA-- 457
|| |||| |.|||| |.|| .|||| |..|||||.| |||
BL02211___ydg 415 GA-ATTTAAAGCAAA--GGTC--AATGA----AAAGCTTAAAACTTTAAA 455
BSNT_00975___ 458 ------------------CGGG-AGCTTCCCTTATCAACCAGGATTTCGC 488
|||| ||| |.||.|||.|..|.|||.|| .
BL02211___ydg 456 ACTTGACTACGAGATGACCGGGCAGC--CGCTCATCGATGATGATGTC-A 502
BSNT_00975___ 489 TCAC-AGCTCAGAGGAAGGGCTT-AAGAAAACGGAAGTGATCACAGTCTG 536
|.|| |||||..||||| ||||| |||||.||.|||...|||||.|||.|
BL02211___ydg 503 TGACAAGCTCGCAGGAA-GGCTTGAAGAAGACCGAATATATCACGGTCGG 551
BSNT_00975___ 537 CCTGA---TCATCGGTTTACTGTTGATCGTGTTCCGATCTGTTGTGACGC 583
..|.| |.|||| |.|||.|..||||.|||||.||||..||..|||
BL02211___ydg 552 TTTTATTTTAATCG---TGCTGATTCTCGTATTCCGTTCTGCGGTTGCGC 598
BSNT_00975___ 584 CTTTTATCCCGATTGTGGTTGTCGGTTTTTCTTATCTGATCAGTCAATCC 633
|||||.|.|||.||.|||..||||...||||.||.||..|.||.||.|||
BL02211___ydg 599 CTTTTGTTCCGCTTTTGGCGGTCGCGCTTTCATACCTTGTGAGCCAGTCC 648
BSNT_00975___ 634 ATACTGGGC-ATCCTTGT---ATACAATGTTGATTTTCCTATCTCGACGT 679
.|..|.|.| || ||.|| |||| |.|||||||||..|.||.||||
BL02211___ydg 649 GTCGTCGCCTAT-CTAGTCAAATAC---GCTGATTTTCCGCTGTCCACGT 694
BSNT_00975___ 680 TTACGCAAACCTTCTTAGTTGCGATCCTGTTCGGCATTGGAACAGATTAC 729
|||||||||.|||..|.||.||||||.|||||||.||.||.||.||||||
BL02211___ydg 695 TTACGCAAATCTTTATGGTGGCGATCATGTTCGGAATCGGCACGGATTAC 744
BSNT_00975___ 730 TGCATACTGCTTCTTACACGGTTCCGT----GAAGAATTGGCAAACGGGC 775
|||||.||.||| |||..|.||| | |||||..|.||...||||.
BL02211___ydg 745 TGCATTCTTCTT-TTAAGCCGTT---TTAAGGAAGAGATCGCCCGCGGGA 790
BSNT_00975___ 776 ATGATAAAAAAGAAGCGGCGC-TTATCGCTTAC--CGTACA------GGG 816
|.||.||.|..||||| | || ||.|| ||||.| .||
BL02211___ydg 791 AAGACAAGATCGAAGC----CATT----CTGACAACGTATAAAACGGCGG 832
BSNT_00975___ 817 GGAAAAACCTTATTTATCAGCGGATTTGCGGTATTGATCGGATTTTCCGC 866
|||.||.|.||.|.| ||||||||.|.||.||.||||||||.|||.|...
BL02211___ydg 833 GGAGAACCGTTCTGT-TCAGCGGAATCGCCGTTTTGATCGGTTTTACTTG 881
BSNT_00975___ 867 CTTAGGATTTG-CGAAGTTTGC-GATTTTCCAATCCGCAGTAGGGGTAGC 914
|.|.||.|||| |||| ||.| |.|||.|.|.||.||.||.|..|||||
BL02211___ydg 882 CATCGGCTTTGCCGAA--TTCCAGCTTTACAAGTCTGCGGTCGCAGTAGC 929
BSNT_00975___ 915 AGTCGGTGTGGGAATCTTAAT---------------GATCATCCTCTACA 949
.||.|||||.|...||||.|| ||||
BL02211___ydg 930 GGTGGGTGTCGCGGTCTTGATTTTGGCGCTTCTGTCGATC---------- 969
BSNT_00975___ 950 CACTGCTGCCATTATTTATGGTGACGCTG----GGTGAAAAAT--TATTC 993
.||||.||.||.||| |||| || |.|||.| |.||.
BL02211___ydg 970 -----GTGCCGTTTTTCATG-----GCTGTTTTGG-GGAAAGTGCTGTTT 1008
BSNT_00975___ 994 TGGCCT-TC-TAAGAAAGTGCTGTCA--CACAGTGATAACAAA-CTATGG 1038
|||||| || .|.||||...|.|.|| |.|||| |||| ||||||
BL02211___ydg 1009 TGGCCTGTCAGAGGAAATATCGGGCACCCGCAGT-----CAAAGCTATGG 1053
BSNT_00975___ 1039 G----CGTTTCTCGGCAGACACTCCGTTGCGCGT--------CCGTTTCT 1076
| || .||| |||||.|||.| ||| ||
BL02211___ydg 1054 GAAACCG----CCGG--------CCGTTTCGCTTTCAGTAAGCCG---CT 1088
BSNT_00975___ 1077 GTTCA-----TTG-TCATAACGGTGGTGATTACGC--TTCCGTTCATCTT 1118
|.||| ||| ||.||.|||..||| || |.|||...|||||
BL02211___ydg 1089 GATCAGCCTGTTGATCGTAGCGGCCGTG-----GCCGTGCCGCCGATCTT 1133
BSNT_00975___ 1119 GACCTATGATG--ACCAGATTTCATTCGACT-CAAC-----TGCGGAAAT 1160
||..|||.|.| || |.|||| || |||| ||..|||||
BL02211___ydg 1134 GATGTATAAAGGAAC--GCTTTC------CTACAACAGCCTTGACGAAAT 1175
BSNT_00975___ 1161 C----AGCAACGATTATAAATC----------TATAAAAGCTCTCGAGGC 1196
| |.||| ||..|||| |.|||.| |
BL02211___ydg 1176 CGGAGATCAA----TACGAATCCGTCAGCGCATTTAACA----------C 1211
BSNT_00975___ 1197 CATT------AAGGATGGATTCGGGGAAGGAAAAGCGTTCCCGATCAATG 1240
|||| ||| ||||||...|||.||.|.||.|||.|||..|
BL02211___ydg 1212 CATTTCCGACAAG------TTCGGGCCGGGAGAATCTTTGCCGGTCACGG 1255
BSNT_00975___ 1241 TTGTCGTAAAAGGAGACA----AAGATCT---TACAACA-------GCTG 1276
|.||..|.||| ||| |.|..|| ||| || ||||
BL02211___ydg 1256 TCGTGCTCAAA----ACATCGGATGCGCTCGATAC--CAATGACGGGCTG 1299
BSNT_00975___ 1277 AT----------ACAAT--------CCCTTATCTAGGAA-----ATA--- 1300
|| |.||| ||.|| ||| |.|
BL02211___ydg 1300 ATCGCGATTGAAAAAATCAGCCGCGCCATT------GAACAGACAAACGG 1343
BSNT_00975___ 1301 --TCAGCAAAG------------------CGATCGAGAAA---GTTGATC 1327
||||||||| ||.||| |||| |.|||.|
BL02211___ydg 1344 CGTCAGCAAAGTTCGCAGTGCGACCCGGCCGGTCG-GAAAAGGGCTGAGC 1392
BSNT_00975___ 1328 ATGTTGACTCTGTTATGAC--CATTACGCAGCCGA-----CTG------- 1363
||| |||| || ||..||.|||.||| |||
BL02211___ydg 1393 -----GAC-CTGT----ACGTCAAAACACAGGCGAACGAGCTGAATAAAG 1432
BSNT_00975___ 1364 ---GTGAAA--------AAA--TC----AAAGATTTATATA-----TTG- 1390
.||||| ||| || ||||| |||.|.| |||
BL02211___ydg 1433 GCCTTGAAAGCGGCAATAAAGGTCTGAAAAAGA-TTAAAGACGGGCTTGC 1481
BSNT_00975___ 1390 -------------------------------------------------- 1390
BL02211___ydg 1482 AGAAGCGAGCAAGTCAATCGCGGATCAAAAGCCGCAAATCGAAGCGTCCG 1531
BSNT_00975___ 1391 --------AT-AACCAGCT------AGG------ATCGGTTTCAGACGG- 1418
|| |||||||| ||| ||||.|...||.|||
BL02211___ydg 1532 GAAAAGGAATCAACCAGCTGATCAAAGGAACCGAATCGATCCAAGCCGGA 1581
BSNT_00975___ 1419 -----------------------------GCTGAA-TAAG--ACAG---- 1432
|||||| .||| ||||
BL02211___ydg 1582 ATCAGCGACGTTGAAGCCAACATGAGAAAGCTGAAGGAAGGAACAGACCA 1631
BSNT_00975___ 1433 -----TAAAAGGGATTGCC------------GATGTCCAAA--GCGGATT 1463
.|.||||..|.||| ||..|||||| |||
BL02211___ydg 1632 AAGCAAACAAGGCGTCGCCCAGGCGAAAAAAGAAATCCAAACTGCG---- 1677
BSNT_00975___ 1464 AACGGATATAGAAAACGGACTG----------------AATCAAATGGCA 1497
|.|||||.| ||| |||.||||
BL02211___ydg 1678 ---------AAAAAACAG-CTGACGGCGCAAGTCGATCAATTAAAT---- 1713
BSNT_00975___ 1498 GGGCAAACCGGCTCG--GCCT-CAA------ATGGAGGGTCT----GGCG 1534
||.|||| ||| .||| ||| ||.||...||| .|||
BL02211___ydg 1714 GGACAAA-----TCGAAACCTACAAAGAAATATCGAAAATCTTAAAAGCG 1758
BSNT_00975___ 1535 GTTCACTG------GGCG---ATG------------CGGC---------- 1553
| ||.|| |.|| ||| ||||
BL02211___ydg 1759 G--CATTGTCTCAAGCCGAAAATGCCCAAGGCATAACGGCTGACGTGCAA 1806
BSNT_00975___ 1554 -AGATGGCTTGGGCA---AAATCAA----TCAGCAGCTGCAGCTCGTGAG 1595
|||| |.|||.||| ||||||| |||..| |.||.|..||
BL02211___ydg 1807 AAGAT-GATTGAGCAGACAAATCAAAATTTCAAAA-----ATCTTGAAAG 1850
BSNT_00975___ 1596 C-AAACAGATTTCCC------------AAACC---------GGCAAT--A 1621
| ||| ||||| ||.|| |||.|| |
BL02211___ydg 1851 CGAAA-----TTCCCGAAGTGAAGGAGAATCCTTCTTATTTGGCGATCAA 1895
BSNT_00975___ 1622 CCG------CACAGACCGTGCAGCAGCTTACGGCAATC-AGC--GGA-CA 1661
..| ||||||.|.|||| .|||||||| ||| ||| ||
BL02211___ydg 1896 AGGCTCTTACACAGAGCTTGCA-------TCGGCAATCAAGCAGGGATCA 1938
BSNT_00975___ 1662 GCTTGGCCAGATTCAAACCGGCCTT------GAA--------CAA--GCG 1695
||| |||.|||||.| ||| ||| |||
BL02211___ydg 1939 -------CAG----AAAGCGGCCGTTTACACGAAGCAGGCGGCAAACGCG 1977
BSNT_00975___ 1696 AACCAACAGCTCTCAGGCCAGCAG-----------GCACAA--GCCGGAA 1732
||..|.|||||...|| |||||| |||.|| ||.||||
BL02211___ydg 1978 AAAAAGCAGCTTGAAG--CAGCAGATGCATTTATCGCAAAAGCGCAGGAA 2025
BSNT_00975___ 1733 CGCTGA-CAGAAAGCCTAAAAAAGC----TGTCCGAAGGCGTGAGGAGCG 1777
|| ||.||||..||.|.|||| | |||.|...|||..|.||
BL02211___ydg 2026 ----GAGCAAAAAGTGTACACAAGCAAAAT---CGATGCTCTGATAAACG 2068
BSNT_00975___ 1778 --------CAAATC-----AGGGCCTGA--------CGAA---------- 1796
|||||| |||||.||| ||||
BL02211___ydg 2069 GCCTCGGCCAAATCGAAAAAGGGCTTGAAGAGACATCGAAGGGGCAGGGA 2118
BSNT_00975___ 1797 ----------AGTCTCTGACGGTATTACAGCT----TC-----CAGTGAT 1827
|.||.|||.| || |||| || |||
BL02211___ydg 2119 CAGCTCGCCGATTCGCTGCC-----TA-AGCTCGAATCAGGCGCAG---- 2158
BSNT_00975___ 1828 ATGTTAGAGGACATGAGCAAAAGTCCAACTGTAAG-AGATACAGG-CATA 1875
|| ||||.| ||..|||.|||| ||| ||||..||| .|.|
BL02211___ydg 2159 --GT--GAGGTC----GCTGAAGGCCAA----AAGCAGATGAAGGAAAAA 2196
BSNT_00975___ 1876 TTC-----ATTC---------CT-GGTCAAGTAA---------TGAA--- 1898
.|| |||| || |.||||.||| ||||
BL02211___ydg 2197 GTCGGAGAATTCGCCGGCCAGCTCGATCAATTAACAAAAGGGCTGAATTC 2246
BSNT_00975___ 1899 ------GGAC--------AAAGACTTTAAGAAGTCAATTG---------- 1924
|||| |||.|.||.|||..|||...||
BL02211___ydg 2247 AAGCGTGGACGGCCTCGAAAAAATTTCAAGCGGTCTGATGGGAGCAGGCG 2296
BSNT_00975___ 1925 ---ACCAGTAT------------------------------TCC------ 1935
|||.|.|| |||
BL02211___ydg 2297 ACTACCTGGATCAGCTGAAAAACGCATCGGATCAAGAAATGTCCGGCTGG 2346
BSNT_00975___ 1936 TTTG------CAGACG-------------GCAA-------AGGTGTTCAA 1959
|||| .|||.| |||| |||||||.||
BL02211___ydg 2347 TTTGTCCCTAAAGAAGTGCTGAAAAACAAGCAATTTCAGCAGGTGTTTAA 2396
BSNT_00975___ 1960 T-----TAAGT-------------------GTCGTTC----------TGG 1975
| ||.|| |.||.|| |||
BL02211___ydg 2397 TTCCTATATGTCAGACGACCGCCATATCACGACGATCGATGTGATATTGG 2446
BSNT_00975___ 1976 ATTCAAATCCGTACTCAGAAC-AAGCTATTGC----------GACAATAA 2014
|....|||||||| |...||| .|||.||||| ||||.|.|
BL02211___ydg 2447 AAGACAATCCGTA-TGGAAACGGAGCGATTGCCAAGGTCAAAGACATTGA 2495
BSNT_00975___ 2015 ACCA-AATTAAAAAAGCGGTCGCAAACGAAGTTGACGGCACTCCTTTGGA 2063
|.|| .|.||||| |||.|.| ||..||.|||.|.||||.|
BL02211___ydg 2496 AGCATCAGTAAAA---CGGGCTC--------TTCCCGACACGCATTTGCA 2534
BSNT_00975___ 2064 GGATGCACAGATCGTAT----ACGGCGGGGTCACGAGTATGAATGCGGAC 2109
.||||| |||||.| .||||||.||..|.||.||.||.||.||.
BL02211___ydg 2535 CGATGC----ATCGTTTGGCGTCGGCGGCGTTTCCAGCATCAACGCCGAT 2580
BSNT_00975___ 2110 TTAAAAGAGCTATCCACAAC-GGACTTCTCCAG-AACAATGGTGAT---T 2154
||.||..||||.| ||.|.| |||||| ||| ||| |.|||||| |
BL02211___ydg 2581 TTGAAGCAGCTGT-CAGACCAGGACTT---CAGCAAC-ACGGTGATCTAT 2625
BSNT_00975___ 2155 ATGATTATAGG------CCTGTTTATCGTGTTAACCATTTTGTTCCGCTC 2198
|||||.||.|| ||||.|..|||| |.|..|||||||.||
BL02211___ydg 2626 ATGATGATCGGAATCTTCCTGATCCTCGT------CCTGCTGTTCCGTTC 2669
BSNT_00975___ 2199 AATGATCATGCCGATTTATATGATCGCGTCATTGCTGCTGACGTACTATA 2248
|||..||||||||.|.|||.||.|||..||..||.|..|||||||||.|.
BL02211___ydg 2670 AATCGTCATGCCGGTGTATTTGGTCGGATCGCTGGTCTTGACGTACTTTG 2719
BSNT_00975___ 2249 CGTCGATATCCA------TAACAGAATTAATTTTTGTAAACGGC----TT 2288
| ||||| ||||.|||||.||||| .||||| ||
BL02211___ydg 2720 C------ATCCATCGGTGTAACCGAATTTATTTT----CACGGCGTTTTT 2759
BSNT_00975___ 2289 AGGAAACGCCGGCGTCAGCTGGGCAGTGCCATTCTTCAGCTTTGTCATCT 2338
.||..|..|||||.|||.||||||.|||||.|||||..|||||||.||.|
BL02211___ydg 2760 CGGCTATCCCGGCCTCAACTGGGCGGTGCCTTTCTTTGGCTTTGTGATTT 2809
BSNT_00975___ 2339 TGATCGCGTTAGGGGTAGATTATTCGATCTTCTTGCTGGATCGATTTAAG 2388
|.||.|||.|.||.||.||.||||||||||||.||.||||.||.|||||.
BL02211___ydg 2810 TAATGGCGCTTGGTGTGGACTATTCGATCTTCCTGATGGAACGGTTTAAC 2859
BSNT_00975___ 2389 GAAGA--GGTGCACCTTGGCAT----TGA--GCAAGGTGTCGTCAGGTCA 2430
|||.| ||.|.|| |.|| ||| || |.||.||..| ||.
BL02211___ydg 2860 GAATACCGGGGAAC----GGATATTATGACGGC--GATGACGGAA--TCG 2901
BSNT_00975___ 2431 ATGAGCAAAATGGGATCTGTCATTATTACAGCTGCCATTATATTGGCCGG 2480
||||..||.||||||||.||.||||||.||||.||..|.||.|||||.||
BL02211___ydg 2902 ATGAAAAATATGGGATCGGTTATTATTTCAGCCGCTGTCATCTTGGCGGG 2951
BSNT_00975___ 2481 TACGTTCGCGGCGATGATGCCTTCAGGTGTCAATA-CACTGATGCAGGTG 2529
.||.||||||||||||.||||.||.||.|| ..|| |.||..||||..|.
BL02211___ydg 2952 AACCTTCGCGGCGATGCTGCCGTCCGGCGT-TTTATCGCTTCTGCAAATC 3000
BSNT_00975___ 2530 GCAAGTGTTATCATCATCGGG-CTCTTGCTTTACGGCCTT-GTTATACTT 2577
||.|...||.|..|.| |||| ||.|||||.|| .||.|| ||.||.||.
BL02211___ydg 3001 GCCACCCTTGTGCTGA-CGGGTCTTTTGCTGTA-TGCATTCGTCATGCTG 3048
BSNT_00975___ 2578 CCGCTCTTCATCCCGGCAATCATTGCGACCTTTGGAGAAGGAAACTGGTG 2627
|||||.|||.||||.|.|||..||..||.|||.||...||..|||||||.
BL02211___ydg 3049 CCGCTGTTCGTCCCTGTAATGGTTCGGATCTTCGGCTCAGCCAACTGGTT 3098
BSNT_00975___ 2628 GCCGTTCGGCAGGAAGAAAGGAAAAGAGTAA 2658
.||||| .|||.|||||||.|||
BL02211___ydg 3099 TCCGTT---------TAAAAGAAAAGAATAA 3120
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