Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00811 and BL02210

See Amino acid alignment / Visit BSNT_00811 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:27
# Commandline: needle
#    -asequence dna-align/BSNT_00811___ydcI.1.5803.seq
#    -bsequence dna-align/BL02210___ydcI.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00811___ydcI-BL02210___ydcI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00811___ydcI-BL02210___ydcI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00811___ydcI
# 2: BL02210___ydcI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2233
# Identity:    1605/2233 (71.9%)
# Similarity:  1605/2233 (71.9%)
# Gaps:         143/2233 ( 6.4%)
# Score: 5589.0
# 
#
#=======================================

BSNT_00811___      1 ATGGAAACGTCAGCCCTTTTAAAAC----AGCAAATTGCGAAAGAAATAG     46
                     |||||.||.|.|||    .|.||.|    |.|||||.||.|||||||..|
BL02210___ydc      1 ATGGATACTTTAGC----GTCAATCGTCAAACAAATCGCAAAAGAAACGG     46

BSNT_00811___     47 GTTTATCACAAAAACACGTTGAAAGTGTCATCCGCCTGCTAGAAGACGGC     96
                     |..|..|.|.|||.||.||.||.||||||||.|...|..||||.||||||
BL02210___ydc     47 GGCTTGCGCCAAAGCATGTCGAGAGTGTCATTCAATTATTAGAGGACGGC     96

BSNT_00811___     97 AATACAGTACCGTTTATTGCCCGGTATCGAAAAGAGCAGACGGGTTCAAT    146
                     ||.||.||.||.||||||||..|.||.||||||||.||.|||||.||.||
BL02210___ydc     97 AACACCGTCCCCTTTATTGCGAGATACCGAAAAGAACAAACGGGCTCCAT    146

BSNT_00811___    147 GGATGAGGTTCAGATTCAGACGATTTCTGAACGCTGGCAATACATACAAA    196
                     ||||||.||.||.||.||.||.||.||.|||||||||..||||||.||..
BL02210___ydc    147 GGATGAAGTCCAAATACAAACTATCTCCGAACGCTGGGGATACATTCAGC    196

BSNT_00811___    197 ACCTGAACCAGCGAAAAGAAGAAGTCATCAGGCTGATTG-----CAGAGC    241
                     |..|.||.|||||.|||||.|||||||||||||||||.|     |||.||
BL02210___ydc    197 ATTTAAATCAGCGGAAAGACGAAGTCATCAGGCTGATCGATGAACAGGGC    246

BSNT_00811___    242 AGGATAAACTGACAGATGATCTAAAAGGT-AAAATCGAGCAATCGGTGAA    290
                     |.|.|.|.|.|||||.||      |||.| .|.||.||..||.|||..||
BL02210___ydc    247 AAGCTGACCGGACAGCTG------AAGCTGGATATAGAAAAAGCGGACAA    290

BSNT_00811___    291 GCTTCAGGAAGTGGAAGACCTTTACCGCCCTTATAAACAAAAACGCAAAA    340
                     |||.||||||||.||||||.|.|||.|.||.|.||||||||||||.||||
BL02210___ydc    291 GCTCCAGGAAGTTGAAGACTTATACAGACCGTTTAAACAAAAACGAAAAA    340

BSNT_00811___    341 CAAAGGCGACAGTCGCCAAAAGCAAAGGCCTTGAGCCGCTTGCCGACTAT    390
                     |.||||||||..||||||||||||||||.|||||.||..|.||.||.|..
BL02210___ydc    341 CCAAGGCGACGATCGCCAAAAGCAAAGGGCTTGAACCTTTGGCTGATTTC    390

BSNT_00811___    391 ATCCTGACACTTCCCC------AAGATGATCGTCTGGCAGC--AA--CTG    430
                     |||.|..|.||.||.|      ||||||      |.|||||  ||  |.|
BL02210___ydc    391 ATCATCTCGCTCCCGCGTAATGAAGATG------TAGCAGCCGAAGCCCG    434

BSNT_00811___    431 CAGACCAATACATCAGCGAAGAAAAAGAAGTGTTCACACGA-----GAAG    475
                     ||    |.|||||.|..||||||||.|||||     ||.||     ||||
BL02210___ydc    435 CA----AGTACATAAATGAAGAAAAGGAAGT-----CATGAGCGCCGAAG    475

BSNT_00811___    476 AAGCGATTGAAGGCGCCAAGCACATTATTGCGGAACAAATCTCAGACGAG    525
                     |||||.|||||||.||.|||.||||..|.||.||||..|||||||||||.
BL02210___ydc    476 AAGCGCTTGAAGGAGCAAAGAACATACTGGCTGAACGGATCTCAGACGAA    525

BSNT_00811___    526 CCGACCTTCAGAAAGTGGATTCGCCAGGAAACCTTCAAAAGAGGAACCAT    575
                     |||...|.|||.||||||||..|.|||||.||.||.|||||||||||..|
BL02210___ydc    526 CCGGAATACAGGAAGTGGATCAGGCAGGAGACTTTTAAAAGAGGAACGCT    575

BSNT_00811___    576 TAAGTCCGCAGCCGGAAAG-TCGGCAGACACCGATGAGAAAAATGTGTAT    624
                     .||||||||.||  .|||| |  ||.||..|.||||||||.||..|.|||
BL02210___ydc    576 GAAGTCCGCGGC--AAAAGAT--GCCGAAGCGGATGAGAAGAAAATCTAT    621

BSNT_00811___    625 GAAATGTATTACGAGTATGAAGAGCCAATTGCAAAAGTTGTTCCGCATAG    674
                     |||||||||||.||.||.||||||||.|||..||||.|.|||||.|||.|
BL02210___ydc    622 GAAATGTATTATGAATACGAAGAGCCGATTCAAAAAATCGTTCCTCATCG    671

BSNT_00811___    675 GGTGCTGGCAATGAACCGCGGCGAAAAAGAAGATATTTT-AAAG-GTAGC    722
                     .||.||.|||.|.|||||||||||||||||.||.||||| |.|| ||  |
BL02210___ydc    672 CGTACTCGCAGTTAACCGCGGCGAAAAAGAGGAGATTTTGAGAGCGT--C    719

BSNT_00811___    723 GATCGAACCGCCTGCGGATCACATTAAGGCGTATTTAGAAAAACAAAT--    770
                     |.||||.|||||.||.||.|.|||..|.||.||.||.|||||||..||  
BL02210___ydc    720 GGTCGAGCCGCCGGCAGACCGCATCCAAGCTTACTTGGAAAAACGGATTT    769

BSNT_00811___    771 --CATCAAA-------AATCGCTCAACA--TCCGTAAGAGAGATTTTGCA    809
                       ||.||||       ||..||||||.|  |||..||.||.|        
BL02210___ydc    770 TACAACAAAAGCAAACAAGTGCTCAAGATGTCCTGAAAAGCG--------    811

BSNT_00811___    810 GGAGACAATTGAAGACAGCTATAAAAGGCTGATCCAGCCGGCAATCGAGC    859
                          |.||.||||||.|||||||..|.|||||.||||||.||||||||.
BL02210___ydc    812 -----CGATCGAAGACGGCTATAAGCGCCTGATTCAGCCGTCAATCGAGA    856

BSNT_00811___    860 GTGAAATCAGGAAAGAGCTCTCAGAAAAAGCTGATGAACAGGCGATTCAT    909
                     |.||||||||.|||||..|..|.|||||.||.||.||.||.||||||||.
BL02210___ydc    857 GGGAAATCAGAAAAGAATTGACGGAAAAGGCGGAAGACCAAGCGATTCAC    906

BSNT_00811___    910 ATTTTCTCAGAGAACTTGAGAAAGCTTCTTTTGCAGCCGCCGATGAAAGG    959
                     ||.||..|.||.||..||.|.|||||.||..|||||||||||||||||||
BL02210___ydc    907 ATATTTGCCGAAAATCTGCGCAAGCTGCTGCTGCAGCCGCCGATGAAAGG    956

BSNT_00811___    960 CAAAAC-CGTTCTCGGTGTTGACCCAGCCTTTCGAACCGGCTGTAAGCTC   1008
                      |||.| |||||||||.||.|||||.||.||.||.||.|||||.|||||.
BL02210___ydc    957 -AAAGCTCGTTCTCGGCGTCGACCCGGCATTCCGCACAGGCTGCAAGCTG   1005

BSNT_00811___   1009 GCTGT-GTCAGATGAGACTGGAAAAGTCTTGAAAATTGATGTGATCTATC   1057
                     ||.|| || .||||||||.|||||..|..|.||.||.||.||.||.||.|
BL02210___ydc   1006 GCAGTCGT-GGATGAGACGGGAAAGATGCTCAAGATCGACGTCATATACC   1054

BSNT_00811___   1058 CGCATGCGCCAGTCAACAAAACAAAAGAAGC--CCAT-GAAAAAGTGAAA   1104
                     ||||..|.||.||||  |.||.||||| .||  |||| |||||||| |||
BL02210___ydc   1055 CGCACCCTCCCGTCA--ATAAGAAAAG-CGCCGCCATCGAAAAAGT-AAA   1100

BSNT_00811___   1105 AAG-ATTCTTGAGCAGTATCAAGTCGAGATGGTGGCGATCGGAAACGGCA   1153
                     |.| ||..|.||..|.|.||||.|||||.|..|.||.|||||.|||||.|
BL02210___ydc   1101 ACGCATCATCGAAGACTTTCAAATCGAGGTCATCGCAATCGGGAACGGAA   1150

BSNT_00811___   1154 CAGCATCCAGAGAAACAGAACAATTCATCGTCAATGTACTGAAAGACATG   1203
                     |.|||||.|||||.||.|||||.||.||||.|.||.|..||||.||||| 
BL02210___ydc   1151 CGGCATCAAGAGAGACGGAACAGTTTATCGCCGATCTCTTGAAGGACAT-   1199

BSNT_00811___   1204 CCGCG-CAAAA---TTTATTATGTGATCGTCAATGAAGCGGGTGCAAGCG   1249
                        || ||.||   |.||.|||.|||||||||||||||||||.||.||||
BL02210___ydc   1200 ---CGACAGAAAGGTGTACTATCTGATCGTCAATGAAGCGGGAGCCAGCG   1246

BSNT_00811___   1250 TCTATTCGGCTTCAGAGCTGGCCCGAGAAGAATTCCCTGACCTTAAGGTT   1299
                     ||||||||||.||||||||.||..|.|||||||||||.||.||..|||||
BL02210___ydc   1247 TCTATTCGGCATCAGAGCTTGCGAGGGAAGAATTCCCCGATCTGCAGGTT   1296

BSNT_00811___   1300 GAAGAGCGCAGTGCCGTGTCTATTGCGCGAAGACTTCAAGACCCGCTTGC   1349
                     |||||.||.||.||||||||.||.||.||.|||||.|||||||||||.||
BL02210___ydc   1297 GAAGAACGGAGCGCCGTGTCGATCGCACGCAGACTCCAAGACCCGCTCGC   1346

BSNT_00811___   1350 GGAGCTCGTTAAAATCGATCCGAAGTCTGTTGGTGTCGGACAGTATCAGC   1399
                     .||.|||||.|||||||||||.|||||.||.||.|||||.|||||.||||
BL02210___ydc   1347 CGAACTCGTCAAAATCGATCCCAAGTCGGTCGGGGTCGGCCAGTACCAGC   1396

BSNT_00811___   1400 ATGACGTCAGCC---AAAAACGCTTAAATGAATCTCTGCGGTTTGTCGTC   1446
                     |.||.|||||||   ||||||   ||||.||.||.||.||.||||||||.
BL02210___ydc   1397 ACGATGTCAGCCAGAAAAAAC---TAAACGATTCGCTCCGCTTTGTCGTG   1443

BSNT_00811___   1447 GAAACGGTCGTAAACCAGGTGGGAGTAAACGTCAACACAGCCTCCGCCGC   1496
                     |||||.|||||.||||||||.||.||.|||||.||.||.||.||.|||||
BL02210___ydc   1444 GAAACCGTCGTCAACCAGGTCGGCGTCAACGTGAATACTGCATCAGCCGC   1493

BSNT_00811___   1497 GCTGCTT-CAGTATGTAGCGGGATTATCGAAGTCTGTAGCAGGCAACGTT   1545
                     ||| ||| ||.|||||.||.|||.|||||||..|.||.||.|.||||.|.
BL02210___ydc   1494 GCT-CTTGCAATATGTGGCCGGACTATCGAAAACAGTCGCGGCCAACATC   1542

BSNT_00811___   1546 GTCAAAAAACGTGAGGAAATCGGAAAGTTTTCAAATCGAAAAGAACTGAA   1595
                     |||||||||||.||.||.||||||||.||..|.|..||.|||||.|||||
BL02210___ydc   1543 GTCAAAAAACGGGATGAGATCGGAAAATTCACGAGCCGGAAAGAGCTGAA   1592

BSNT_00811___   1596 GGACATCCCAAGGTTAGGTGCGAAAACCTACGAGCAATGTATCGGTTTCT   1645
                     .|||||.||..|..|.||.||||||||.||.||||||||.|||||.||.|
BL02210___ydc   1593 AGACATTCCGCGCCTGGGCGCGAAAACGTATGAGCAATGCATCGGCTTTT   1642

BSNT_00811___   1646 TAAGAGTGCAGGAAGG-GACAGAGCCTTTGGATAGAACAGGCATCCACCC   1694
                     ||||.||||..||.|| || .||.||..|.||..|.||||||||||||||
BL02210___ydc   1643 TAAGGGTGCCTGACGGCGA-TGAACCGCTCGACCGGACAGGCATCCACCC   1691

BSNT_00811___   1695 GGAAAGCTATAAAGAAACAAAAGCACTTTTGAAAAAACTCGGACTTTCAA   1744
                     |||.|||||||||||.||.|.||..||..|||||||.||.||.|||||||
BL02210___ydc   1692 GGAGAGCTATAAAGAGACGAGAGAGCTCCTGAAAAAGCTGGGCCTTTCAA   1741

BSNT_00811___   1745 CAGAACATATCGGCACGGCGGAATTGA-----AGGACAAAATCAATCAGC   1789
                     |||..||.||||||||     ||..||     |||||||||||||..|.|
BL02210___ydc   1742 CAGCCCAAATCGGCAC-----AAAAGAGCTTCAGGACAAAATCAACGAAC   1786

BSNT_00811___   1790 TGGCGCTCTCTGAAACGGCAAAAGAGCTGGGAATCGGCGAAATCACTCTG   1839
                     ||....|.||.|||.|.||..||.|||||||.|||||.||||||||.|||
BL02210___ydc   1787 TGAATATTTCCGAAGCAGCTGAACAGCTGGGGATCGGGGAAATCACCCTG   1836

BSNT_00811___   1840 AAAGACATTTGTGAACAGCTGACAAGGCCGGAACGCGATCCGCGCGATGA   1889
                     |||||||||||.|..||||||||.|||||.||.|||||||||.|.|||||
BL02210___ydc   1837 AAAGACATTTGCGCCCAGCTGACGAGGCCTGAGCGCGATCCGAGGGATGA   1886

BSNT_00811___   1890 GGTGCCTAAGCCTTTGCTGAAAACAGACGTCCTTCAGCTGGAAGATTTGA   1939
                     .||.|||||.||..|..|.|||||.||.||.|||||..||||.||.||.|
BL02210___ydc   1887 AGTCCCTAAACCGCTCTTAAAAACCGATGTGCTTCAATTGGAGGACTTAA   1936

BSNT_00811___   1940 AAGAGGGAATGGAACTGCAGGGCACCGTGCGCAATGTAGTGGACTTCGGA   1989
                     |||||||.||||||||.|||||.||.|||||.||.||.||.||||||||.
BL02210___ydc   1937 AAGAGGGGATGGAACTTCAGGGGACAGTGCGGAACGTCGTTGACTTCGGG   1986

BSNT_00811___   1990 GCGTTTGTTGATATCGGAGTCAAACAAGACGGGCTTGTGCATATCTCAAA   2039
                     ||||||||.||.|||||.||.|||||.||||||||.||.||.||.||.||
BL02210___ydc   1987 GCGTTTGTCGACATCGGCGTGAAACAGGACGGGCTCGTCCACATTTCCAA   2036

BSNT_00811___   2040 ATTGAGCAATCAATTCGTCAAGCATCCTCTTGATGTCGTATCTGTCGGCG   2089
                     ..|.|||.||...||||||||||||||.||.||.||.||.||.|||||.|
BL02210___ydc   2037 GCTCAGCCATTCCTTCGTCAAGCATCCGCTCGACGTTGTGTCGGTCGGGG   2086

BSNT_00811___   2090 ATATTGTGACAGTTTGGGTTGACGGCGTAGATGTACA------AAAAGGC   2133
                     |.||.||.||.||.|||||.||      ||||||..|      ||||||.
BL02210___ydc   2087 ACATCGTCACCGTATGGGTGGA------AGATGTCGACGCTGCAAAAGGA   2130

BSNT_00811___   2134 AGAGTATCGCTGTCTATGGTAAAATAA------   2160
                     ||.||.||..|.||.|||||||||.|.      
BL02210___ydc   2131 AGGGTCTCCTTATCGATGGTAAAAGATCGATAG   2163


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