Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00811 and BL02210
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:27
# Commandline: needle
# -asequence dna-align/BSNT_00811___ydcI.1.5803.seq
# -bsequence dna-align/BL02210___ydcI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00811___ydcI-BL02210___ydcI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00811___ydcI-BL02210___ydcI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00811___ydcI
# 2: BL02210___ydcI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2233
# Identity: 1605/2233 (71.9%)
# Similarity: 1605/2233 (71.9%)
# Gaps: 143/2233 ( 6.4%)
# Score: 5589.0
#
#
#=======================================
BSNT_00811___ 1 ATGGAAACGTCAGCCCTTTTAAAAC----AGCAAATTGCGAAAGAAATAG 46
|||||.||.|.||| .|.||.| |.|||||.||.|||||||..|
BL02210___ydc 1 ATGGATACTTTAGC----GTCAATCGTCAAACAAATCGCAAAAGAAACGG 46
BSNT_00811___ 47 GTTTATCACAAAAACACGTTGAAAGTGTCATCCGCCTGCTAGAAGACGGC 96
|..|..|.|.|||.||.||.||.||||||||.|...|..||||.||||||
BL02210___ydc 47 GGCTTGCGCCAAAGCATGTCGAGAGTGTCATTCAATTATTAGAGGACGGC 96
BSNT_00811___ 97 AATACAGTACCGTTTATTGCCCGGTATCGAAAAGAGCAGACGGGTTCAAT 146
||.||.||.||.||||||||..|.||.||||||||.||.|||||.||.||
BL02210___ydc 97 AACACCGTCCCCTTTATTGCGAGATACCGAAAAGAACAAACGGGCTCCAT 146
BSNT_00811___ 147 GGATGAGGTTCAGATTCAGACGATTTCTGAACGCTGGCAATACATACAAA 196
||||||.||.||.||.||.||.||.||.|||||||||..||||||.||..
BL02210___ydc 147 GGATGAAGTCCAAATACAAACTATCTCCGAACGCTGGGGATACATTCAGC 196
BSNT_00811___ 197 ACCTGAACCAGCGAAAAGAAGAAGTCATCAGGCTGATTG-----CAGAGC 241
|..|.||.|||||.|||||.|||||||||||||||||.| |||.||
BL02210___ydc 197 ATTTAAATCAGCGGAAAGACGAAGTCATCAGGCTGATCGATGAACAGGGC 246
BSNT_00811___ 242 AGGATAAACTGACAGATGATCTAAAAGGT-AAAATCGAGCAATCGGTGAA 290
|.|.|.|.|.|||||.|| |||.| .|.||.||..||.|||..||
BL02210___ydc 247 AAGCTGACCGGACAGCTG------AAGCTGGATATAGAAAAAGCGGACAA 290
BSNT_00811___ 291 GCTTCAGGAAGTGGAAGACCTTTACCGCCCTTATAAACAAAAACGCAAAA 340
|||.||||||||.||||||.|.|||.|.||.|.||||||||||||.||||
BL02210___ydc 291 GCTCCAGGAAGTTGAAGACTTATACAGACCGTTTAAACAAAAACGAAAAA 340
BSNT_00811___ 341 CAAAGGCGACAGTCGCCAAAAGCAAAGGCCTTGAGCCGCTTGCCGACTAT 390
|.||||||||..||||||||||||||||.|||||.||..|.||.||.|..
BL02210___ydc 341 CCAAGGCGACGATCGCCAAAAGCAAAGGGCTTGAACCTTTGGCTGATTTC 390
BSNT_00811___ 391 ATCCTGACACTTCCCC------AAGATGATCGTCTGGCAGC--AA--CTG 430
|||.|..|.||.||.| |||||| |.||||| || |.|
BL02210___ydc 391 ATCATCTCGCTCCCGCGTAATGAAGATG------TAGCAGCCGAAGCCCG 434
BSNT_00811___ 431 CAGACCAATACATCAGCGAAGAAAAAGAAGTGTTCACACGA-----GAAG 475
|| |.|||||.|..||||||||.||||| ||.|| ||||
BL02210___ydc 435 CA----AGTACATAAATGAAGAAAAGGAAGT-----CATGAGCGCCGAAG 475
BSNT_00811___ 476 AAGCGATTGAAGGCGCCAAGCACATTATTGCGGAACAAATCTCAGACGAG 525
|||||.|||||||.||.|||.||||..|.||.||||..|||||||||||.
BL02210___ydc 476 AAGCGCTTGAAGGAGCAAAGAACATACTGGCTGAACGGATCTCAGACGAA 525
BSNT_00811___ 526 CCGACCTTCAGAAAGTGGATTCGCCAGGAAACCTTCAAAAGAGGAACCAT 575
|||...|.|||.||||||||..|.|||||.||.||.|||||||||||..|
BL02210___ydc 526 CCGGAATACAGGAAGTGGATCAGGCAGGAGACTTTTAAAAGAGGAACGCT 575
BSNT_00811___ 576 TAAGTCCGCAGCCGGAAAG-TCGGCAGACACCGATGAGAAAAATGTGTAT 624
.||||||||.|| .|||| | ||.||..|.||||||||.||..|.|||
BL02210___ydc 576 GAAGTCCGCGGC--AAAAGAT--GCCGAAGCGGATGAGAAGAAAATCTAT 621
BSNT_00811___ 625 GAAATGTATTACGAGTATGAAGAGCCAATTGCAAAAGTTGTTCCGCATAG 674
|||||||||||.||.||.||||||||.|||..||||.|.|||||.|||.|
BL02210___ydc 622 GAAATGTATTATGAATACGAAGAGCCGATTCAAAAAATCGTTCCTCATCG 671
BSNT_00811___ 675 GGTGCTGGCAATGAACCGCGGCGAAAAAGAAGATATTTT-AAAG-GTAGC 722
.||.||.|||.|.|||||||||||||||||.||.||||| |.|| || |
BL02210___ydc 672 CGTACTCGCAGTTAACCGCGGCGAAAAAGAGGAGATTTTGAGAGCGT--C 719
BSNT_00811___ 723 GATCGAACCGCCTGCGGATCACATTAAGGCGTATTTAGAAAAACAAAT-- 770
|.||||.|||||.||.||.|.|||..|.||.||.||.|||||||..||
BL02210___ydc 720 GGTCGAGCCGCCGGCAGACCGCATCCAAGCTTACTTGGAAAAACGGATTT 769
BSNT_00811___ 771 --CATCAAA-------AATCGCTCAACA--TCCGTAAGAGAGATTTTGCA 809
||.|||| ||..||||||.| |||..||.||.|
BL02210___ydc 770 TACAACAAAAGCAAACAAGTGCTCAAGATGTCCTGAAAAGCG-------- 811
BSNT_00811___ 810 GGAGACAATTGAAGACAGCTATAAAAGGCTGATCCAGCCGGCAATCGAGC 859
|.||.||||||.|||||||..|.|||||.||||||.||||||||.
BL02210___ydc 812 -----CGATCGAAGACGGCTATAAGCGCCTGATTCAGCCGTCAATCGAGA 856
BSNT_00811___ 860 GTGAAATCAGGAAAGAGCTCTCAGAAAAAGCTGATGAACAGGCGATTCAT 909
|.||||||||.|||||..|..|.|||||.||.||.||.||.||||||||.
BL02210___ydc 857 GGGAAATCAGAAAAGAATTGACGGAAAAGGCGGAAGACCAAGCGATTCAC 906
BSNT_00811___ 910 ATTTTCTCAGAGAACTTGAGAAAGCTTCTTTTGCAGCCGCCGATGAAAGG 959
||.||..|.||.||..||.|.|||||.||..|||||||||||||||||||
BL02210___ydc 907 ATATTTGCCGAAAATCTGCGCAAGCTGCTGCTGCAGCCGCCGATGAAAGG 956
BSNT_00811___ 960 CAAAAC-CGTTCTCGGTGTTGACCCAGCCTTTCGAACCGGCTGTAAGCTC 1008
|||.| |||||||||.||.|||||.||.||.||.||.|||||.|||||.
BL02210___ydc 957 -AAAGCTCGTTCTCGGCGTCGACCCGGCATTCCGCACAGGCTGCAAGCTG 1005
BSNT_00811___ 1009 GCTGT-GTCAGATGAGACTGGAAAAGTCTTGAAAATTGATGTGATCTATC 1057
||.|| || .||||||||.|||||..|..|.||.||.||.||.||.||.|
BL02210___ydc 1006 GCAGTCGT-GGATGAGACGGGAAAGATGCTCAAGATCGACGTCATATACC 1054
BSNT_00811___ 1058 CGCATGCGCCAGTCAACAAAACAAAAGAAGC--CCAT-GAAAAAGTGAAA 1104
||||..|.||.|||| |.||.||||| .|| |||| |||||||| |||
BL02210___ydc 1055 CGCACCCTCCCGTCA--ATAAGAAAAG-CGCCGCCATCGAAAAAGT-AAA 1100
BSNT_00811___ 1105 AAG-ATTCTTGAGCAGTATCAAGTCGAGATGGTGGCGATCGGAAACGGCA 1153
|.| ||..|.||..|.|.||||.|||||.|..|.||.|||||.|||||.|
BL02210___ydc 1101 ACGCATCATCGAAGACTTTCAAATCGAGGTCATCGCAATCGGGAACGGAA 1150
BSNT_00811___ 1154 CAGCATCCAGAGAAACAGAACAATTCATCGTCAATGTACTGAAAGACATG 1203
|.|||||.|||||.||.|||||.||.||||.|.||.|..||||.|||||
BL02210___ydc 1151 CGGCATCAAGAGAGACGGAACAGTTTATCGCCGATCTCTTGAAGGACAT- 1199
BSNT_00811___ 1204 CCGCG-CAAAA---TTTATTATGTGATCGTCAATGAAGCGGGTGCAAGCG 1249
|| ||.|| |.||.|||.|||||||||||||||||||.||.||||
BL02210___ydc 1200 ---CGACAGAAAGGTGTACTATCTGATCGTCAATGAAGCGGGAGCCAGCG 1246
BSNT_00811___ 1250 TCTATTCGGCTTCAGAGCTGGCCCGAGAAGAATTCCCTGACCTTAAGGTT 1299
||||||||||.||||||||.||..|.|||||||||||.||.||..|||||
BL02210___ydc 1247 TCTATTCGGCATCAGAGCTTGCGAGGGAAGAATTCCCCGATCTGCAGGTT 1296
BSNT_00811___ 1300 GAAGAGCGCAGTGCCGTGTCTATTGCGCGAAGACTTCAAGACCCGCTTGC 1349
|||||.||.||.||||||||.||.||.||.|||||.|||||||||||.||
BL02210___ydc 1297 GAAGAACGGAGCGCCGTGTCGATCGCACGCAGACTCCAAGACCCGCTCGC 1346
BSNT_00811___ 1350 GGAGCTCGTTAAAATCGATCCGAAGTCTGTTGGTGTCGGACAGTATCAGC 1399
.||.|||||.|||||||||||.|||||.||.||.|||||.|||||.||||
BL02210___ydc 1347 CGAACTCGTCAAAATCGATCCCAAGTCGGTCGGGGTCGGCCAGTACCAGC 1396
BSNT_00811___ 1400 ATGACGTCAGCC---AAAAACGCTTAAATGAATCTCTGCGGTTTGTCGTC 1446
|.||.||||||| |||||| ||||.||.||.||.||.||||||||.
BL02210___ydc 1397 ACGATGTCAGCCAGAAAAAAC---TAAACGATTCGCTCCGCTTTGTCGTG 1443
BSNT_00811___ 1447 GAAACGGTCGTAAACCAGGTGGGAGTAAACGTCAACACAGCCTCCGCCGC 1496
|||||.|||||.||||||||.||.||.|||||.||.||.||.||.|||||
BL02210___ydc 1444 GAAACCGTCGTCAACCAGGTCGGCGTCAACGTGAATACTGCATCAGCCGC 1493
BSNT_00811___ 1497 GCTGCTT-CAGTATGTAGCGGGATTATCGAAGTCTGTAGCAGGCAACGTT 1545
||| ||| ||.|||||.||.|||.|||||||..|.||.||.|.||||.|.
BL02210___ydc 1494 GCT-CTTGCAATATGTGGCCGGACTATCGAAAACAGTCGCGGCCAACATC 1542
BSNT_00811___ 1546 GTCAAAAAACGTGAGGAAATCGGAAAGTTTTCAAATCGAAAAGAACTGAA 1595
|||||||||||.||.||.||||||||.||..|.|..||.|||||.|||||
BL02210___ydc 1543 GTCAAAAAACGGGATGAGATCGGAAAATTCACGAGCCGGAAAGAGCTGAA 1592
BSNT_00811___ 1596 GGACATCCCAAGGTTAGGTGCGAAAACCTACGAGCAATGTATCGGTTTCT 1645
.|||||.||..|..|.||.||||||||.||.||||||||.|||||.||.|
BL02210___ydc 1593 AGACATTCCGCGCCTGGGCGCGAAAACGTATGAGCAATGCATCGGCTTTT 1642
BSNT_00811___ 1646 TAAGAGTGCAGGAAGG-GACAGAGCCTTTGGATAGAACAGGCATCCACCC 1694
||||.||||..||.|| || .||.||..|.||..|.||||||||||||||
BL02210___ydc 1643 TAAGGGTGCCTGACGGCGA-TGAACCGCTCGACCGGACAGGCATCCACCC 1691
BSNT_00811___ 1695 GGAAAGCTATAAAGAAACAAAAGCACTTTTGAAAAAACTCGGACTTTCAA 1744
|||.|||||||||||.||.|.||..||..|||||||.||.||.|||||||
BL02210___ydc 1692 GGAGAGCTATAAAGAGACGAGAGAGCTCCTGAAAAAGCTGGGCCTTTCAA 1741
BSNT_00811___ 1745 CAGAACATATCGGCACGGCGGAATTGA-----AGGACAAAATCAATCAGC 1789
|||..||.|||||||| ||..|| |||||||||||||..|.|
BL02210___ydc 1742 CAGCCCAAATCGGCAC-----AAAAGAGCTTCAGGACAAAATCAACGAAC 1786
BSNT_00811___ 1790 TGGCGCTCTCTGAAACGGCAAAAGAGCTGGGAATCGGCGAAATCACTCTG 1839
||....|.||.|||.|.||..||.|||||||.|||||.||||||||.|||
BL02210___ydc 1787 TGAATATTTCCGAAGCAGCTGAACAGCTGGGGATCGGGGAAATCACCCTG 1836
BSNT_00811___ 1840 AAAGACATTTGTGAACAGCTGACAAGGCCGGAACGCGATCCGCGCGATGA 1889
|||||||||||.|..||||||||.|||||.||.|||||||||.|.|||||
BL02210___ydc 1837 AAAGACATTTGCGCCCAGCTGACGAGGCCTGAGCGCGATCCGAGGGATGA 1886
BSNT_00811___ 1890 GGTGCCTAAGCCTTTGCTGAAAACAGACGTCCTTCAGCTGGAAGATTTGA 1939
.||.|||||.||..|..|.|||||.||.||.|||||..||||.||.||.|
BL02210___ydc 1887 AGTCCCTAAACCGCTCTTAAAAACCGATGTGCTTCAATTGGAGGACTTAA 1936
BSNT_00811___ 1940 AAGAGGGAATGGAACTGCAGGGCACCGTGCGCAATGTAGTGGACTTCGGA 1989
|||||||.||||||||.|||||.||.|||||.||.||.||.||||||||.
BL02210___ydc 1937 AAGAGGGGATGGAACTTCAGGGGACAGTGCGGAACGTCGTTGACTTCGGG 1986
BSNT_00811___ 1990 GCGTTTGTTGATATCGGAGTCAAACAAGACGGGCTTGTGCATATCTCAAA 2039
||||||||.||.|||||.||.|||||.||||||||.||.||.||.||.||
BL02210___ydc 1987 GCGTTTGTCGACATCGGCGTGAAACAGGACGGGCTCGTCCACATTTCCAA 2036
BSNT_00811___ 2040 ATTGAGCAATCAATTCGTCAAGCATCCTCTTGATGTCGTATCTGTCGGCG 2089
..|.|||.||...||||||||||||||.||.||.||.||.||.|||||.|
BL02210___ydc 2037 GCTCAGCCATTCCTTCGTCAAGCATCCGCTCGACGTTGTGTCGGTCGGGG 2086
BSNT_00811___ 2090 ATATTGTGACAGTTTGGGTTGACGGCGTAGATGTACA------AAAAGGC 2133
|.||.||.||.||.|||||.|| ||||||..| ||||||.
BL02210___ydc 2087 ACATCGTCACCGTATGGGTGGA------AGATGTCGACGCTGCAAAAGGA 2130
BSNT_00811___ 2134 AGAGTATCGCTGTCTATGGTAAAATAA------ 2160
||.||.||..|.||.|||||||||.|.
BL02210___ydc 2131 AGGGTCTCCTTATCGATGGTAAAAGATCGATAG 2163
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