Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00789 and BL02199
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:25
# Commandline: needle
# -asequence dna-align/BSNT_00789___ydbT.1.5803.seq
# -bsequence dna-align/BL02199___ydbT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00789___ydbT-BL02199___ydbT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00789___ydbT-BL02199___ydbT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00789___ydbT
# 2: BL02199___ydbT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1624
# Identity: 998/1624 (61.5%)
# Similarity: 998/1624 (61.5%)
# Gaps: 287/1624 (17.7%)
# Score: 2770.0
#
#
#=======================================
BSNT_00789___ 1 ---ATGTCTGAACCGAAACGCCTGCACCCGGCGGCAGTCATTTTGAA-TT 46
|||||||||||||.||||.|||||||.||.||.||||||.|.|| ||
BL02199___ydb 1 ATGATGTCTGAACCGAGACGCATGCACCCTGCCGCCGTCATTCTCAACTT 50
BSNT_00789___ 47 TAT-----GCCATACCATTATTCAAACGATAAAAAATATCATTCTGCCAT 91
||| ||| ||.||.|.|||.|.||||||.|.|| |||
BL02199___ydb 51 TATCAAAGGCC------TTGTTGAGACGGTTAAAAATTTTAT-----CAT 89
BSNT_00789___ 92 TCTTTTTTGTGT----ATATTGTCAATTCAAAC-CATACTGTC----CGT 132
||..|||.|.|| ||.||.|.||.||||.| ||.||.||| .|.
BL02199___ydb 90 TCCATTTGGCGTGGTGATTTTTTTAAATCAATCGCAAACAGTCAAAATGA 139
BSNT_00789___ 133 TTTTACGGAGCCATTGCGCTCGG-TGTGCTGTTCATC-TGGCTT--GTAG 178
| |||.||.|| |.||| .||||||||..|| |.|||| ||.|
BL02199___ydb 140 T-------AGCGATCGC-CGCGGCCGTGCTGTTTTTCATTGCTTTGGTTG 181
BSNT_00789___ 179 CGGCAAGCATTATCAAATGGAGAAGGTTTACCTATCGAATTGAAGATGAT 228
.|.|.|||||.|||||.|||||.|..|||||.||.||.||.|||||.|||
BL02199___ydb 182 TGACGAGCATCATCAAGTGGAGCAAATTTACATACCGTATCGAAGAGGAT 231
BSNT_00789___ 229 GAATTTAGAATTGAAGAAGGCTTATTTGTTACGAAAAAGCGATACATATC 278
|||||..||||.||.||||||||..|...||.||||||..|.||.||..|
BL02199___ydb 232 GAATTGCGAATAGAGGAAGGCTTGATCAATAAGAAAAAAAGGTATATTCC 281
BSNT_00789___ 279 GATTGATCGGATTCAAACAATGAATACGAGCGCGGGCCTTGTCCAGCAAA 328
|||.||.|||||||||||.||.||.||.|||||.|||||..|.||.||||
BL02199___ydb 282 GATCGAACGGATTCAAACGATCAACACAAGCGCAGGCCTCATTCAACAAA 331
BSNT_00789___ 329 TCTTTAAGCTTGTGAAGCTGCAAATTGAAACAGCAGGCGGAGGCAAGGAG 378
|.||.|||||.||||||||.|||.|.|||||.|||.|||||||.|.|||.
BL02199___ydb 332 TGTTCAAGCTGGTGAAGCTTCAAGTCGAAACGGCAAGCGGAGGAACGGAA 381
BSNT_00789___ 379 GCAGAAGCCGTTCTTTC------TGCTATTTCTGTTGAAGAAGCGGAACG 422
||.|||| |||| .||.|||.|....|.||||||.|||||
BL02199___ydb 382 GCGGAAG------TTTCCCTGGTCGCCATTACCCAGGCAGAAGCCGAACG 425
BSNT_00789___ 423 CATCAAAGAAGCTGTCTTT-----AAGAAAAAAGCG--CAAAGA------ 459
.||..|..|||| .|||| |.|||||||||| ..||||
BL02199___ydb 426 TATTCAGCAAGC--GCTTTTCGAAAGGAAAAAAGCGGCGGAAGACACGGG 473
BSNT_00789___ 460 ---CGA----------------GAAAATGAACTTGATGAAGAACGGC--T 488
||| ||| |||..||.|||||| ||| .
BL02199___ydb 474 GACCGATGTCCCGGTTCCGCTGGAA---GAAACTGCTGAAGA--GGCGGA 518
BSNT_00789___ 489 TGAACCTGAAGAGGAGTTGGTTCCGGCCGT--TGAGGTGCAAGAGCACTA 536
.|||.|.|||||| ||| || |||.||.|||
BL02199___ydb 519 GGAAGCGGAAGAG---------CCG---GTAATGATGTACAA-------- 548
BSNT_00789___ 537 TCGCATGAACGCGAAAGAATTGCTCTT---GGCCGCTTCTACCTCCGGCG 583
.||||.||...|.|| |||||| .||||||||.|||||..|||
BL02199___ydb 549 ---AATGACCGGCCAGGA---GCTCTTAACCGCCGCTTCAACCTCAAGCG 592
BSNT_00789___ 584 GAATCGGAGTCATTATCTCCGCTGTATTTGCACTTATTTC---CCAGCTT 630
|.|||||.||.|||||.||.|..||||| |.|||.|||| |.|| |.
BL02199___ydb 593 GCATCGGCGTTATTATTTCAGGGGTATT--CGCTTTTTTCACTCAAG-TC 639
BSNT_00789___ 631 GATGA--------AGTGCTGCCAATGGATTGGTTATTTGATAAATTTTCC 672
||||| |.| ||||||||.|.|.|||....|||.|.
BL02199___ydb 640 GATGATTTCTTTGATT--------TGGATTGGCTGTATGACCGCTTTGCT 681
BSNT_00789___ 673 TTCCTT----CAGC-------ACGCCAGTATTGGTATTTACGCGGTACTC 711
|| || |||| .|||| ||..|.|.|||..| |
BL02199___ydb 682 TT--TTTGAACAGCGCAGGTGCCGCC-GTCATCGCATTGGC--------C 720
BSNT_00789___ 712 GTTTTTATCGGTT----TATTTATCGCCTGGATTTTCAGCATCG-CGGGC 756
|..||| ||| |.||.|||||.|||.|..||||||||| ||||
BL02199___ydb 721 GCCTTT----GTTGCCCTTTTCATCGCATGGCTGCTCAGCATCGTCGGG- 765
BSNT_00789___ 757 ATGATGTTTAGATACGCGAACTTTCAAATCATAAAAAAAGAGCAGGAACT 806
|||.|.||.|.|||.|||||.|||....||.|....||||||.|.|||.|
BL02199___ydb 766 ATGCTTTTGAAATATGCGAATTTTACTGTCGTGCGTAAAGAGAAAGAAAT 815
BSNT_00789___ 807 GGTGATTTCAAGGGGAATTATTGAAAAACATCAAGTCACGATTCCGTT-- 854
.||.|||||.||.||..|.||||||||.||.|||.|||||||||||.|
BL02199___ydb 816 CGTCATTTCCAGAGGGCTGATTGAAAAGCAACAAATCACGATTCCGCTCC 865
BSNT_00789___ 855 -GCGAAAAATACAAGCCATTAAAATCAAAGAAAATATCATTCGCCAGCTT 903
||| .||.|||||.|||||||||||.||.|...|.||..|.||||.|
BL02199___ydb 866 AGCG---GATTCAAGCGATTAAAATCAAGGAGAGCCTGATCAGGCAGCCT 912
BSNT_00789___ 904 TTCGGATTTGTAACGGTGTCTATCGTCAGCGCAGGAGGCGGCGACCGGGA 953
||.|||.|||.|.|.||..|.||||||||||||||.||...||.||.|||
BL02199___ydb 913 TTTGGACTTGCAGCCGTCACGATCGTCAGCGCAGGCGGAAACGTCCTGGA 962
BSNT_00789___ 954 AAAAGAAGAAGGCGCTTTGA-CCATTCTCTTTCCAATGATTCATAAAAAA 1002
|.||||..|| |.| ||||..|.||||||||.| |||..|||||
BL02199___ydb 963 AGAAGATAAA-------TCAGCCATCTTATTTCCAATCA-TCAGCAAAAA 1004
BSNT_00789___ 1003 AAGCTTC------CGTACATGCTC--CGAA--CATTTACGCCGGAATATA 1042
||...|| ||| ||| |||| |||| |||||.|||.
BL02199___ydb 1005 AATAATCAATCAGCGT-----CTCGGCGAATTCATT----CCGGATTATG 1045
BSNT_00789___ 1043 CGCTGGAAGAAAACTGCCGA-------CGCCTGCCGCGGCGCGCGTTGAA 1085
|||.|||||| ||| |||.|||||...||||||.||..
BL02199___ydb 1046 CGCCGGAAGA-------CGATTTGAACCGCTTGCCGAAACGCGCGCTGCG 1088
BSNT_00789___ 1086 ACGCTATTTGTTCCG----TTCTGTCATTTTTTCAC--TCTTTTTGATCA 1129
.||||||.|..|.|| |.|||.|...||.||.| ||.||..| |.
BL02199___ydb 1089 CCGCTATATCCTGCGCGCATCCTGGCCGGTTCTCGCCGTCGTTCCG--CT 1136
BSNT_00789___ 1130 TTCCGTTATGTATCTTCTTTCAGCCATGGGGCTATCTGTCAGTCATCCTG 1179
||||.||.|| ||||.|||||||||||||.||||.|...|..||
BL02199___ydb 1137 TTCCATTCTG-------TTTCCGCCATGGGGCTATTTGTCCGCTGTATTG 1179
BSNT_00789___ 1180 CTGCCGATAGAGTTGCTCTTCGGCTATCTCGCGTATAAAGAGGCTGCATG 1229
.|.||..|..|.|.|.||.||||||||.||.|.||....||.||.|.|||
BL02199___ydb 1180 ATTCCTTTTTACTGGATCATCGGCTATTTCTCATACCGCGATGCCGGATG 1229
BSNT_00789___ 1230 GACGATCAACGG--GGACCGTCTTCAGCTGACGTCTAGATTTATAGGCAG 1277
||.|||||.||| |.|...||.||| ||.|.||..|.||.||.|||||
BL02199___ydb 1230 GAAGATCAGCGGCAGCAAAATCATCA--TGTCATCGCGCTTCATCGGCAG 1277
BSNT_00789___ 1278 AACAACCGC---CATTGTACTGAAAAAACGAATGCAGGTCTGC-AAGTTC 1323
||||||||| ||||..|| ..|..||.||||||||.|.| ||| ||
BL02199___ydb 1278 AACAACCGCTGTCATTCAAC---GCAGGCGCATGCAGGTTTTCGAAG-TC 1323
BSNT_00789___ 1324 AGCCAATCCTATTTCCA--AAAGAAAGGCCGCTTGTATACCATTTCTACT 1371
||||..||.|||||||| ..||||| .|.|||||| |.|.|||..|||.
BL02199___ydb 1324 AGCCGCTCGTATTTCCAGCGCAGAAA-ACAGCTTGT-TTCGATTCATACA 1371
BSNT_00789___ 1372 TCAGTGAAATCATCGAGCCAT------ATGGAAGAA-TTAACGGTGAGGG 1414
|||...|||||.|| | |||| |||| ||..|||||...|
BL02199___ydb 1372 TCAACAAAATCGTC------TGTTTTAATGG-AGAAGTTTTCGGTGGCTG 1414
BSNT_00789___ 1415 ATGTAGGTGAAGAG---GATGCAGCC---TTCATTTTAAACTGGTACTCA 1458
|||| |||.||| |||.|.|.| .|||||..| |||||.|||
BL02199___ydb 1415 ATGT---TGAGGAGAAAGATTCGGACGATATCATTGCA---TGGTATTCA 1458
BSNT_00789___ 1459 TATGAAAA---AGCGGACGGTTAA 1479
|||||||| ||.|.||||||||
BL02199___ydb 1459 TATGAAAAAAGAGTGAACGGTTAA 1482
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