Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00767 and BL02188
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:24
# Commandline: needle
# -asequence dna-align/BSNT_00767___dctP.1.5803.seq
# -bsequence dna-align/BL02188.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00767___dctP-BL02188.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00767___dctP-BL02188.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00767___dctP
# 2: BL02188
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1527
# Identity: 732/1527 (47.9%)
# Similarity: 732/1527 (47.9%)
# Gaps: 543/1527 (35.6%)
# Score: 1365.0
#
#
#=======================================
BSNT_00767___ 1 ATGAAACTGTT-----TAAAAATTTAACAGTTCAGGTCATAACCGCGGTC 45
||||| ||| .||||||| ||.|.|||..|.
BL02188 1 ATGAA---GTTAGCAACAAAAATT--------------ATTATCGCTCTA 33
BSNT_00767___ 46 ATCATCGGGGTCA-TTGTCGG------GCTG---GTC---TGGCCGGAT- 81
.|..||||.| || |.||||| .||| ||| |..||||||
BL02188 34 TTGCTCGGTG-CAGTCGTCGGTATTATACTGAACGTCACTTCACCGGATT 82
BSNT_00767___ 82 --GTCGGCAAAGAAATGAAACCGCTTGGCGATACATTTATCAA------- 122
.||.|||| |||| .||||||||.| |
BL02188 83 TATTCAGCAA------------GCTT---AATACATTTTT--ATTCGGGC 115
BSNT_00767___ 123 CGCT-------------GTTAA---AAT---GGTGATC---GCACCAATT 150
|||| .|||| ||| |.||.|| |.|||.|||
BL02188 116 CGCTCGGCACGATCTTCCTTAACTTAATCAAGATGCTCGTTGTACCGATT 165
BSNT_00767___ 151 ATTTTCTTCACAATCGTTCTC--------GGGATTGCAAAAATGGGCGAT 192
.||||||| ||||| |||.|.|||..|.|.||.|||
BL02188 166 GTTTTCTT--------TTCTCTGACTTTAGGGGTAGCAGGACTTGGAGAT 207
BSNT_00767___ 193 ATGAAGAAGGTTGGAAAAGTAGGGGGAAAAGCGTT--------------T 228
...|||||..|.||.|.|.|.||.|..|||.||.| |
BL02188 208 CCAAAGAAATTGGGCAGAATCGGTGCCAAAACGATTTCTTTCTTTTTAAT 257
BSNT_00767___ 229 ATCTATTTCGAGGTTGTCACCACCCTCGCACTCATTATCGGTTTATTTGT 278
|.|||.|.|.| |||.|| |.|||||||| |.|||
BL02188 258 AACTACTGCAA--TTGCCA------------TTATTATCGG---ACTTG- 289
BSNT_00767___ 279 CGTCAATATTATGAAGCCGGGTGCGGGTCTTGATTACAGCAAGCTTGAAA 328
|.||| ||| |||.| ||.|||.|.||.||
BL02188 290 ------TTTTA-----------GCG----TTGGT--CATCAAACCTGGAA 316
BSNT_00767___ 329 AGGGAGATGTATC---ACA----ATACA-------CGCAAAATGGCGGTC 364
.| ||| ||| ||||| ||.||.|| ||
BL02188 317 CG--------ATCGGAACATATGATACAAGCGCTGCGGAATAT-----TC 353
BSNT_00767___ 365 AG----GGAATCGACTGGATTGAATTTGTTACAC--------ACATTGTT 402
|| |.||.||.| ..|.||||.|.|||| |.||..||
BL02188 354 AGCCCAGAAAGCGCC----AAGCATTTCTGACACGCTTTTGAATATCATT 399
BSNT_00767___ 403 CCATCCAATATGGTTGATGCCTTCGCAAAAGGGGACATTTTGCAGGTCTT 452
||..|.||...||||.|.||..|.||..||||..|.||..||||..||
BL02188 400 CCGACAAACCCGGTTCAGGCAATGGCTGAAGGAAATATGCTGCAAATC-- 447
BSNT_00767___ 453 ATTCTTTTCTATTCTTTTCGGAGTGGGTCTTGCGGCATTA--------GG 494
|||..|||| |.|.|||.| ||.||||| |||.|||| ||
BL02188 448 ATTGCTTTC--TCCATTTTG--GTCGGTCT--CGGAATTACGATGCTGGG 491
BSNT_00767___ 495 CGAAAAAG-GGA----------AAAGCGTCATTGATTTCTTCGACAAGGT 533
|.|||||| ||| ||| ||..|||| |||.|||
BL02188 492 CAAAAAAGCGGACGCTCTTCTCAAA--GTGGTTGA--------ACAGGGT 531
BSNT_00767___ 534 TTCTCACGTTTTTTTCAAAATTATCGGCTACATTATGCGTGCCGCGCCAA 583
||..|||.| ||.|| ||.||..|.|||
BL02188 532 ------------------AACGATCTG----ATGAT--GTACCTGGTCAA 557
BSNT_00767___ 584 TCGGGGCA-----TTCGGGGCG-ATGGCGTATACAATCGGACACTTCGGG 627
||..|.|| ||||.|.|| |.|| |||..|| ||
BL02188 558 TCTTGTCATGAAGTTCGCGCCGTACGG----TACGTTC----------GG 593
BSNT_00767___ 628 CTCGATT-------CCATC--AAACC---GCTGGCAAGC--TTAATG--A 661
||.|||| |.||| ||.|| |||||.|.|| ||||.| |
BL02188 594 CTTGATTGCCGGGGCAATCGGAAGCCAGGGCTGGGACGCCATTAAAGCAA 643
BSNT_00767___ 662 TGTCTGTTTATATTA----CGATGTTC-----CTGTTCGTATTTGTTGCT 702
||....|||||||.| ||.|.||| |||||| |||
BL02188 644 TGGGGCTTTATATGATCGTCGTTATTCTGGCGCTGTTC--ATT------- 684
BSNT_00767___ 703 TTAAATATCATCTGCA-AGCTTTACG-------GATTCAGCCTGTGGAA- 743
.|||.||||..|| | |||| ||||..||.|.|||.|
BL02188 685 ---CATACCATCGTCACA----TACGGCGCAGCGATTGCGCTTCTGGCAA 727
BSNT_00767___ 744 ----TTACCTTCGC-----TTCATTAAGGAT------GAGCTTCTGATCG 778
..||| ||| |||.||||.||| |||.|| .
BL02188 728 AGCGGAACC--CGCTCACATTCTTTAAAGATTTTTCAGAGGTT------A 769
BSNT_00767___ 779 TGCTTG--GCACAAGCTCTTC--------------CGAATCGGTGCTTCC 812
|||||| || |||| |.|..||..||||||
BL02188 770 TGCTTGTTGC-------CTTCAGTACGTCCAGCAGCAACGCGACGCTTCC 812
BSNT_00767___ 813 GCGTAT-GATGGAT-------AAAATGGAGCGCTACGGCTGTTCCAAATC 854
| ||.| ||||||| ||| ||..||| |...||||||.|.|
BL02188 813 G-GTTTCGATGGATGTCGCTCAAA---GAAAGCT--GAAAGTTCCAGAGC 856
BSNT_00767___ 855 CGTTGTCGGGCTAGTTATTCCGAC-----GGGCTATTCGTTTAACCTCGA 899
||.|.||..||| ||.|.|.|.| |.|||| ||.|.|||.|.||
BL02188 857 CGATCTCAAGCT--TTGTCCAGCCGCTCGGAGCTA--CGATCAACATGGA 902
BSNT_00767___ 900 CGGCAC----ATCCATTTATTTAT-CAA----TGGCGACTGTCTTTCTGG 940
|||.|| ||| || ||| ||||.||.||||||.|.|
BL02188 903 CGGAACGGCGATC---------ATGCAAGGGGTGGCAACAGTCTTTATCG 943
BSNT_00767___ 941 CACAGGTGTTTGG-AGTAGAC------CTCAGCATCGGCCAGCAAATTAC 983
|.|||||||..|| |.| ||| |||| || ||||...|.|.
BL02188 944 CTCAGGTGTACGGCAAT-GACCTGTCGCTCA-CA-----CAGCTGTTGAT 986
BSNT_00767___ 984 GATTATCCTC------GTTCTGATGCTGACATCGAAGGGAGCGGCAGGTG 1027
|.||.|.||| ||.|| |||...|||| |||.|.||.||||
BL02188 987 GGTTGTTCTCACGGCAGTGCT--TGCCAGCATC----GGAACAGCGGGTG 1030
BSNT_00767___ 1028 TGACAGGAAGCGGATTTATCGTCCTTGCC--------TCAACGCTGTCAG 1069
|..|.||...||||.|.||..|.||.||| ||||
BL02188 1031 TTCCGGGTGTCGGACTCATTATGCTCGCCATGGTTCTTCAA--------- 1071
BSNT_00767___ 1070 CGCTGCAG--GTCATTCCGCTGGAGGGTCTTGCACTCCTGCTCGGGGTCG 1117
.||| |.|.||||..|.|||||..||||.||..|..|.||..|.|
BL02188 1072 ----ACAGTTGGCCTTCCAGTTGAGGGAATTGCGCTAATATTGGGAATTG 1117
BSNT_00767___ 1118 ACCGTTT------CATGAGT-GAAGGAAGAGCCATTGTGAACCTAATCGG 1160
||||..| |||||.| |.|.| || |||.||...||..||
BL02188 1118 ACCGACTTCTGGACATGATTCGTACG----GC---TGTCAATACAACAGG 1160
BSNT_00767___ 1161 AAACGGAATCGC--CA----CGATCATTGTTGCCAAAAGCGAAAATGAAT 1204
|| || || || ||.||||.||..||.|.|..|||||
BL02188 1161 ---CG--AT-GCAGCATGTGCGGTCATCGTCACCGAGACGGAAAA----- 1199
BSNT_00767___ 1205 TTGATGAAGCA----AAAAGCGTAG--------AGGCTGTTGAAG---GC 1239
|||.|| ||||.||.|| || ||||| .|
BL02188 1200 -----GAAACACGGCAAAATCGAAGCCCCTCATAG-----TGAAGTGTCC 1239
BSNT_00767___ 1240 ATGAAAAAAATGAAAACAGCAGTCTGA 1266
.||.||
BL02188 1240 GTGTAA--------------------- 1245
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