Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04889 and BL02187
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:05
# Commandline: needle
# -asequence dna-align/BSNT_04889.1.5803.seq
# -bsequence dna-align/BL02187___yusX.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04889-BL02187___yusX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04889-BL02187___yusX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04889
# 2: BL02187___yusX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1906
# Identity: 1264/1906 (66.3%)
# Similarity: 1264/1906 (66.3%)
# Gaps: 230/1906 (12.1%)
# Score: 3971.0
#
#
#=======================================
BSNT_04889 1 ATGGCGCTGCA-------AGGGGTAGGCCAAAGATGGGATCTTGA--TTC 41
|||.|..|.|| |.||.||.| ||||||||.|| ||
BL02187___yus 1 ATGACATTTCATCAACTTAAGGATACG-------TGGGATCTCGAGGTT- 42
BSNT_04889 42 ATTTTTTAAGGGCGGAAGCCAATCGGAAGAATT----CAAAGGTTATATT 87
||.|||||.|||||.|||...||.|..||||| |||...||| |.|
BL02187___yus 43 -TTCTTTAAAGGCGGGAGCGGCTCCGCCGAATTCCGCCAATATTTA-AAT 90
BSNT_04889 88 GAGAAGCTGTCACAAAGTCTGCGTGCA--TTTCAAGAC---------AGG 126
|||| |.| |||..||||.|.|| |||.|| || |||
BL02187___yus 91 GAGA-----TTA-AAACACTGCTTTCAACTTTTAA-ACGTTCGGCCGAGG 133
BSNT_04889 127 -----ACTGATGCGTTTC----AGGTGCC----TGAATCGCCTGAAGAGG 163
|| |||.|| ||..||| ||||| ||||
BL02187___yus 134 CTCTTAC-----CGTCTCAAAAAGCGGCCTTGATGAAT----TGAA---- 170
BSNT_04889 164 CTGAAGGGCTGACCGCG----TTG-----CTTGAT-TTATTCGAACAGAC 203
.|||..|||| ||| ||| .||||| ||| |.
BL02187___yus 171 -AGAAACGCTG---GCGCTTTTTGAAACAATTGATGTTA---------AA 207
BSNT_04889 204 ATCCGTCAAGCTTCAGCAGGCCGGCGCGTTTGTTGCCTGCCTCCAGGCCC 253
|||||..|| ||.|.|||.|||||.|..||.|||||.||||
BL02187___yus 208 ATCCGCGAA----------GCAGACGCTTTTGTCGGATGTCTCCAAGCCC 247
BSNT_04889 254 AGAATATCAATGATCAAAAGGCTATAGAGCATCAGGCACTCA-------- 295
||.|.|.|...|||..||||||.| |.||.||.|
BL02187___yus 248 AGGACACCGCGGATTTAAAGGCGA---------ATGCCCTTAATTTTGAG 288
BSNT_04889 296 -TGAACCGGCTTTCCGCAGATTTTCAATCGTCGCTCGT--TACATTAGAT 342
|.|.||||||..|.||.|||...||...|.||||.|| |.|.|.|.|.
BL02187___yus 289 GTCACCCGGCTCGCTGCCGATGCGCAGAAGGCGCTGGTCGTGCTTGACAG 338
BSNT_04889 343 CATAAACTTGTGGACGTAGATCAAGACGTGTGGAAT--GAATTGCTA--- 387
| |||.|| |.|||.|..|.|.| |||.|||| ||| ||.|
BL02187___yus 339 C--AAATTT---GCCGTTGTCCCAAA--TGTAGAATGGGAA--GCGATCC 379
BSNT_04889 388 -ACAAAACCGGGATTAAGA--------GATATATCTTACATATTAAATGA 428
.||| |||.|| | |||||..||||.||.||.|||||
BL02187___yus 380 TTCAA------GATGAA-AGCATTTCCGATATCGCTTATATTTTGAATGA 422
BSNT_04889 429 AAGAAGACAGAGGGTTGCCGAAAAGCTTAGCCCCGGTAAAGAAAAACTGA 478
.||||||.||.||||..|.|||||||||||..|||...|.||||.|.|||
BL02187___yus 423 GAGAAGAGAGCGGGTAACGGAAAAGCTTAGTTCCGAACAGGAAACATTGA 472
BSNT_04889 479 T---CGGGAACCTTG-CCGTGGACGGATATCACGCTTGGAGTGACTTATA 524
| .|| |||| |.||.|||||||||||.||.|||.|.||..|.||
BL02187___yus 473 TTCAAGG----CTTGTCTGTTGACGGATATCATGCCTGGGGCGATATGTA 518
BSNT_04889 525 CAATATGGTTGTCGGGAAAATGACGATCCCGTATGGGGAAAATGGTGAAA 574
|.|.|...|.||||...||||....||.|||||||..|||.||||.||.|
BL02187___yus 519 CGACAGCATCGTCGACCAAATTCAAATTCCGTATGAAGAAGATGGCGAGA 568
BSNT_04889 575 ACAAGCAAT--TGTCTGTCGGTCAGGCGGAGAATATGATGGACCATCAAG 622
..|| ||| ||||||||||.||||||.||||..||| ||||.|.
BL02187___yus 569 CGAA--AATTCTGTCTGTCGGACAGGCGCAGAACCTGA-----CATCTAA 611
BSNT_04889 623 ACCGTACTGTCAGAAAAA---------CAGTATATGAACGTTTCCGCCA- 662
|| |||.||||||.| |.||||..|||..|||...|||
BL02187___yus 612 AC----CTGACAGAAAGATCCGCCGCTCCGTATCGGAAAATTTGGACCAC 657
BSNT_04889 663 AGCTTGGGAGAGCAAGCAAGATATTTTCAGCAACACGCTGAATCATTTGG 712
.|||.||.|.||||.|| .|||.|..||||||.||||||||||||..|.|
BL02187___yus 658 GGCTGGGAACAGCACGC-TGATTTGCTCAGCAGCACGCTGAATCACCTCG 706
BSNT_04889 713 CGGGATTCCGGCTCGAAAC--CTATAAGGCGCGTGGCTGGGAGAATGTCC 760
|.||.|||.|.|| .||| ||||.|||||.|.||||||||.|||||..
BL02187___yus 707 CCGGTTTCAGACT--GAACGTCTATGAGGCGAGAGGCTGGGACAATGTAT 754
BSNT_04889 761 TGAAGGAACCGCTGCAAATTAACAGGATGAAAAAAGAAACACTTGATACG 810
||||.|||||||||.|.||.|||.|.|||||..|.|||||.||||||...
BL02187___yus 755 TGAAAGAACCGCTGGACATCAACCGCATGAAGCAGGAAACCCTTGATGTC 804
BSNT_04889 811 ATGTGGCAGGTCATCACTGAAAACAAGAAGCCGTTCGTTCAG----TTTT 856
||||||||||||||.|.|||..|.||.|||||||| |.||| |.||
BL02187___yus 805 ATGTGGCAGGTCATTATTGATCATAAAAAGCCGTT--TGCAGACTATCTT 852
BSNT_04889 857 TGAACCGGAAAGCATCCATGCTCGGCCTTGAAAAACTCAGCTGGTACGAT 906
| .||||||.||.||..|||||||.||.||.|||||.||||||||.||.
BL02187___yus 853 T--CCCGGAAGGCGTCTTTGCTCGGACTGGATAAACTGAGCTGGTATGAC 900
BSNT_04889 907 GTCGAGGCACCGATCGGTTCTGACGGAAAGGTCTATTCGTAT---GATGA 953
|||||.||.|||||||||||.|..|.|||||..||||||||| ||.|.
BL02187___yus 901 GTCGAAGCGCCGATCGGTTCAGCAGCAAAGGAATATTCGTATCAAGAGGC 950
BSNT_04889 954 AGCCGCAAATATCATTACCAGCCAGTTTTCAACGTTTGGCAAAAAGCTGT 1003
|||||| |.|.||||||.|.||||||..|||||||||.||||||||.|
BL02187___yus 951 AGCCGC---TTTTATTACCGGGCAGTTTAAAACGTTTGGAAAAAAGCTCT 997
BSNT_04889 1004 CCTCATTCACTGAAAAAGCGTTTCGGGACGGCTGGATTGAGGCGGAAGAC 1053
||||.||..|||||||.|||.|..|.|||.|.|||.||||.||.||||||
BL02187___yus 998 CCTCCTTTGCTGAAAAGGCGCTCAGAGACAGATGGGTTGAAGCTGAAGAC 1047
BSNT_04889 1054 AGGAGCGGAAAAAGAGTC--GGCGGCTTTTGCACCAGTTTTCCTGACAGC 1101
|||.|.|||||| .||| ||||||||||||.|||.|||||||||||||
BL02187___yus 1048 AGGGGAGGAAAA--CGTCCGGGCGGCTTTTGCGCCAATTTTCCTGACAGC 1095
BSNT_04889 1102 GGGGAATCCCGGATTTTCATGACATTTTCGGGCAGCGCCTCAAATGTCTC 1151
||||||||..|.||.||.|||||||||.|.||.|||...|||||.||.||
BL02187___yus 1096 GGGGAATCAAGAATATTTATGACATTTGCAGGAAGCCAGTCAAACGTTTC 1145
BSNT_04889 1152 TACTCTT-GCGCATGAACTCGGGCACGCGTTCCATCAGGAAGCAATGCTC 1200
.|| ||| ||||||||.||.||.||.||.||.|||||||||.|.|||||.
BL02187___yus 1146 CAC-CTTGGCGCATGAGCTTGGCCATGCCTTTCATCAGGAATCCATGCTG 1194
BSNT_04889 1201 GACGTCAGGCCGTTAAACCGCTCCTACGCCATGAATGTTGCAGAAACAGC 1250
||||||||||||.|.|||.|..|.||.||.||||||||.||.|||||.||
BL02187___yus 1195 GACGTCAGGCCGCTGAACAGGGCGTATGCGATGAATGTGGCGGAAACGGC 1244
BSNT_04889 1251 TTCAACGTTTGCAGAGATGATAGTCGCGGACGCGACTGTCCAGCAGGCCG 1300
.||.||.||||||||.|||||.||.||.||.|||.|..|..|.||.||||
BL02187___yus 1245 GTCCACCTTTGCAGAAATGATCGTGGCCGATGCGGCGTTAAAACAAGCCG 1294
BSNT_04889 1301 ----AGACGAGGGAAGAGAAGCTTGTTCTTCTGGAGGATAAAGTGCAAAG 1346
|||| |||||.||..|.||.||||||||.|||||.||.||..|
BL02187___yus 1295 GTTCAGAC----GAAGAAAAAATCGTCCTTCTGGAAGATAAGGTTCAGCG 1340
BSNT_04889 1347 AAGTGTTGCGTTCTTCATGAACATTCACGCAAGATTTCTATTCGAAACGA 1396
.||.||.||.||.||.|||||||||||||||||.||.|||||.|||||..
BL02187___yus 1341 GAGCGTCGCCTTTTTTATGAACATTCACGCAAGGTTCCTATTTGAAACCC 1390
BSNT_04889 1397 GATTCTACGAGGAACGAAAGCGGGGAGTGGTACCGGCCAGCCGCTTGAAT 1446
|.||||||||.||||||||....||.||.|||.|.|||.|..|..||||.
BL02187___yus 1391 GCTTCTACGATGAACGAAAAAACGGCGTCGTATCCGCCGGAAGGCTGAAC 1440
BSNT_04889 1447 GAGCTGATGGAAGAGGCACAAAGAGAGGCATACTGCAATGCGTTAGAAGA 1496
||.|||||||||||.||.||.|.|||.||.|..|||..||||.|.|..||
BL02187___yus 1441 GAACTGATGGAAGAAGCTCAGAAAGAAGCGTTTTGCGGTGCGCTTGGCGA 1490
BSNT_04889 1497 ATATCATCCGCTTTTTTGGGCATCAAAACTTCACTTTCACATCACGAGGG 1546
.|||||||||..|||||||||||||||.|||||.|||.|.||.|||...|
BL02187___yus 1491 GTATCATCCGTATTTTTGGGCATCAAAGCTTCATTTTTATATTACGTCTG 1540
BSNT_04889 1547 TGCCGTTTTACAATTTCCCTTATACATTCGGCTACCTATTTTCTCTTGGC 1596
|.||||||||||||||.||||||||.|||||||||.|.|||||.||||||
BL02187___yus 1541 TTCCGTTTTACAATTTTCCTTATACGTTCGGCTACTTGTTTTCGCTTGGC 1590
BSNT_04889 1597 ATTTACGCGCTGGCGCTTGAAGAAAAA----AATGCATTTGAAGAGAAGT 1642
||||||||||..||||| ||||.| ...|||||||||||.||.|
BL02187___yus 1591 ATTTACGCGCAAGCGCT----GAAAGAGGGTGCGGCATTTGAAGAAAAAT 1636
BSNT_04889 1643 ATATGGCGCTATTGCGCGATACTGCTTCTATGACAGTGGAGGATTTGGCG 1692
||||.||.||.||....|||||.||.||.|||.|.||.||.||..||||.
BL02187___yus 1637 ATATTGCTCTCTTAAAAGATACAGCCTCCATGTCTGTTGAAGAACTGGCC 1686
BSNT_04889 1693 ATGAAGCATTTGGGCGCTGACATCACGAAGCGTGATTTTTGGGAGAATGC 1742
|||||||||.|.|||||.||..|.||||||||.|||||.|||||....||
BL02187___yus 1687 ATGAAGCATCTCGGCGCCGATCTGACGAAGCGGGATTTCTGGGAAGCGGC 1736
BSNT_04889 1743 CATCAAGCTGGCTGTGCGTGACGCCGAAACCTTTTT-GCAAATGACCGAA 1791
|||..|||.||||||.||.||.||.|||.|.||||| || .|||||..||
BL02187___yus 1737 CATTCAGCCGGCTGTCCGAGATGCAGAAGCATTTTTAGC-GATGACATAA 1785
BSNT_04889 1792 TCTTAA 1797
BL02187___yus 1785 ------ 1785
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