Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04884 and BL02181

See Amino acid alignment / Visit BSNT_04884 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:05
# Commandline: needle
#    -asequence dna-align/BSNT_04884.1.5803.seq
#    -bsequence dna-align/BL02181___yusU.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04884-BL02181___yusU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04884-BL02181___yusU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04884
# 2: BL02181___yusU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 257
# Identity:     184/257 (71.6%)
# Similarity:   184/257 (71.6%)
# Gaps:          16/257 ( 6.2%)
# Score: 617.5
# 
#
#=======================================

BSNT_04884         1 ATGGAACAAAAACTTCA-GGAGCAGCTTGATGGATTGCTAGAGAAGTATA     49
                     .|||   |||||| ||| |||||||||.||.|||.||.|.|||||.||||
BL02181___yus      1 GTGG---AAAAAC-TCAGGGAGCAGCTGGACGGACTGGTCGAGAAATATA     46

BSNT_04884        50 CTGAGCTTCTGCTTGGTGAAACAAACGATGAGCTAAAAGAAGAAGTGAAG     99
                     |.||.||.||..|.||.|||||..||||.||.||.||||||.|.||||||
BL02181___yus     47 CGGAACTGCTTTTGGGCGAAACGGACGAAGAACTGAAAGAACAGGTGAAG     96

BSNT_04884       100 CAATGGATTTTGTACACGCATATAGCCAAGAGCATGCCTCCGCTCGCTAA    149
                     ...|||||..|.||||..|||||.|||||.||||||||.||.|||||.||
BL02181___yus     97 ATGTGGATCATCTACAGCCATATCGCCAAAAGCATGCCGCCCCTCGCCAA    146

BSNT_04884       150 GCATTGGAATGCGA-CATACCCCGACGCAAAGCAGGGCATTAAAGAGATC    198
                     |||||||||.| || |.||.||.||.||.||||||||.||.|||||..|.
BL02181___yus    147 GCATTGGAACG-GAGCTTATCCGGATGCGAAGCAGGGGATAAAAGAAGTA    195

BSNT_04884       199 ATTCAGCATATTAAGGAATTAAATGAAGCGCATCG-------AA--ACAA    239
                     ||.|..||.|||||.|||...|||||||||||.||       ||  |.||
BL02181___yus    196 ATCCGCCAGATTAAAGAACGTAATGAAGCGCACCGGGCGGCTAATCAGAA    245

BSNT_04884       240 ACAATAG    246
                     |.||||.
BL02181___yus    246 AAAATAA    252


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