Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04843 and BL02164
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:02
# Commandline: needle
# -asequence dna-align/BSNT_04843___csd.1.5803.seq
# -bsequence dna-align/BL02164___csd.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04843___csd-BL02164___csd.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04843___csd-BL02164___csd.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04843___csd
# 2: BL02164___csd
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1234
# Identity: 976/1234 (79.1%)
# Similarity: 976/1234 (79.1%)
# Gaps: 26/1234 ( 2.1%)
# Score: 3806.0
#
#
#=======================================
BSNT_04843___ 1 ATGAATATCACAGATATTCGTGAGCAGTTCCCGATCCTTCA-TCAGCAAG 49
||||||...|.|||||||||.||.|||||.|||||.| ||| .||.||.|
BL02164___csd 1 ATGAATGCTAAAGATATTCGCGAACAGTTTCCGATTC-TCAGCCAACAGG 49
BSNT_04843___ 50 TGAACGGACATGATCTCGTTTATCTCGACAGCGCGGCGACTTCCCAGAAG 99
|.||||||||.||||||||||||.|.|||||||||||.||.||.||.|||
BL02164___csd 50 TCAACGGACACGATCTCGTTTATTTGGACAGCGCGGCCACCTCGCAAAAG 99
BSNT_04843___ 100 CCGCGTGCTGTCATTGAAACACTGGATAAGTATTATAACCAATACAATTC 149
|||||.|..||||||||.||.||.|||.|||||||.|||...||||||||
BL02164___csd 100 CCGCGCGTCGTCATTGAGACGCTTGATGAGTATTACAACTCTTACAATTC 149
BSNT_04843___ 150 CAATGTTCACCGGGGCGTCCATACACTTGGAACCAGAGCGACAGATGGTT 199
||||||.||.||.||||||||||||.|.|||||.|.|||.||.|||||.|
BL02164___csd 150 CAATGTCCATCGCGGCGTCCATACATTAGGAACAAAAGCAACGGATGGAT 199
BSNT_04843___ 200 ATGAAGGAGCGCGTGAAAAAGTCCGCAAGTTTATTAACGCGAAGTCAATG 249
||||||||||.|||||.||.|||.|.||||||||.||||||||.||.|||
BL02164___csd 200 ATGAAGGAGCACGTGAGAAGGTCAGGAAGTTTATAAACGCGAAATCGATG 249
BSNT_04843___ 250 GCTGAGATTATTTTCACAAAAGGCACGACCACATCACTGAATATGGTGGC 299
...||.|||||||||||||..||.|||||.||..|.|||||.|.|||.||
BL02164___csd 250 CAGGAAATTATTTTCACAAGGGGTACGACAACGGCCCTGAACACGGTTGC 299
BSNT_04843___ 300 GTTAAGCTATGCGCGCGCCAACCTGAAACCTGGTGATGAAGTGGTCAT-- 347
|.|.||||||||.|||||.|||||.||.||.|||||||||.|.|||||
BL02164___csd 300 GCTCAGCTATGCCCGCGCAAACCTTAAGCCCGGTGATGAAATCGTCATTA 349
BSNT_04843___ 348 CACCTACATGGAGCATCATGCGAATATCATTCCGTGGCAGCAGGCTGTAA 397
|||| .||||||||.|||||||||||.||||||||||||||||||||.|
BL02164___csd 350 CACC--GATGGAGCACCATGCGAATATTATTCCGTGGCAGCAGGCTGTCA 397
BSNT_04843___ 398 AAGCAACTGGCGCCACATTAAAATATATTCCGCTGCAGGAAGACGGAACG 447
|||||||.||||||||..|.||.||.||||||||.|||||||||||.||.
BL02164___csd 398 AAGCAACCGGCGCCACGCTGAAGTACATTCCGCTTCAGGAAGACGGCACC 447
BSNT_04843___ 448 ATTTCTTTAGAAGACGTCAGAGAAACGGTCAC--AAGCAACACAAAAATT 495
|||||.||.||.||.|||||.||||||||.|| || ||.||||||||.
BL02164___csd 448 ATTTCCTTGGACGATGTCAGGGAAACGGTGACGGAA--AATACAAAAATC 495
BSNT_04843___ 496 GT---TGCGGTGTCTCATGTATCTAATGTTCTCGGCACGGTCAACCCGAT 542
|| |||.| |.|||||.||.||.||||||||.|||.||||||||||
BL02164___csd 496 GTCTCTGCAG---CGCATGTTTCAAACGTTCTCGGTACGATCAACCCGAT 542
BSNT_04843___ 543 TAAAGAAATGGCGAAAATCGCTCATGACAATGGGGCTGTCATTGTGGTGG 592
|||.||||||||.||||||||.||.||..|.||.||.|||||.||.||.|
BL02164___csd 543 TAAGGAAATGGCCAAAATCGCCCACGAACACGGCGCGGTCATGGTCGTAG 592
BSNT_04843___ 593 ACGGTGCACAAAGCACGCCTCACATGAAAATTGACGTGCAGGATCTCGAT 642
|||||||.|||||||||||.|||||||||||||||||.||||||.|.||.
BL02164___csd 593 ACGGTGCGCAAAGCACGCCGCACATGAAAATTGACGTCCAGGATTTGGAC 642
BSNT_04843___ 643 TGCGACTTCTTTGCGCTTTCTTCCCATAAAATGTGCGGACCTACTGGCGT 692
|||||.||||.|.||.||||..||||.||||||||.||.||.||.||..|
BL02164___csd 643 TGCGATTTCTATACGTTTTCAGCCCACAAAATGTGTGGTCCGACCGGAAT 692
BSNT_04843___ 693 TGGTGTGCTGTACGGAAAGAAAGCCCTGCTGGAAAATATGGAGCCTGCCG 742
.||.||..||||.|||||.|||||..||||.|||||.|||||.|||||.|
BL02164___csd 693 CGGGGTATTGTATGGAAAAAAAGCATTGCTTGAAAACATGGAACCTGCAG 742
BSNT_04843___ 743 AATTCGGCGGTGAAATGATCGACTTTGTCGGGCTTTATGAATCAACTTGG 792
||||||||||.|||||||||||.||||||||.|||||.|||||.||||||
BL02164___csd 743 AATTCGGCGGAGAAATGATCGATTTTGTCGGTCTTTACGAATCGACTTGG 792
BSNT_04843___ 793 AAAGAGCTTCCGTGGAAATTCGAAGCGGGTACGCCGATTATTGCAGGAGC 842
||.|||||.||.||||||||||||||.||.||.|||||.|||||.||.||
BL02164___csd 793 AAGGAGCTGCCTTGGAAATTCGAAGCCGGCACACCGATCATTGCCGGCGC 842
BSNT_04843___ 843 AATCGGTCTCGGTGCCGCCATTGATTTTCTCGAAGCAATCGGTCTTGATG 892
.|||||..|.||.||.||.|||||.||.||.||||..|||||.|||||||
BL02164___csd 843 GATCGGATTGGGAGCGGCGATTGACTTCCTTGAAGACATCGGACTTGATG 892
BSNT_04843___ 893 AGAT-TTCCCGCCATGAGCACAAGCTT-GCAGCTTATGCGCTTGAACGCT 940
|.|| ||..|| |||||.||| .|.|| ||.||.||.|||||.||.||||
BL02164___csd 893 AAATATTAGCG-CATGAACAC-CGTTTGGCGGCATACGCGCTGGAGCGCT 940
BSNT_04843___ 941 TCCGCCAGCTTGACGGCGTAACGGTT---TACGGGCCGGAAGAGCGTGCC 987
|.....|||||||.|||| |.||| ||.||.||||..||.|||||.
BL02164___csd 941 TTAAAGAGCTTGAAGGCG---CTGTTGTCTATGGTCCGGCCGAACGTGCA 987
BSNT_04843___ 988 GGGCTTGTCACATTTAACCTTGATGATGTTCATCCGCACGATGTGGCGAC 1037
||.||.||.||.||.||||||||.||.||||||||||||||||||||.||
BL02164___csd 988 GGACTCGTGACGTTCAACCTTGAAGACGTTCATCCGCACGATGTGGCAAC 1037
BSNT_04843___ 1038 TGTGCTTGATGCGGAGGGAATCGCAGTCAGAGCCGGCCACCATTGTGCGC 1087
.|||||.|||||.||.||..||||.||||||||||||||.||.||.||||
BL02164___csd 1038 CGTGCTGGATGCAGAAGGGGTCGCCGTCAGAGCCGGCCATCACTGCGCGC 1087
BSNT_04843___ 1088 AGCCGCTGATGAAATGGCTGGATGTAACTGCTACTGCAAGAGCAAGCTTT 1137
||||..|.||||||||||||.|.||..|.||.|||||||||||.||||||
BL02164___csd 1088 AGCCTTTAATGAAATGGCTGAACGTCTCCGCCACTGCAAGAGCGAGCTTT 1137
BSNT_04843___ 1138 TATCTGTATAATACAGAGGAAGAGATTGATAAGCTTGTGGAAGCTCTTCA 1187
||||||||||||||.||.|||||.||.||.||.||..|.|||||||||||
BL02164___csd 1138 TATCTGTATAATACGGAAGAAGACATCGACAAACTGATTGAAGCTCTTCA 1187
BSNT_04843___ 1188 AAAGACAAAGGAGTATTTTACAAATGTCTTTTAA 1221
.|||||||||||||||||.|||||||||||||||
BL02164___csd 1188 GAAGACAAAGGAGTATTTCACAAATGTCTTTTAA 1221
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