Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01577 and BL02161
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:02
# Commandline: needle
# -asequence dna-align/BSNT_01577___rapI.1.5803.seq
# -bsequence dna-align/BL02161.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01577___rapI-BL02161.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01577___rapI-BL02161.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01577___rapI
# 2: BL02161
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1323
# Identity: 726/1323 (54.9%)
# Similarity: 726/1323 (54.9%)
# Gaps: 351/1323 (26.5%)
# Score: 1681.0
#
#
#=======================================
BSNT_01577___ 1 TTGCGAG-GTGTTTTAGATAAAGATAAAATTCCATATGATGTAGTT---A 46
|.||| ||| ||.|||||||||.|.||| |
BL02161 1 --GTGAGCGTG-----------------ATACCATATGATTTGGTTGCGA 31
BSNT_01577___ 47 CAAAAA--AATTAAACGAATGG--TACACCCATATAAAA-AATGATGCTC 91
|.|||| |||| ..||| ||||.||.||.|||| ||
BL02161 32 CGAAAATGAATT-----TTTGGTATACAGCCTTAAAAAACAA-------- 68
BSNT_01577___ 92 TTG---AG--AAAGCTAAACAAATAAAAAAAGAAGTTGAAGAAGATCTAA 136
||| || ||.|||.|..|.|..||.||||||||||||..|||..||.
BL02161 69 TTGGACAGGCAAGGCTGAGGATACTAAGAAAGAAGTTGAACGAGAATTAG 118
BSNT_01577___ 137 AAAAAATGGAAGAAAGTAAAGATGCTTTACTATATTATCAA-TTACTTGA 185
||.||||||||.|||.|.|.||||...|..|.||||| ||| |||||...
BL02161 119 AACAAATGGAACAAAATCAGGATGTGATTGTCTATTA-CAACTTACTGCT 167
BSNT_01577___ 186 ATTCCGCCACGAGTTATTGGTCA-----ATTACATGAATTCAGAAAAGAC 230
.|||||.|| ||.|..||| ||||.|||.|||| .|||..|
BL02161 168 CTTCCGGCA-----TAATCTTCAACTTGATTATATGTATTC--TAAACCC 210
BSNT_01577___ 231 AG---AAGAATTGAAA-AGTTCATATCTGGCTATG-----AAAAAG-TTG 270
.| | ||||.||| || ||.| |.|| ||| |||||| ||.
BL02161 211 GGTGTA--AATTTAAATAG-TCGT-TTTG---ATGAGTTCAAAAAGATTC 253
BSNT_01577___ 271 GAGGACCAGGGCAATGTTACT----GGAATGTTGGAATATTATTTTCATT 316
| .||.|||...||| || |||||||||||.|||||||.|||||
BL02161 254 G-CGATCAGAATAAT----CTGGAAGGAATGTTGGATTATTATTATCATT 298
BSNT_01577___ 317 TCTTTATGGGGATGTATGAATTCAGAAGAAAAAAACTAA---CTGCGGCA 363
|.||....||.||||||.|.||||||..||||.||.||| .||||
BL02161 299 TTTTCGCTGGAATGTATCATTTCAGACAAAAAGAATTAATCCTTGCG--- 345
BSNT_01577___ 364 ATAACTTCATATAGAAAAGC--AGAAGCTAAA-----------TTAAGTG 400
.|.|.||..|||||..|.|| |||| ||| ||.|.||
BL02161 346 CTGAATTTTTATAGGGATGCCGAGAA---AAAACTCGATTCTTTTGATTG 392
BSNT_01577___ 401 AAGTAGATGATGAGATTGAAAAAGCAGAATTCTTTTTTAAAGTATCATAT 450
||||||..|.|||||.||.|||||.|.|||.||.|.|||..|.
BL02161 393 -------TGATGAACTGGAAAAGGCTGAATTTTATTTCAAGGCATCTGAA 435
BSNT_01577___ 451 GTTTATTACTATATGAAGCAAA-CATACTTTTCGCTTAACTATGCCTATA 499
||.||||||.|||||||.|||| ||| |||||||.|.||.|||||...|.
BL02161 436 GTGTATTACCATATGAAACAAACCAT-CTTTTCGATGAATTATGCAAGTC 484
BSNT_01577___ 500 GAGCTCTTGAAATATATC-AAAGGTATGATGATTACTTTATACAGA---- 544
|.||...|.|..||| || |||.|||||||..||||..| ||
BL02161 485 GTGCGTATAACTTAT-TCAAAAAGTATGATACTTACGGT-----GAGCGT 528
BSNT_01577___ 545 -GATTAAGATGTCAATTTGTATTAGGTGGAAACTTTATTG------ACTC 587
||.||..|.||||.||| .|||||| |||.
BL02161 529 CGAGTACAAAGTCAGTTT---------------ATTATTGCAGGTAACTG 563
BSNT_01577___ 588 CCTAGA--ATAT-------GAAAAGGCATTGGATACATTTATGGAAGCGT 628
.||||| |||| |||||.||..|..||| ||||
BL02161 564 GCTAGATCATATGTATCCCGAAAAAGCTCTACATA-ATTT---------- 602
BSNT_01577___ 629 TAAAAATAGCTGAAGAAATTAA------------------AATTGATTAT 660
||||| ||||..|||| ||||..|.||
BL02161 603 ---AAATA----AAGAGCTTAAAGAGTCAGAGACACAAGGAATTCTTCAT 645
BSNT_01577___ 661 -TTAATTGGG---ATGGCACACATCAACATAGGTATTTGCTTTGATGAGT 706
||| |||| || ||||..|.||.||.||.||.||||...||.|.|
BL02161 646 CTTA--TGGGTTCAT--CACATTTAAATATCGGAATATGCTACAATAAAT 691
BSNT_01577___ 707 TAAAAGA---------------CTACA------AAAGTGCATCAAGTCAT 735
|..|||| ||||| ||||.|| |
BL02161 692 TGGAAGATGTCGATAAAGCAACCTACAATTTTCAAAGAGC---------T 732
BSNT_01577___ 736 CTAAAAAAGGCGTTAGATTTGTTAGAGGTTAGCGATCACAGTTTTGTTG- 784
||.|| .|.|||.| .|||||..| |.||.|||||| |||
BL02161 733 CTGAA----CCTTTATA-----AAGAGGAGA---AGCATAGTTTT-TTGC 769
BSNT_01577___ 785 CGAAAACTCTTTTTATTTTAA-----CACATGTAAAGATCAAGCAAGG-- 827
|.||||| .||| ||.|| |||||||.|.|...||||||||
BL02161 770 CAAAAAC----ATTA-TTCAACCTCGCACATGTCAGGGCAAAGCAAGGGA 814
BSNT_01577___ 828 ---TGACAAAGAATCAGCTGGTGA-CTATTTTCAAAAAGGACATGAGTTT 873
||.||| .|.|||.||| ||||..| |..||||..|.|||||.
BL02161 815 AGTTGTCAA-----TAACTGATGACCTATACT-ATGAAGGCAAAGAGTTG 858
BSNT_01577___ 874 G-TAAATAAAACAAATGATGCTGAATATA---ATGCT----AAATTTAAA 915
| |.||.|.||||| ||||.|| ||||| ||.|||.|.
BL02161 859 GCTGAAAAGAACAA--------GAATTTAGATATGCTTGCAAAGTTTGAT 900
BSNT_01577___ 916 ATATTAGAAGGACTTTATTTTTCAAATGGTGAATATGAAT-TGATTAGTG 964
.||.||.||||.||||||.|||||..|| ||.||.|| ||.||.|.|
BL02161 901 TTAATAAAAGGGCTTTATCTTTCATTTG----ATCTGGATATGGTTCGCG 946
BSNT_01577___ 965 AGGCTTTTGCATATTTTGATTC--AATGAAA---ATGTATGCAGATTTAG 1009
|..|.|| ||..||| ||| ||..||| |.|||||||||..|.|
BL02161 947 AATCGTT--CAAGTTT---TTCGAAAGTAAAGGCAAGTATGCAGACATGG 991
BSNT_01577___ 1010 AGAACTATGCTGTTGAAGTGGCCCAATTTTTTCATCGGAAACAGG---AT 1056
||.|.||.|.|.||..||.|||..||.|.||..| ||||.|.| |.
BL02161 992 AGGAATACGGTCTTATAGCGGCTGAACTATTAGA---GAAAAAAGAAAAA 1038
BSNT_01577___ 1057 TTTCAACGCTCAAGTGAATATTATA--TGATGAGTGTTGAAGCAAGAA-A 1103
.|||.| |.|..||||.| |||.|| .|||.|..|||.|.||.|||| |
BL02161 1039 ATTCGA-GATGCAGTGGA-ATTCTACCGGATAACAGTTAATGCGAGAAGA 1086
BSNT_01577___ 1104 CAAAATTAAAAAAGGAGAGATTAT-TA-ATG-AAACTCAGTCGGGTCATA 1150
||||.| .|||||||.|.||.| || ||| |||||.|
BL02161 1087 CAAATT---CAAAGGAGTGCTTTTCTACATGTAAACTAA----------- 1122
BSNT_01577___ 1151 TTGGCAGTAGCGGTGTTAACTAG 1173
BL02161 1122 ----------------------- 1122
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