Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04818 and BL02153
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:01
# Commandline: needle
# -asequence dna-align/BSNT_04818___yurH.1.5803.seq
# -bsequence dna-align/BL02153___pucF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04818___yurH-BL02153___pucF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04818___yurH-BL02153___pucF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04818___yurH
# 2: BL02153___pucF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1412
# Identity: 811/1412 (57.4%)
# Similarity: 811/1412 (57.4%)
# Gaps: 331/1412 (23.4%)
# Score: 1947.0
#
#
#=======================================
BSNT_04818___ 1 ATGGAAAAGCAGAAGCTTTCAGTAA--------AAA--ACAGC------- 33
||| |.||...|..|||| ||| ||| |||||
BL02153___puc 1 ATG----ACCATTGGTATTCA-TAAGACCGGAGAAAGTACAGCCCGCAAT 45
BSNT_04818___ 34 ATC----ACA-GATTATATTGAATGGC-TCGCCCAATACGGTGCGTCTGC 77
||| ||| |||.| ||||..|||| || ||.|||| |...||
BL02153___puc 46 ATCGAAGACATGATCA-ATTGGCTGGCATC-----ATTCGGT--GAAAGC 87
BSNT_04818___ 78 G--GATGGCGGCGTAACGAGGCTTTTATACACAAAAGAGTGGATGGACGC 125
| ||.||.||.||.||.||||||.|.||..||||...||||.|...|||
BL02153___puc 88 GGAGAAGGAGGGGTGACAAGGCTTCTCTATTCAAAGCCGTGGCTCAGCGC 137
BSNT_04818___ 126 ACAGCTTGCTGTGAAAACGGAAATGTCTG-----CTTTCGGGCTTGAAAC 170
.||||...|..|||| |||||.| .|| || ||| |||
BL02153___puc 138 CCAGCAGTCGTTGAA---GGAAAAG-ATGGAGGACT---GGG---GAA-- 175
BSNT_04818___ 171 AAGA-------TTCGACGATGTCGGCAATGTGTTTGGAAGGCTTTCGGGC 213
.||| |||||.||||.|||.|||.|||||||.||..|....||.
BL02153___puc 176 TAGAGCCGTACTTCGATGATGCCGGAAATCTGTTTGGGAGAATAGAAGGT 225
BSNT_04818___ 214 ACCCAGTCTCCGGATG-AAGTCATTGTAACCGGTTCACATATCGATACTG 262
||..|| ..|||.|.| |||..||..|.|||||||||||.||.|||||.|
BL02153___puc 226 ACAGAG-AACCGTACGAAAGCGATCTTGACCGGTTCACACATTGATACGG 274
BSNT_04818___ 263 TCATCAATGGGGGAAAATACGACGGCGCCTATGGTGTTCTGGCG-GCGAT 311
|||||||.||.||.||||.||||||.||.||.||..||.|.||| ||
BL02153___puc 275 TCATCAACGGAGGGAAATTCGACGGAGCGTACGGGATTTTAGCGAGC--- 321
BSNT_04818___ 312 GCT------TGCGATAAAGCGGCTCAAAGAGACATATGG-AGCGCCGAAA 354
|| |||.|.|.|.|..|| .||.||.||.|| || |||||||
BL02153___puc 322 -CTTTTGTCTGCCAAACACCTTCT---GGACACGTACGGCAG-GCCGAAA 366
BSNT_04818___ 355 AAAACACTCGAAGCGGTATCTTTATGTGAGGAGGAGGGCAGCCGTTTTCC 404
|...||.||||||..||.|||.|.||.|||||.|||||.||||||||.||
BL02153___puc 367 ACGTCAATCGAAGTCGTGTCTCTGTGCGAGGAAGAGGGAAGCCGTTTCCC 416
BSNT_04818___ 405 AATGACCTATTGGGGATCAGGGAATTTAACGGG--TGTTT---TTTCATT 449
..||||.|.|||||||||.|||||||||||||| ||||| |.|||..
BL02153___puc 417 TTTGACTTTTTGGGGATCGGGGAATTTAACGGGCTTGTTTGACTGTCAAA 466
BSNT_04818___ 450 A----CAGGATGGAGCA-GAGCCAAGAGACGAATCAGGAGTCTCGCTGCA 494
| |.||.| |.||| ||.| |.||| |||||.|||.|..|
BL02153___puc 467 AGACGCCGGCT-GTGCACGATC---GGGAC------GGAGTATCGATTGA 506
BSNT_04818___ 495 ACATGCGATGCAAGAGAACGGTTTTGGCAAAGGTGTGTTTCAGGCAGCAT 544
.||.||||||.||||...||||||.||.|||.| |.|.|.|||||..|
BL02153___puc 507 GCAGGCGATGAAAGATTGCGGTTTCGGAAAACG-GCGGTACAGGCGCC-- 553
BSNT_04818___ 545 ATCGGACA-----GATAT-CAGCGCTTTTGTTGAGCTCCATATTGAACAG 588
||..|| |||.| .||.|| |||.|.|||||.||||||||||||
BL02153___puc 554 --CGTTCAGGCGTGATGTGAAGTGC-TTTATCGAGCTTCATATTGAACAG 600
BSNT_04818___ 589 GGACAGA-CATTGGAAATGTCAGGA---CGGGACC------TCGGGATTG 628
|| || |||| ..|.|||| ||| || ||||.||||
BL02153___puc 601 GG---GAGCATT-----CTTGAGGAGAGCGG--CCGTCAAATCGGCATTG 640
BSNT_04818___ 629 TGACAAGCATTGCGGGGCAGAGGCGCTATCTCGTCACGCTGGAGGGGGAA 678
|.||...|||.|..||.||.||.||.|.|...||.|.|.|..||||.|||
BL02153___puc 641 TCACGGACATCGTCGGACAAAGACGGTTTACGGTTATGGTCAAGGGAGAA 690
BSNT_04818___ 679 TGCAATCATGCGGGAACCACCTCCATGAAATGGCGC----AAGGACCCGC 724
.||||.|||||.||.||.||..|.||||| ||| ||.||..||
BL02153___puc 691 AGCAACCATGCCGGGACGACGCCGATGAA----CGCCAGAAAAGATGCG- 735
BSNT_04818___ 725 TCGCAGCCAGCAGCCGTAT---CATT---CATGAGCTGTTGCTG-CGGTC 767
|..|||||.| |||| |||...||.|| || ||..|
BL02153___puc 736 ---------GTGGCCGTCTCGGCATTGTGCATTTCCTATT--TGACGAAC 774
BSNT_04818___ 768 GGAGG----AGCTGCCGGATGAGCTCCG--TCTGACATGCGGAAAAATAA 811
.||| |||||| |.| |||| |.|.||| || ||
BL02153___puc 775 -AAGGCTAAAGCTGC----TTA--TCCGCTTTTAACA-GC--------AA 808
BSNT_04818___ 812 CG---------------GCAGAGCCCAATGTAGCC-AATGTCATACCGGG 845
|| |||.||||.||||| ||| |||||||||.|.||
BL02153___puc 809 CGGTCGGGAGGATTGAAGCAAAGCCGAATGT-GCCGAATGTCATATCAGG 857
BSNT_04818___ 846 CCGCGTCCAG--------TTTTCAATCGATATTCGCCATCAGCATCA-GC 886
|| |||||..|.|||.|.||||||||.|||.| ||
BL02153___puc 858 --------AGAAGCTGTTTTTTCTCTTGATCTCCGCCATCATCATGATGC 899
BSNT_04818___ 887 ATGTGCTGGAGCAGTTTCATCAAGACATGGTTGCTTTGATCA-ACGGCAT 935
.|||.||||.|.||.|....|.||.||..||||||...||| |..||
BL02153___puc 900 -GGTGTTGGACCGGTATTGCGACGATATTTTTGCTTATTTCACAGAGC-- 946
BSNT_04818___ 936 TTGCCTACAAAAAGGAATTCGCGCCGT---GAT---TGATGAATATATG- 978
|.|||..| .||.|||| ||| ||| .|.||||.|.|.|
BL02153___puc 947 TGGCCGGC-GAATGGAA-------CGTTCAGATCACAGTTGAACAGACGA 988
BSNT_04818___ 979 CGGATAG---AGCCTGTGCCGATGGACGAAAGGCTGAAGGCTGCGGCTTT 1025
||||| | ||||||||..||||||| |||..||
BL02153___puc 989 CGGAT-GCGAAGCCTGTGAGGATGGAC----------------CGGGATT 1021
BSNT_04818___ 1026 TGAAACAGCATTAGAAAACGG------------CTTCA-----GCTGTGA 1058
|||..||.| |...|||||.| |||.| .||.|.|
BL02153___puc 1022 TGATTCAAC-TCTCAAAACAGTCGGCCGAGGATCTTGACGTATCCTATCA 1070
BSNT_04818___ 1059 GGAAATGGTGAGCGGAGCAGGGCATGACGCGCAAATGATCGGAAGGCGCT 1108
|||.|||||.|||||.||.|||||.||.||.||..|..||||
BL02153___puc 1071 GGAGATGGTCAGCGGGGCGGGGCACGATGCCCAGGTTTTCGG-------- 1112
BSNT_04818___ 1109 ATCCTGC-TTG---------TATGCTGTTTGTGCCGAGCCG--AGGCGGC 1146
||.|| ||| ..|||||||.||.|||||||| || |||
BL02153___puc 1113 --CCCGCATTGCCCGACGTCACTGCTGTTCGTTCCGAGCCGGAAG--GGC 1158
BSNT_04818___ 1147 GTCAGCCACTCACCGAAGGAATATACGTCAGCCAGACA------GCTTGA 1190
.|||||||.||.|||.|.|||| .|||| |||
BL02153___puc 1159 ATCAGCCATTCGCCGGAAGAAT-----------GGACAAAACCGGCT--- 1194
BSNT_04818___ 1191 GAT--------CGGCGTCCGCGCAC-TGACTGATTTATTATACAAACTGG 1231
||| |||||| .|.||.| |||||.||.|||||||||..||||
BL02153___puc 1195 GATCTTGCAGCCGGCGT-TGAGCTCTTGACTCATGTATTATACAGGCTGG 1243
BSNT_04818___ 1232 CTTACTGA---- 1239
|.|| |||
BL02153___puc 1244 CATA-TGAATGA 1254
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