Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04817 and BL02152

See Amino acid alignment / Visit BSNT_04817 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:01
# Commandline: needle
#    -asequence dna-align/BSNT_04817___yurG.1.5803.seq
#    -bsequence dna-align/BL02152___pucG.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04817___yurG-BL02152___pucG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04817___yurG-BL02152___pucG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04817___yurG
# 2: BL02152___pucG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1326
# Identity:     869/1326 (65.5%)
# Similarity:   869/1326 (65.5%)
# Gaps:         174/1326 (13.1%)
# Score: 2655.0
# 
#
#=======================================

BSNT_04817___      1 GTGTCA---GGCAGAAGAGAATTATGCACCCCGTTAAGAACGATTATGAC     47
                     .||.||   ||| |||..||||     |..|||..|.|.||.||||||||
BL02152___puc      1 ATGACAATTGGC-GAAATGAAT-----ATTCCGAAACGGACAATTATGAC     44

BSNT_04817___     48 GCCAGGGCCTGTTGAGGTTGATCCGCGTGTATTAAGAGTAATGAG-----     92
                     .||.||.|||||.||||||.|||||         |||||..||||     
BL02152___puc     45 TCCCGGTCCTGTCGAGGTTCATCCG---------AGAGTGCTGAGGGCGC     85

BSNT_04817___     93 ----CACCCCGGTTGTCGGCCAATTTGATCCGGCGTTTACAGGTATTATG    138
                         |.|.||.||..|.||.||.||.|||||.||.|||||||..||.|||
BL02152___puc     86 TTTCCTCACCTGTACTGGGACAGTTCGATCCTGCATTTACAGACATGATG    135

BSNT_04817___    139 AATGAAACG--ATGGAGATGCTTCGGGAGCTGTTCCAAAC----AAAAAA    182
                     ||.|  |||  ||||.|.||||||||.||.|.||||.|||    ||.|||
BL02152___puc    136 AACG--ACGTCATGGCGCTGCTTCGGCAGATTTTCCGAACGACAAATAAA    183

BSNT_04817___    183 CCGCTGGGCATACCCGATTGACGGCACTTCACGGGCGGGAATTGAAGCAG    232
                         |||||||.||||||.|||||.||.||.|||||.||..|||||||.|
BL02152___puc    184 ----TGGGCATTCCCGATAGACGGGACATCGCGGGCCGGGCTTGAAGCCG    229

BSNT_04817___    233 TGCTGGCTAGTGTGATAGAGCCGGAAGATGATGTGCTCATTCCCATTTAC    282
                     |.||.||.|||.|.||..|.||||..||....||||||||||||||||.|
BL02152___puc    230 TCCTTGCCAGTCTCATCAAACCGGGGGACAGGGTGCTCATTCCCATTTTC    279

BSNT_04817___    283 GGCCGTTTCGGTTATTTGCTGACTGAAATCGCCGAGCGATATGGGGCAAA    332
                     ||.||.|||||.|||.||||..|.||.||...|||.||.||...|||..|
BL02152___puc    280 GGACGGTTCGGCTATCTGCTTGCCGAGATTTGCGAACGGTACCAGGCTGA    329

BSNT_04817___    333 TGTTCATATGCTTGAGTGCGAATGGGGA-ACGGTTTTTGACCCG---GAG    378
                     ||||.|||...|.||.|||...|||||| || ||||||||.|||   |||
BL02152___puc    330 TGTTTATACAATGGAATGCCCGTGGGGAGAC-GTTTTTGAACCGAAAGAG    378

BSNT_04817___    379 GACATCATACGGGAGATAAA--AAAAG--TGAAGCCGAAAATTGTGGCAA    424
                     |.|||| |.||      |||  |||.|  .|||.|||.|.|||||.||..
BL02152___puc    379 GTCATC-TCCG------AAATCAAACGGACGAAACCGGAGATTGTTGCGG    421

BSNT_04817___    425 TGGTGCATGGAGAAACATCGACAGGACGGATTCACCCGCTGAAAGCCATC    474
                     |.|||||.||.||.||||||||.|||.|.|||||.|||||..|||..||.
BL02152___puc    422 TTGTGCACGGCGAGACATCGACGGGATGCATTCAGCCGCTCGAAGAAATT    471

BSNT_04817___    475 GGCGAAGCCTGCCGCACCGAGGA--------TGCATTGTTTATCGTCGAT    516
                     |||...||||||||      |||        |||.||||.||  ||||||
BL02152___puc    472 GGCCGGGCCTGCCG------GGAGCTTGATGTGCTTTGTGTA--GTCGAT    513

BSNT_04817___    517 GCAGTCGCAACGATTGGGGGCTGCGAGGTTAAAGTCGATGAATGGAAGAT    566
                     ||.||.||.||.||.||.|||...||.||.||....|||||||||....|
BL02152___puc    514 GCGGTGGCTACAATCGGCGGCACGGATGTCAATACGGATGAATGGTGTCT    563

BSNT_04817___    567 TGACGCTGCCATCGGCGGAACGCAAAAGTGTTTGTCTGTGCCCTCAGGAA    616
                     ||||||.|.|.|||||||.||||||||||||||.||.||.||.|||||.|
BL02152___puc    564 TGACGCGGTCGTCGGCGGTACGCAAAAGTGTTTATCCGTTCCTTCAGGTA    613

BSNT_04817___    617 TGGCGCCGATTACATATAATGAG-CGGGT-----GGCGGACGTGATTGCA    660
                     ||||||||||.||||.||| .|| |||||     .|||  |.|.|.||.|
BL02152___puc    614 TGGCGCCGATCACATTTAA-CAGCCGGGTTGAAAAGCG--CATCAATGAA    660

BSNT_04817___    661 GCTCGCAAAAAGGTAGAACGCGGGATTGCGACACAAGCTGACAGTGAA--    708
                        .|.||||||||||||||.||.|||||.|||         ||.|||  
BL02152___puc    661 ---AGGAAAAAGGTAGAACGGGGCATTGCCACA---------AGAGAAGA    698

BSNT_04817___    709 ----GCGCTT---TCGGGAAATCG---GCCGATCACAAGCAACTACTTTG    748
                         |.||||   .|||||   ||   ||||||..|.|||||.||.||||
BL02152___puc    699 TATCGTGCTTGAAACGGGA---CGCTTGCCGATTTCCAGCAATTATTTTG    745

BSNT_04817___    749 ATTTGAGCCAGCTTGA-GGATTATTGGAGCGAAAGACGGCTCAATCATCA    797
                     |..|..||..|| ||| |||||||||||||...||.||.||.||||||||
BL02152___puc    746 ACCTCGGCATGC-TGATGGATTATTGGAGCCCGAGGCGCCTTAATCATCA    794

BSNT_04817___    798 TACAGAAGCGACGACGATGCTGTACGCCTTACGTGAGGGAGTCAGACTGG    847
                     ||||||||||||..||||||||||||.|||.||.||.||||...|..|.|
BL02152___puc    795 TACAGAAGCGACTTCGATGCTGTACGGCTTGCGCGAAGGAGCGCGGGTCG    844

BSNT_04817___    848 TGCTTGAAGAAGGTCTTGAGGCGCGTTTC----GAGCGGCATCGGCACCA    893
                     |.|||||.|||||.||....|.|||.|||    ||    ||.||||.|||
BL02152___puc    845 TTCTTGAGGAAGGGCTCCGCGAGCGATTCTCAAGA----CACCGGCTCCA    890

BSNT_04817___    894 TGAAGCCGCATTAGCAGCA--GGGATAAAGGCAATGGGGCTAAGATTGTT    941
                     ||||.|.|||.||  |.||  ||.||.||.||.|||||.||...||||||
BL02152___puc    891 TGAAACAGCACTA--ATCAAGGGCATCAAAGCGATGGGACTCGAATTGTT    938

BSNT_04817___    942 TGGAGATGACAGCTGCAAAA---TGCCTGTTGTCACCTGTGTCGAAATTC    988
                     |...||.|   ||.|.||||   ||||....|||||.||||| ||||.|.
BL02152___puc    939 TACGGAAG---GCCGGAAAAAGCTGCCGACCGTCACTTGTGT-GAAAGTT    984

BSNT_04817___    989 CCGG--CGGCATTGACGGCGATTCTGTCCGTGACATGCTGCTGGCAC-AA   1035
                     ||.|  ||| .||||||..|||..||||.|..|.|||.||||.| || |.
BL02152___puc    985 CCTGATCGG-GTTGACGCAGATCTTGTCAGGAAGATGATGCTTG-ACGAC   1032

BSNT_04817___   1036 TTCGGTATTGAAATCGCCAGCTCATTCGGCCCGCTCGCAGGGAAGATCTG   1085
                     |||||..|.||||||||||||||.|||||.|||||.||.||.|||||.||
BL02152___puc   1033 TTCGGCGTCGAAATCGCCAGCTCTTTCGGGCCGCTGGCCGGAAAGATATG   1082

BSNT_04817___   1086 GAGAATCGGCACGATGGGGTACAGCTGCAGAAAAGAAAACGTGCTATTCG   1135
                     |||||||||.||||||||.|||||||||.|.||||||||.||.||.||  
BL02152___puc   1083 GAGAATCGGAACGATGGGATACAGCTGCCGGAAAGAAAATGTTCTTTT--   1130

BSNT_04817___   1136 TGC-TTGCCGGGT-TAGAGGCTGTGCTTCTCAGACATAACGCAG------   1177
                     |.| |||.|.|.| |.||.||||   ||||||   .|..|.|||      
BL02152___puc   1131 TACATTGGCTGCTCTCGAAGCTG---TTCTCA---TTCGCACAGGTGCTT   1174

BSNT_04817___   1178 --GAATCGAAGCAGGAAAAGCGCTCCAAGCAGCGCTGAATGTGTATGAAA   1225
                       |.||||  .|.|||||.|||||.||.||.||.|||.||.|.|||.|..
BL02152___puc   1175 CAGTATCG--CCGGGAAATGCGCTTCAGGCGGCACTGGATTTCTATCATG   1222

BSNT_04817___   1226 ACGCTGGCCGCCAGGCAGCGGTGTAA   1251
                     |             |.||        
BL02152___puc   1223 A-------------GTAG--------   1227


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