Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04817 and BL02152
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:01
# Commandline: needle
# -asequence dna-align/BSNT_04817___yurG.1.5803.seq
# -bsequence dna-align/BL02152___pucG.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04817___yurG-BL02152___pucG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04817___yurG-BL02152___pucG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04817___yurG
# 2: BL02152___pucG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1326
# Identity: 869/1326 (65.5%)
# Similarity: 869/1326 (65.5%)
# Gaps: 174/1326 (13.1%)
# Score: 2655.0
#
#
#=======================================
BSNT_04817___ 1 GTGTCA---GGCAGAAGAGAATTATGCACCCCGTTAAGAACGATTATGAC 47
.||.|| ||| |||..|||| |..|||..|.|.||.||||||||
BL02152___puc 1 ATGACAATTGGC-GAAATGAAT-----ATTCCGAAACGGACAATTATGAC 44
BSNT_04817___ 48 GCCAGGGCCTGTTGAGGTTGATCCGCGTGTATTAAGAGTAATGAG----- 92
.||.||.|||||.||||||.||||| |||||..||||
BL02152___puc 45 TCCCGGTCCTGTCGAGGTTCATCCG---------AGAGTGCTGAGGGCGC 85
BSNT_04817___ 93 ----CACCCCGGTTGTCGGCCAATTTGATCCGGCGTTTACAGGTATTATG 138
|.|.||.||..|.||.||.||.|||||.||.|||||||..||.|||
BL02152___puc 86 TTTCCTCACCTGTACTGGGACAGTTCGATCCTGCATTTACAGACATGATG 135
BSNT_04817___ 139 AATGAAACG--ATGGAGATGCTTCGGGAGCTGTTCCAAAC----AAAAAA 182
||.| ||| ||||.|.||||||||.||.|.||||.||| ||.|||
BL02152___puc 136 AACG--ACGTCATGGCGCTGCTTCGGCAGATTTTCCGAACGACAAATAAA 183
BSNT_04817___ 183 CCGCTGGGCATACCCGATTGACGGCACTTCACGGGCGGGAATTGAAGCAG 232
|||||||.||||||.|||||.||.||.|||||.||..|||||||.|
BL02152___puc 184 ----TGGGCATTCCCGATAGACGGGACATCGCGGGCCGGGCTTGAAGCCG 229
BSNT_04817___ 233 TGCTGGCTAGTGTGATAGAGCCGGAAGATGATGTGCTCATTCCCATTTAC 282
|.||.||.|||.|.||..|.||||..||....||||||||||||||||.|
BL02152___puc 230 TCCTTGCCAGTCTCATCAAACCGGGGGACAGGGTGCTCATTCCCATTTTC 279
BSNT_04817___ 283 GGCCGTTTCGGTTATTTGCTGACTGAAATCGCCGAGCGATATGGGGCAAA 332
||.||.|||||.|||.||||..|.||.||...|||.||.||...|||..|
BL02152___puc 280 GGACGGTTCGGCTATCTGCTTGCCGAGATTTGCGAACGGTACCAGGCTGA 329
BSNT_04817___ 333 TGTTCATATGCTTGAGTGCGAATGGGGA-ACGGTTTTTGACCCG---GAG 378
||||.|||...|.||.|||...|||||| || ||||||||.||| |||
BL02152___puc 330 TGTTTATACAATGGAATGCCCGTGGGGAGAC-GTTTTTGAACCGAAAGAG 378
BSNT_04817___ 379 GACATCATACGGGAGATAAA--AAAAG--TGAAGCCGAAAATTGTGGCAA 424
|.|||| |.|| ||| |||.| .|||.|||.|.|||||.||..
BL02152___puc 379 GTCATC-TCCG------AAATCAAACGGACGAAACCGGAGATTGTTGCGG 421
BSNT_04817___ 425 TGGTGCATGGAGAAACATCGACAGGACGGATTCACCCGCTGAAAGCCATC 474
|.|||||.||.||.||||||||.|||.|.|||||.|||||..|||..||.
BL02152___puc 422 TTGTGCACGGCGAGACATCGACGGGATGCATTCAGCCGCTCGAAGAAATT 471
BSNT_04817___ 475 GGCGAAGCCTGCCGCACCGAGGA--------TGCATTGTTTATCGTCGAT 516
|||...|||||||| ||| |||.||||.|| ||||||
BL02152___puc 472 GGCCGGGCCTGCCG------GGAGCTTGATGTGCTTTGTGTA--GTCGAT 513
BSNT_04817___ 517 GCAGTCGCAACGATTGGGGGCTGCGAGGTTAAAGTCGATGAATGGAAGAT 566
||.||.||.||.||.||.|||...||.||.||....|||||||||....|
BL02152___puc 514 GCGGTGGCTACAATCGGCGGCACGGATGTCAATACGGATGAATGGTGTCT 563
BSNT_04817___ 567 TGACGCTGCCATCGGCGGAACGCAAAAGTGTTTGTCTGTGCCCTCAGGAA 616
||||||.|.|.|||||||.||||||||||||||.||.||.||.|||||.|
BL02152___puc 564 TGACGCGGTCGTCGGCGGTACGCAAAAGTGTTTATCCGTTCCTTCAGGTA 613
BSNT_04817___ 617 TGGCGCCGATTACATATAATGAG-CGGGT-----GGCGGACGTGATTGCA 660
||||||||||.||||.||| .|| ||||| .||| |.|.|.||.|
BL02152___puc 614 TGGCGCCGATCACATTTAA-CAGCCGGGTTGAAAAGCG--CATCAATGAA 660
BSNT_04817___ 661 GCTCGCAAAAAGGTAGAACGCGGGATTGCGACACAAGCTGACAGTGAA-- 708
.|.||||||||||||||.||.|||||.||| ||.|||
BL02152___puc 661 ---AGGAAAAAGGTAGAACGGGGCATTGCCACA---------AGAGAAGA 698
BSNT_04817___ 709 ----GCGCTT---TCGGGAAATCG---GCCGATCACAAGCAACTACTTTG 748
|.|||| .||||| || ||||||..|.|||||.||.||||
BL02152___puc 699 TATCGTGCTTGAAACGGGA---CGCTTGCCGATTTCCAGCAATTATTTTG 745
BSNT_04817___ 749 ATTTGAGCCAGCTTGA-GGATTATTGGAGCGAAAGACGGCTCAATCATCA 797
|..|..||..|| ||| |||||||||||||...||.||.||.||||||||
BL02152___puc 746 ACCTCGGCATGC-TGATGGATTATTGGAGCCCGAGGCGCCTTAATCATCA 794
BSNT_04817___ 798 TACAGAAGCGACGACGATGCTGTACGCCTTACGTGAGGGAGTCAGACTGG 847
||||||||||||..||||||||||||.|||.||.||.||||...|..|.|
BL02152___puc 795 TACAGAAGCGACTTCGATGCTGTACGGCTTGCGCGAAGGAGCGCGGGTCG 844
BSNT_04817___ 848 TGCTTGAAGAAGGTCTTGAGGCGCGTTTC----GAGCGGCATCGGCACCA 893
|.|||||.|||||.||....|.|||.||| || ||.||||.|||
BL02152___puc 845 TTCTTGAGGAAGGGCTCCGCGAGCGATTCTCAAGA----CACCGGCTCCA 890
BSNT_04817___ 894 TGAAGCCGCATTAGCAGCA--GGGATAAAGGCAATGGGGCTAAGATTGTT 941
||||.|.|||.|| |.|| ||.||.||.||.|||||.||...||||||
BL02152___puc 891 TGAAACAGCACTA--ATCAAGGGCATCAAAGCGATGGGACTCGAATTGTT 938
BSNT_04817___ 942 TGGAGATGACAGCTGCAAAA---TGCCTGTTGTCACCTGTGTCGAAATTC 988
|...||.| ||.|.|||| ||||....|||||.||||| ||||.|.
BL02152___puc 939 TACGGAAG---GCCGGAAAAAGCTGCCGACCGTCACTTGTGT-GAAAGTT 984
BSNT_04817___ 989 CCGG--CGGCATTGACGGCGATTCTGTCCGTGACATGCTGCTGGCAC-AA 1035
||.| ||| .||||||..|||..||||.|..|.|||.||||.| || |.
BL02152___puc 985 CCTGATCGG-GTTGACGCAGATCTTGTCAGGAAGATGATGCTTG-ACGAC 1032
BSNT_04817___ 1036 TTCGGTATTGAAATCGCCAGCTCATTCGGCCCGCTCGCAGGGAAGATCTG 1085
|||||..|.||||||||||||||.|||||.|||||.||.||.|||||.||
BL02152___puc 1033 TTCGGCGTCGAAATCGCCAGCTCTTTCGGGCCGCTGGCCGGAAAGATATG 1082
BSNT_04817___ 1086 GAGAATCGGCACGATGGGGTACAGCTGCAGAAAAGAAAACGTGCTATTCG 1135
|||||||||.||||||||.|||||||||.|.||||||||.||.||.||
BL02152___puc 1083 GAGAATCGGAACGATGGGATACAGCTGCCGGAAAGAAAATGTTCTTTT-- 1130
BSNT_04817___ 1136 TGC-TTGCCGGGT-TAGAGGCTGTGCTTCTCAGACATAACGCAG------ 1177
|.| |||.|.|.| |.||.|||| |||||| .|..|.|||
BL02152___puc 1131 TACATTGGCTGCTCTCGAAGCTG---TTCTCA---TTCGCACAGGTGCTT 1174
BSNT_04817___ 1178 --GAATCGAAGCAGGAAAAGCGCTCCAAGCAGCGCTGAATGTGTATGAAA 1225
|.|||| .|.|||||.|||||.||.||.||.|||.||.|.|||.|..
BL02152___puc 1175 CAGTATCG--CCGGGAAATGCGCTTCAGGCGGCACTGGATTTCTATCATG 1222
BSNT_04817___ 1226 ACGCTGGCCGCCAGGCAGCGGTGTAA 1251
| |.||
BL02152___puc 1223 A-------------GTAG-------- 1227
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