Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02773 and BL02151
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:32
# Commandline: needle
# -asequence dna-align/BSNT_02773___ymcC.1.5803.seq
# -bsequence dna-align/BL02151___ymcC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02773___ymcC-BL02151___ymcC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02773___ymcC-BL02151___ymcC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02773___ymcC
# 2: BL02151___ymcC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 632
# Identity: 335/632 (53.0%)
# Similarity: 335/632 (53.0%)
# Gaps: 172/632 (27.2%)
# Score: 712.5
#
#
#=======================================
BSNT_02773___ 1 TTGAACGGT-ATCGCATGGATGATTGTTTT----CTGTGAAATTGCGTTT 45
|| || |||.|.||||.||| .||||||||.|..|||
BL02151___ymc 1 -------GTGAT----TGGTTTATTGATTTTAGCTTGTGAAATCGGCTTT 39
BSNT_02773___ 46 TGGGTTGTCATTGTATTGGGGCTTGCTGTACGTTACGTATTCAAACGACA 95
|||.||.|.|||.|..|.||.|||..|.|.||.|| ||| |.||
BL02151___ymc 40 TGGATTTTTATTCTGCTTGGACTTATTTTTCGCTA--TAT------GGCA 81
BSNT_02773___ 96 TAC----ATTAGGACTGCTAT-----TCCTTGGCTTAACTCCAGTTATCG 136
..| |..||| |||.|.| |..|||..|..||.||.|||.|.|
BL02151___ymc 82 GGCTGGAAAAAGG-CTGGTTTGATCATGTTTGCATGCACACCGGTTTTGG 130
BSNT_02773___ 137 ATT---TGATTTTGTTAGCGGCAAC------TGGTGTGGACCTTTACCGC 177
||| ||.||||| ||.||||| ||.|.||.||..|
BL02151___ymc 131 ATTTACTGCTTTTG---GCTGCAACGTCGCTTGATCTGCACAAT------ 171
BSNT_02773___ 178 GGAGCCTCAGCGACCGCA------GCCCATGGGATTGCAGCTGTTTACAT 221
||.|| ||.|.||.| | ||.||.||.||.||.|||||.||
BL02151___ymc 172 GGGGC----GCAAGCGGATGTTTTG--CACGGCATCGCCGCCGTTTATAT 215
BSNT_02773___ 222 CGGTATATCG-----ATCGCTTATGGAAAACAAATGATTCAATGGGCAGA 266
||| || |||||.|..||.|..|..|||||..|||||||.||
BL02151___ymc 216 CGG-----CGTCAGCATCGCGTTCGGGAGCCGCATGATCAAATGGGCGGA 260
BSNT_02773___ 267 TGAAAAGTT--CCAATAT---TATG----------------TGACAAAAA 295
|||||.||| || ||| |.|| |||| |
BL02151___ymc 261 TGAAAGGTTTGCC--TATCGCTTTGCCGGAGGTCCGAAGCCTGAC----A 304
BSNT_02773___ 296 AAGGCGCAAAACCGCTGAAACGTTTTGGAATGGACCATGCCAAGCACG-- 343
||||| ||||.| |..||.|.|||.||.|||||..|.|
BL02151___ymc 305 AAGGC------CCGCAG------TACGGCAGGGAACACGCCAAAAAAGAG 342
BSNT_02773___ 344 -GTGCGAAAGGCTGGCTAAGACATGT----GC-TGGCCTACTTAATTGGT 387
||| ||||||||.|..|.|||.| || |||| |.||.||.
BL02151___ymc 343 CGTG---AAGGCTGGTTTCGCCATTTCATCGCATGGC-----TGATCGGA 384
BSNT_02773___ 388 GCGGGACTATTGGCAGGGATG-ATCTATTTTATCAATGACTCTGCCCGAA 436
||||..||..||||.|||||| |.|| .||.|||...|||.|.|...|||
BL02151___ymc 385 GCGGCTCTGCTGGCCGGGATGCACCT-GTTCATCGGCGACCCGGAAAGAA 433
BSNT_02773___ 437 CCGAGGCGTTGAGCGGCA----TTCTTAAACTGTGGACTGTCATTATAGG 482
|.||..|.||.|.|.||| ||||| |.|||.|..||||..|.|.
BL02151___ymc 434 CGGAACCATTAATCCGCATCGCTTCTT----TATGGTCGATCATCCTTGT 479
BSNT_02773___ 483 CATTGACTTTCTCATTACAG--CCAGCTATTTTA---TTTGGCCAAAAAA 527
|||.||.|||.| .||||| .|||| |||| |||..||
BL02151___ymc 480 CATCGATTTTTT--GTACAGTTTCAGC---TTTACCCTTTTTCC------ 518
BSNT_02773___ 528 AGA-GAAAGCTTCGGCGAATCTCAGGAGTTAA 558
|| |||||| ..|||||
BL02151___ymc 519 -GAGGAAAGC---------------CCGTTAA 534
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