Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04790 and BL02148
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:01
# Commandline: needle
# -asequence dna-align/BSNT_04790___yunD.1.5803.seq
# -bsequence dna-align/BL02148___yunD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04790___yunD-BL02148___yunD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04790___yunD-BL02148___yunD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04790___yunD
# 2: BL02148___yunD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1487
# Identity: 966/1487 (65.0%)
# Similarity: 966/1487 (65.0%)
# Gaps: 229/1487 (15.4%)
# Score: 2911.0
#
#
#=======================================
BSNT_04790___ 1 ATGAAGGAGAAGCTCCGCTTATAT----CATACAAATGATTTGCACAGCC 46
||||.|||.||||||| |||| |||||.||.|||||||||||||
BL02148___yun 1 ATGACGGAAAAGCTCC----ATATCTACCATACGAACGATTTGCACAGCC 46
BSNT_04790___ 47 ATTTTGAAAACTGGCTGAAAATTGTAGATTATATCGAG-CAGAAA---AG 92
|||||||||||||||.||||||.||.|||||.||..|| ||.||| ||
BL02148___yun 47 ATTTTGAAAACTGGCCGAAAATCGTCGATTACATTCAGACACAAAGACAG 96
BSNT_04790___ 93 AA-----AAGAGCATCAGTCAGACGGCGAAGAGACGCTCGTTTTTGATAT 137
|| |||||| |.||.|||||...|||..|.||.||..|
BL02148___yun 97 AAACATGAAGAGC---------AGGGGGAAGAAGTGCTTTTGTTCGACCT 137
BSNT_04790___ 138 TGGCGATCATCTTGATCGTTTTCAATTCG-TGACAGAGGCGACATTCGGA 186
.|||||||||.|.|| |...|||.||.|| |..|.|||||.||.||||||
BL02148___yun 138 CGGCGATCATGTCGA-CAGATTCCATCCGATATCTGAGGCTACCTTCGGA 186
BSNT_04790___ 187 AAAGCGAATGTTGATCTCTTAAACCGCCTTCACATTGATGGAGCGGCGAT 236
|||||||||||.||.||.||.|||||.||.||...|||||..||..||||
BL02148___yun 187 AAAGCGAATGTGGAGCTGTTGAACCGTCTGCAGTATGATGCTGCAACGAT 236
BSNT_04790___ 237 CGGCAATAACGAAGGGATTACGCTTCCGCATGAAGAGCTTGCTGC-CTTA 285
|||.||.||.|||||.|||||.||.||||||.|.|||.|.|.|.| |||
BL02148___yun 237 CGGGAACAATGAAGGAATTACACTGCCGCATCAGGAGTTGGATACACTT- 285
BSNT_04790___ 286 TATGATCATGCTGAATTTCCTGTCATCGTCTCTAACCTGTTTGA-TAAAA 334
|||||..|.|||.|.|||||||||.|.|||||.||..||||||| ..|.|
BL02148___yun 286 TATGACAACGCTCAGTTTCCTGTCGTTGTCTCCAATTTGTTTGACGGAGA 335
BSNT_04790___ 335 ACGGAAACCGTCCGTCCTGGGCGGTGCC----TTACCATATCAAATCATT 380
|.||||...|.||| .||||||.|.||| ||.| |||||....|
BL02148___yun 336 AGGGAAGAGGCCCG-GCTGGGCAGCGCCGTATTTGC----TCAAAAAGGT 380
BSNT_04790___ 381 GAAAAACGG------TATGTCCATTGCTTTCTTAGGTGTAACTGTGCCGT 424
|||.|.||| |.|..||||| .|.|||||.||.||.||||
BL02148___yun 381 GAAGAGCGGCGCAACTCTTGCCATT------CTCGGTGTGACAGTCCCGT 424
BSNT_04790___ 425 ATTATCCTGTATATGACAAGCTGGGATGGACAGTAACGGATGCTCTTGAA 474
|.|||||..|.|||..|.||||.||.|||||.||.||.||.||..|||||
BL02148___yun 425 ACTATCCGATCTATCGCCAGCTTGGCTGGACGGTTACAGACGCATTTGAA 474
BSNT_04790___ 475 AGCATAAAGGAAACCATTCTGGATGTG-----AAAGGGCAGGCTGATATT 519
||||| .|||.| .||.|| |.||| ||||...|.||.||.|.|
BL02148___yun 475 AGCAT--CGGAGA-GATGCT--AAGTGAAATCAAAGAAAAAGCCGACACT 519
BSNT_04790___ 520 ATCGTTCTGCTGTCACATTTAGGCATTCTTGATGATCAG-GCAGTGGCTG 568
.||.|.||.||.|||||..|.||||||.|.||.|||||| || ||.||.|
BL02148___yun 520 GTCATCCTTCTTTCACACCTTGGCATTTTGGACGATCAGCGC-GTCGCGG 568
BSNT_04790___ 569 AAGCGGTGCCTGAGATTGATGTAATCCTCGAATCACATACCCATCATTTG 618
|.||..|.||.||.||.||..|.|||||||..||.||.||||||||..||
BL02148___yun 569 AGGCTTTTCCCGAAATCGACCTGATCCTCGGCTCCCACACCCATCACCTG 618
BSNT_04790___ 619 CTTGAAGATGGACAAG-TGGTGA---ATGGGGTACTGCTGGCCAGCGCCG 664
||||||||.|| | ||.||| |.||.||..||||||||.||||.|
BL02148___yun 619 CTTGAAGAAGG----GATGATGAAAGACGGCGTTATGCTGGCCTGCGCGG 664
BSNT_04790___ 665 AGAAATACGGGCATTATGTCGGCTGTGTAGAA-------ATCACGGTGGA 707
|.||.||||||.|.||||||||...|||.||| ||.||||
BL02148___yun 665 AAAAGTACGGGAACTATGTCGGTCATGTTGAACTGACATATAACGG---- 710
BSNT_04790___ 708 CAGCG--TACAGCGAAGCATCATCAGCAAAACGGCTTCTGTGCA-GAACA 754
|||| | |.||| ||||| |||||| |.|| || |||.|
BL02148___yun 711 -AGCGCTT---GAGAA-CATCA-CAGCAA--------CCGT-CATGAAGA 745
BSNT_04790___ 755 TGGCGGAATGGACAGGAGAATCCGCAGAAACAAAAGCG-TTTCTCAATGA 803
.|||.||.||||..|.||||||.|..||.|| .|..|| |||||.||.||
BL02148___yun 746 CGGCAGATTGGAATGAAGAATCAGAGGAGAC-GATTCGTTTTCTGAAGGA 794
BSNT_04790___ 804 AAAAGAACGAGAAGCCGAGGAGAAGCTGTCC-----GATGCCGTTGCAGA 848
||||||..|||||||| |||.| |.||| ||.|...|||| ||
BL02148___yun 795 AAAAGAGAGAGAAGCC--GGACA---TCTCCTTGAAGAGGAAATTGC-GA 838
BSNT_04790___ 849 GCTTGCACAAGATGCTGAGGTGAA-----GTGGTT-TGAAGAATCAGAGC 892
..|||.||||.|..|| |||| .||||| .|.||| |||
BL02148___yun 839 CATTGGACAACACCCT----TGAAACCGCCTGGTTCCGCAGA-----AGC 879
BSNT_04790___ 893 TGCCTT-------TGCTTTTGGCATACGCCTTAAAGGAATGGTGCGAGAC 935
..|||| ||| |||||.|.|||||||||||||||||.|||.|
BL02148___yun 880 GCCCTTCCGCAAATGC---TGGCAGATGCCTTAAAGGAATGGTGTGAGGC 926
BSNT_04790___ 936 GGACATCAGTATGGTCAATTCAGGTGTCATT---CTCG-GTC-CGCTAAA 980
|||.|||.|.||||||||.||||| |||| ||.| ||| |..|.|.
BL02148___yun 927 GGAAATCGGGATGGTCAACTCAGG---CATTGTGCTGGAGTCTCTTTCAC 973
BSNT_04790___ 981 AGCAGGTCCTGTGAC-AAAGCTGGATCTGCACCGCATCTGTCCGCATCCG 1029
| ||||||.||||| ||||| .|||.|.|||||||||||||||||||||
BL02148___yun 974 A--AGGTCCGGTGACGAAAGC-CGATGTTCACCGCATCTGTCCGCATCCG 1020
BSNT_04790___ 1030 ATCAACCCGGTGGCTGTCCGC---------CTGACGGGAGAAGAATTGAA 1070
||.||.||||| | |||||||||..|||..||||
BL02148___yun 1021 ATTAATCCGGT---------CAAACTGAAGCTGACGGGACGAGAGCTGAA 1061
BSNT_04790___ 1071 GGAAACCATTGTCCATGCCGCTTCCGAACAAATGGAGCAGCTCCGGATCA 1120
.||...|||..|||||||..|.||.|||||||..|||.||||.||.||.|
BL02148___yun 1062 AGAGGTCATCCTCCATGCATCATCAGAACAAACCGAGAAGCTGCGCATTA 1111
BSNT_04790___ 1121 AAGGACTTGGCTTCCGCGGAGAAGTGATGGGGAAAATGGTGTATGCCGGC 1170
||||.||.||.||.|||||.||||||||||||||.|||.|||||||||||
BL02148___yun 1112 AAGGGCTCGGTTTTCGCGGCGAAGTGATGGGGAAGATGCTGTATGCCGGC 1161
BSNT_04790___ 1171 GTTGAGGTAGAAACGAAACGGCTCGATGACGGGATCACCCACGTCACCCG 1220
.|| ||..||.||..|||| || ||||| .||
BL02148___yun 1162 CTT------GACCCGGAAAAGCTC----------TC-----CGTCA-ACG 1189
BSNT_04790___ 1221 GATC--ACACTGAACGGGGAAGAT--ATTAAAAAACATAAACAATACTCC 1266
||.| |||.|||| ||.||| .|| .|||.|.
BL02148___yun 1190 GAGCGGACATTGAA----GATGATGCGTT--------------CTACACG 1221
BSNT_04790___ 1267 GTTGCGGTGCTTGATATGTTTACGCTCGGCAAACTGTTTCC-GTTGATTC 1315
.|.||...|.|||||||||||||.|||||.|..|||||||| ||| ||.|
BL02148___yun 1222 CTCGCCACGATTGATATGTTTACACTCGGAACGCTGTTTCCTGTT-ATCC 1270
BSNT_04790___ 1316 GCGATGCTGCAGAAAAAGAATATTTTATGCCGGAATTTTTGCGGGATCTG 1365
|||||||.|.|||.|..||.||.||||||||.|||||..||||.||||||
BL02148___yun 1271 GCGATGCGGAAGATATTGACTACTTTATGCCTGAATTCCTGCGCGATCTG 1320
BSNT_04790___ 1366 CTTGCTTGGAAGCTTGCACAA-------------TAA 1389
||.||.||||||| ||.|.|| |||
BL02148___yun 1321 CTCGCCTGGAAGC-TGAAAAAAGCAAACCGGTCCTAA 1356
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