Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04775 and BL02139
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:00
# Commandline: needle
# -asequence dna-align/BSNT_04775___yutH.1.5803.seq
# -bsequence dna-align/BL02139___yutH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04775___yutH-BL02139___yutH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04775___yutH-BL02139___yutH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04775___yutH
# 2: BL02139___yutH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1111
# Identity: 710/1111 (63.9%)
# Similarity: 710/1111 (63.9%)
# Gaps: 191/1111 (17.2%)
# Score: 2066.0
#
#
#=======================================
BSNT_04775___ 1 ATG---GTGAA--AGGTACAATAAAAGAAAAATACGG------CATTCAC 39
||| ||||| ||.| .||.||||||||||.||| |||||.|
BL02139___yut 1 ATGTCCGTGAAGGAGCT--GATCAAAGAAAAATTCGGAATCTACATTCGC 48
BSNT_04775___ 40 -ATCAGGCAGCTTTCCAT-GTACCAGCACACATATCAATGC-TTTCAGAC 86
||| ||.||| ||||..| .|.|||| |.|| |||||.||
BL02139___yut 49 GATC--------TTACATCGTACTTG---TCTTATC-AGGCTTTTCATAC 86
BSNT_04775___ 87 GCCTAATTC-ATACTTTCTGATTGTCCCCGTTTCCCAATT--CTCAGAAA 133
.||.||||| || .|||.||||.|||||.||||||||.|| .||||.|
BL02139___yut 87 CCCGAATTCGAT-GTTTTTGATCGTCCCTGTTTCCCACTTGAGTCAGGA- 134
BSNT_04775___ 134 CAGAGCTGGCGGA---GCTTTATTACATGAGTCAGTATTTACAAGAACAA 180
.||||||||||| | ||||.| ||||||||||||||.||||||||.
BL02139___yut 135 -TGAGCTGGCGGAATTG-TTTAGT--ATGAGTCAGTATTTGCAAGAACAG 180
BSNT_04775___ 181 AGTGACCCATACGTTTCGGTTTTTATCTTTACAAAAGAAGGTGAACTGAC 230
.|.||||||||||||||...||||||.||.|||||.||.||.||..||||
BL02139___yut 181 CGCGACCCATACGTTTCATCTTTTATATTGACAAAGGACGGGGAGATGAC 230
BSNT_04775___ 231 ATTTGAACATGAGGGAAAA-----------ACGTACGCT--------CTG 261
.||||| |||.|| |.|| ||| |||
BL02139___yut 231 GTTTGA-------GGAGAATGGCGTCTCATATGT--GCTTCTTCAAGCTG 271
BSNT_04775___ 262 CTGAAGGCGGCCCCCCCTTATTCAAACAGG-GCGTTCTCCATTGGAGCGG 310
|| ||||.|.|.| |||||||| .|||| ||..||||.||||
BL02139___yut 272 CT--------CCCCGCATGA--CAAACAGGTCCGTT-TCATTTGGTGCGG 310
BSNT_04775___ 311 AGCTTGCGGAATTTCACCGAAAAGGCCGAGGATATCCATATGAGGTGAAG 360
||||.||.||||||||.|..||.||..|.|||||.||.||.|||||.||.
BL02139___yut 311 AGCTCGCCGAATTTCATCACAAGGGAAGGGGATACCCTTACGAGGTAAAA 360
BSNT_04775___ 361 GCAGC----CGGAAGAATCGGCCAGTGGAAGGATCTGTGGGGAAAACGAA 406
|.|.| ||| |||||.||||||||.||.||.|||||.|||||..
BL02139___yut 361 GAAACCTCGCGG----ATCGGGCAGTGGAAAGAACTTTGGGGGAAACGGC 406
BSNT_04775___ 407 TTGATCAGCTGGAAGCATTCTG------------GCAGAGAAAGGTTCAG 444
|.||.|||||||||..|||||| |||| |.|||| |||
BL02139___yut 407 TCGACCAGCTGGAACAATTCTGGATTCAAAAAACGCAG-GCAAGG--CAG 453
BSNT_04775___ 445 ACCCCTCCGCATGAGCCATTCGATAAAAAAATGATCGAATCATTTCCATA 494
|.|| ||||.||.||.|||.||.|.||||||||.|||||.||
BL02139___yut 454 ------CTGC---AGCCCTTTGAAAAACAATTTATCGAATCGTTTCCTTA 494
BSNT_04775___ 495 TTATTTAGGACTGTCAGAAAACGCGATACAATATTTAGTGGACACTGAGC 544
||||.|.||..|..|.|||||.|||||.||||||||.|..||.||.||..
BL02139___yut 495 TTATCTCGGTTTAACCGAAAATGCGATTCAATATTTGGCAGATACCGAAT 544
BSNT_04775___ 545 TGGATGACAAGCCCCAAGCCGCTGATTCAGGAACGATATGCCATCAGCGG 594
|||||||..||||.||.||||||||.||.||||||||.|||||.||||||
BL02139___yut 545 TGGATGATCAGCCGCAGGCCGCTGACTCGGGAACGATTTGCCAGCAGCGG 594
BSNT_04775___ 595 AT----GGAAAGGCATACATGGTCACCG-GAATCATTGATCAGGATTCCG 639
.| .|..||||.|..|.| || ||..|..|.||.|..||.|||
BL02139___yut 595 CTCACCTGCGAGGCTTTAAGG-----CGCGAGCCGCTTATTAAAATCCCG 639
BSNT_04775___ 640 GCGGATTGGGTGTTTGACCACGCTTCCCGTGATTTGGCTGAATATATGAG 689
..|||.|||||||||||.||.||..||.|.|||.|.||.|||||| |
BL02139___yut 640 ATGGAATGGGTGTTTGATCATGCGGCCAGGGATCTTGCGGAATAT----G 685
BSNT_04775___ 690 GCATACG-TTTTTGCATCACAGACAAGATTTTAAT--CAGCAGGGCTT-T 735
.||.|.| ||.||.||..|.||..||.|.||.||| .|.||.| || |
BL02139___yut 686 CCAGAAGCTTGTTTCACGAAAGGAAAAACTTCAATGAAATCATG--TTGT 733
BSNT_04775___ 736 CTCTTTTTACAGGAATACGAGCAAGTCACACCGCTGTCTTCATTTTCGAA 785
.|||| |||.|||||||.||||.|.|.|||||.||.||||||||.||
BL02139___yut 734 TTCTT----CAGCAATACGAACAAGCCGCGCCGCTATCCTCATTTTCTAA 779
BSNT_04775___ 786 ACGCCTTTTATACAGCCGTCTGCTTTTCCCGCTTCATTATTTTGAAATCG 835
.||.||..|.||||||.|.|||||.||.|||||.||.||||||||.| ||
BL02139___yut 780 GCGGCTGATGTACAGCAGGCTGCTGTTTCCGCTCCACTATTTTGAGA-CG 828
BSNT_04775___ 836 -TAGAAAGCTATTACATGTCATCAGAATCAGAAAAGCATTATTTTGAAGA 884
|.|||.|.||.||.||.||..|.||||||||..|.|||||||||||| |
BL02139___yut 829 CTTGAAGGGTACTATATTTCTCCTGAATCAGAGCACCATTATTTTGAA-A 877
BSNT_04775___ 885 ACAG-CTTAACTTCATTCTTAATGACTGTGGGCG-----TTATGAACAAT 928
.||| ||..||| || |||.||.|| ..|||| .|||||.||||
BL02139___yut 878 GCAGACTCGACT--AT--TTATTGTCT-CAGGCGCCGGCATATGAGCAAT 922
BSNT_04775___ 929 TTCTCAATACAGCGCAGGAATTCATGAATAT-GCGGG---------CGCA 968
|.||.|| .||..||||.||| || ||||| ||||
BL02139___yut 923 TCCTGAA--------CGGCTTTCAAGAA-ATGGCGGGCATGAGATCCGCA 963
BSNT_04775___ 969 G-------AAGC-TGTTTGTTCCACGCGTCAGCTGGCTCGGCAAAGG-CA 1009
| |||| || ||.|..||||..||||| |.||||| ||
BL02139___yut 964 GGATTGATAAGCATG------CCGCCTGTCAATTGGCT--GAAAAGGACA 1005
BSNT_04775___ 1010 GCTCAGGGTGA 1020
.|..||
BL02139___yut 1006 CCATAG----- 1011
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