Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01403 and BL02129
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:55
# Commandline: needle
# -asequence dna-align/BSNT_01403___yfiY.1.5803.seq
# -bsequence dna-align/BL02129___yfiY.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01403___yfiY-BL02129___yfiY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01403___yfiY-BL02129___yfiY.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01403___yfiY
# 2: BL02129___yfiY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1032
# Identity: 681/1032 (66.0%)
# Similarity: 681/1032 (66.0%)
# Gaps: 108/1032 (10.5%)
# Score: 2086.0
#
#
#=======================================
BSNT_01403___ 1 ATGAAAAAGCATATCAGCATGCTATTCGT--ATTTTTAATGGCCTTTATG 48
|||||.| .||| || |||.|| |..|||||.
BL02129___yfi 1 ATGAAGA----------GATG------GTCAATTGTT----GGATTTATC 30
BSNT_01403___ 49 GTACTTTCTGCCTGTAATAGTTCAGAAAGTTCAA-----GCA-ACAGC-G 91
| |||| ||| ||..|.||||| ||| .|.|| |
BL02129___yfi 31 G--CTTT------------GTT-AGCGATTTCAATTCTTGCAGCCTGCGG 65
BSNT_01403___ 92 AGGGGTCAAG-------CAGCAAA-------------ACAAGA------- 114
.||.|.|||| |.||||| | ||||
BL02129___yfi 66 CGGAGGCAAGGATGACTCTGCAAAGGGCGGAGAAAATA-AAGATACGATC 114
BSNT_01403___ 115 ACGGTCAAACATGCAATGGGGACATCAGACAACATTCCCGCCAATCCAAA 164
||.||.|||||.||||||||.||...||||.|..|.||.||..|.|||||
BL02129___yfi 115 ACCGTTAAACACGCAATGGGTACGGAAGACCAAGTGCCTGCAGACCCAAA 164
BSNT_01403___ 165 ACGGATTGTTGTTTTAACAAATGAAGGAACAGAGGCGCTCTTAGCGCTTG 214
|.|..|.||.||..|.||||||||||||||.||.|||||.||.|..||.|
BL02129___yfi 165 AAGAGTCGTCGTCCTGACAAATGAAGGAACCGAAGCGCTTTTGGAACTCG 214
BSNT_01403___ 215 GCATTAAGCCGGTCGGAGCCGTAAAGTCATGGAAGGGCGACCCGTGGTAT 264
|.||.||.||.||.||.||.||.||.||.||||..|||||.||.||||||
BL02129___yfi 215 GAATCAAACCTGTGGGTGCAGTCAAATCCTGGACAGGCGATCCTTGGTAT 264
BSNT_01403___ 265 GACTATCTGAAAGATGACATGAAAGGTGTTAA--AAACGTCGGTCTTGAA 312
.|..||.|..|||..||.||||||||.||||| ||| ||||.||.|||
BL02129___yfi 265 AAGCATATTCAAGCCGATATGAAAGGCGTTAAGCAAA--TCGGACTCGAA 312
BSNT_01403___ 313 ACGGAACCGAATGTGGAAGCCATCGCAGAATTAAAGCCTGATTTGATTAT 362
...|||||||||.|.|||||.||.||.||..|.|||||||||||.||.||
BL02129___yfi 313 GGCGAACCGAATATCGAAGCGATTGCCGAGCTGAAGCCTGATTTAATCAT 362
BSNT_01403___ 363 TGGAAACAAAGTGCGCCAGGAAAAAATTTATGATCAGTT---AAATGCAA 409
.||.||.|||.||.|.||.||||||||.||.||..||.| ||| ||
BL02129___yfi 363 CGGGAATAAAATGAGACATGAAAAAATCTACGACAAGCTTGAAAA---AA 409
BSNT_01403___ 410 TTGCGCCGACTGTTTTCGCTGAATCTTTG-GCCGGGAACTGGAAGGATAA 458
||||.||||||||.|||.|||||.|..|| ||.|.||| |||||.||.||
BL02129___yfi 410 TTGCTCCGACTGTCTTCTCTGAAACGCTGCGCGGCGAA-TGGAAAGACAA 458
BSNT_01403___ 459 CCTGACTCTATACGCCAACGCGGTGAATAAGGCGGACAAAGGCAAGGAAG 508
|.|..|.||.|||||.||.|||||.||.||.|.|||.||.|||||.||||
BL02129___yfi 459 CTTCTCCCTCTACGCGAAAGCGGTAAACAAAGAGGAAAAGGGCAAAGAAG 508
BSNT_01403___ 509 TCATTGCCGATTTTGATAAACGCGTTTCTGATTTAAAAAACAAGCTGGGC 558
|..|.|..|||||.||||||...||....||.||||...|||||||.|||
BL02129___yfi 509 TTTTAGAAGATTTCGATAAAAAAGTCAGCGAATTAAGCGACAAGCTCGGC 558
BSNT_01403___ 559 GACCAGACAAACAAAACCGTTTCTGTCGTACGCTTTTTATCCGGTGAGTC 608
|||||||.|||.|||...||.||.||..|..|.|||.|..||||..|.||
BL02129___yfi 559 GACCAGAAAAAGAAACGGGTGTCGGTAATCAGATTTATGGCCGGCCAATC 608
BSNT_01403___ 609 AAGAATCTATTATACCGATTCATTCTCAGGGATTATTTTAGACCAGCTTG 658
|||.||.||.||||..|||||.|||.|.||.|||||..|.||.|||||.|
BL02129___yfi 609 AAGGATTTACTATAAAGATTCTTTCCCGGGAATTATCCTGGATCAGCTCG 658
BSNT_01403___ 659 GCTTCAAACGCCCTGAAAAACAAGTGGAGCTGTTTAAGAAACAAAAGGAC 708
|.|||||....||.||||||||.|...|.||||||.||||||||.|.|||
BL02129___yfi 659 GATTCAAGTATCCGGAAAAACAGGAAAAACTGTTTGAGAAACAAGACGAC 708
BSNT_01403___ 709 CAATTTACGTTCTCA--ACCGACAGTAAAGAATCTATTCCTGATATGGAT 756
.||||| |||.|.| ||.||.|.|||||||||.||.|||||||||||.
BL02129___yfi 709 AAATTT--GTTTTTATGACGGAAAATAAAGAATCGATCCCTGATATGGAC 756
BSNT_01403___ 757 GCTGATGTGCTGTTTTATTTCACTTATAAA---GCCGATAATGC--AAAG 801
|..|||||.|||||.||||||||.|||||| |||| ||.|| |||.
BL02129___yfi 757 GGAGATGTCCTGTTCTATTTCACATATAAACCTGCCG--AAAGCAAAAAA 804
BSNT_01403___ 802 GAAAATGAAAAATGGGCCAATC-AGTGGACAAGCAGTTCACTATGGAAAA 850
|||..|||||.|| |||.||.| |.|||||||||..|.|.||.|||||||
BL02129___yfi 805 GAAGCTGAAACAT-GGCAAAACGATTGGACAAGCGATCCGCTGTGGAAAA 853
BSNT_01403___ 851 ACCTAAAGGCCGTGAAGTCAGGTAATGCACATGAAGTCGATGACGTCG-T 899
|..|.||.||.||.||..|.||.||.||.|||||||||||.||.| || |
BL02129___yfi 854 AATTGAACGCTGTAAAAACCGGAAACGCCCATGAAGTCGACGATG-CGAT 902
BSNT_01403___ 900 ATGGACAACCGCAGGCGGAATTAAAGCCGCAAACTACCTG---CTTGATG 946
.|||||.||.||.|||||..|.|||||.|| .||.||| |||||||
BL02129___yfi 903 CTGGACGACGGCCGGCGGCGTAAAAGCAGC---GTATCTGTTCCTTGATG 949
BSNT_01403___ 947 ATATTGAAACCTACTTCTTAAAAACGAAATAA 978
|.||.||||..|||||.||||||.|..||
BL02129___yfi 950 ACATCGAAAAATACTTTTTAAAATCTTAA--- 978
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