Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03789 and BL02099
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:50
# Commandline: needle
# -asequence dna-align/BSNT_03789___prmA.1.5803.seq
# -bsequence dna-align/BL02099___prmA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03789___prmA-BL02099___prmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03789___prmA-BL02099___prmA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03789___prmA
# 2: BL02099___prmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 942
# Identity: 740/942 (78.6%)
# Similarity: 740/942 (78.6%)
# Gaps: 12/942 ( 1.3%)
# Score: 2829.5
#
#
#=======================================
BSNT_03789___ 1 TTGAAATGGTCCGAATTAAGCATTCACACAACACATGAAGCGGTCGAACC 50
.||||||||||||||.|..||||||||||.||||||||||||||.||.||
BL02099___prm 1 ATGAAATGGTCCGAAATCTGCATTCACACGACACATGAAGCGGTTGAGCC 50
BSNT_03789___ 51 TATCTCAAATATATTGCATGAAGCTGGTGCAAGTGGGGTTGTGATAGAGG 100
.|||||.|||||.|||||||||||||||||.|||||.||.|||||.||.|
BL02099___prm 51 CATCTCGAATATTTTGCATGAAGCTGGTGCGAGTGGAGTAGTGATTGAAG 100
BSNT_03789___ 101 ACCCGCTTGATTTAATTAAAGAACGTGAGAATGTGTACGGGGAAATCTAC 150
|.||||||||||||||||||||.|||||||||||.|||||.|||||||||
BL02099___prm 101 ATCCGCTTGATTTAATTAAAGAGCGTGAGAATGTATACGGAGAAATCTAC 150
BSNT_03789___ 151 CAGCTCGACCCCAATGATTACCCAGATGAGGGTGTCATTGTCAAAGCATA 200
||||||||.|||||||||||.||.|||||.||.|||||..|||||||.||
BL02099___prm 151 CAGCTCGATCCCAATGATTATCCTGATGAAGGAGTCATCATCAAAGCGTA 200
BSNT_03789___ 201 TCTGCCGGTTAACAGTTTTCTGGGCGAAACTGTAGACGGCATCAAAGAAA 250
|||.|||.|.|||||.|||.||||.||.||.|||||.||.||||||||||
BL02099___prm 201 TCTTCCGATCAACAGCTTTTTGGGGGAGACCGTAGAAGGAATCAAAGAAA 250
BSNT_03789___ 251 CGATTAATAATCTCCTTCTTTACAATATTGA-TTTGGGCAGAAACCACAT 299
||||.||||||||.||.||.||..||||||| .||||.| |.|||.|.||
BL02099___prm 251 CGATCAATAATCTGCTGCTGTATGATATTGACCTTGGAC-GCAACAAAAT 299
BSNT_03789___ 300 CACTATTTCTGAAGTAAATGAAGAAGAGTGGGCGACTGCCTGGAAAAAGT 349
|||.||....||.||.||.||||||||.||||||||.||.||||||||.|
BL02099___prm 300 CACCATCAGCGAGGTTAACGAAGAAGAATGGGCGACAGCATGGAAAAAAT 349
BSNT_03789___ 350 ATTATCATCCTGTGAAAATTTCTGAAAAGTTTACAATTGTGCCGACGTGG 399
||||||||||.|||||||||||.||.||||||||.|||||.|||||.|||
BL02099___prm 350 ATTATCATCCCGTGAAAATTTCCGAGAAGTTTACGATTGTTCCGACTTGG 399
BSNT_03789___ 400 GAGGAATATACGCCGGTCCATACTGATGAACTGATTATTGAAATGGACCC 449
||.||.||.||.|||||.|||||.||||||||.||.||.||.||||||||
BL02099___prm 400 GAAGAGTACACACCGGTTCATACGGATGAACTCATCATCGAGATGGACCC 449
BSNT_03789___ 450 GGGAATGGCTTTCGGCACAGGGACACATCCGACAACCGTACTCTGCATTC 499
|||||||||.||.||.|||||.||.||.|||||||||||.||.|||||.|
BL02099___prm 450 GGGAATGGCGTTTGGAACAGGCACCCACCCGACAACCGTCCTTTGCATAC 499
BSNT_03789___ 500 AGGCGCTTGAACGCTTTGTGCAA-AAGGGTGATAAGGTGATTGATGTCGG 548
|||||||||||.|.|.||||.|| ||||| |||..|||..|.||.|||||
BL02099___prm 500 AGGCGCTTGAAAGGTATGTGAAAGAAGGG-GATTCGGTCGTGGACGTCGG 548
BSNT_03789___ 549 CACTGGTTCGGGAATTTTAAGTATTGCGGCTGCAATGCTTAAGGCTGAAT 598
.||.||..|.||.|||||.||.|||||..|.||.||||||...||..||.
BL02099___prm 549 AACGGGAACCGGCATTTTGAGCATTGCTTCAGCCATGCTTCGCGCCAAAC 598
BSNT_03789___ 599 CGGTTCATGCCTACGATCTTGATCCCGTGGCTGTAGAAAGTGCACGCCTC 648
.||||.|.|..||.|||||.|||||.||.||.||.|||||.||.|||.|.
BL02099___prm 599 AGGTTGAAGGATATGATCTCGATCCTGTAGCCGTTGAAAGCGCCCGCTTG 648
BSNT_03789___ 649 AATCT-CAAGCTGAACAAAGTCAGCGAT-ATTGCTCAAG-TGAAGCAAAA 695
|| || ||||||.||.|||||||||||| || .||.|| |.||||||||
BL02099___prm 649 AA-CTCCAAGCTCAATAAAGTCAGCGATCAT--ATCGAGATTAAGCAAAA 695
BSNT_03789___ 696 CAATTTGTTAGACGGGATTGAAGGGGAACATGATGTGATTGTGGCCAACA 745
.|||.||.|.|||||..|.|||||.|||.|.||..|.||.||.|||||.|
BL02099___prm 696 TAATCTGCTTGACGGCGTCGAAGGCGAAAAAGACATCATCGTCGCCAATA 745
BSNT_03789___ 746 TTTTGGCTGAAGTCATTCTT-CGCTTTACTTCACAAGCGTACAGCCTGTT 794
|..||||.||.|||| |||| ||||||||....|||||.|||||||||||
BL02099___prm 746 TCCTGGCCGAGGTCA-TCTTGCGCTTTACGGATCAAGCATACAGCCTGTT 794
BSNT_03789___ 795 AAAAGAAGGCGGCCACTTTATTACGTCAGGAATCATCGGTCATAAAAAAC 844
.|||||.||||||.|.||.||.||.||.||.||||||...||.|||||||
BL02099___prm 795 GAAAGACGGCGGCTATTTCATCACTTCGGGGATCATCCAGCAGAAAAAAC 844
BSNT_03789___ 845 AAGAAGTAAAAGAAGCACTGGAACAAGCTGGCTTTACCATTGTAGAAATC 894
|.|||||.|||||.|||||||...|||..||||||||.||.||.||..|.
BL02099___prm 845 AGGAAGTCAAAGATGCACTGGTGAAAGAAGGCTTTACGATCGTTGAGGTT 894
BSNT_03789___ 895 CTTTCAATGGAAGATTGGGTCAGCATTATTGCGAAAAAATAA 936
|||||||||||.||.|||||||||||.||.||.|||||||||
BL02099___prm 895 CTTTCAATGGAGGACTGGGTCAGCATCATCGCTAAAAAATAA 936
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