Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03795 and BL02094

See Amino acid alignment / Visit BSNT_03795 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:51
# Commandline: needle
#    -asequence dna-align/BSNT_03795___hrcA.1.5803.seq
#    -bsequence dna-align/BL02094___hrcA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03795___hrcA-BL02094___hrcA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03795___hrcA-BL02094___hrcA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03795___hrcA
# 2: BL02094___hrcA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1051
# Identity:     773/1051 (73.5%)
# Similarity:   773/1051 (73.5%)
# Gaps:          38/1051 ( 3.6%)
# Score: 2772.0
# 
#
#=======================================

BSNT_03795___      1 ATGTTAACAAATCGTCAGCTGCTGATCCTTCAGGTTATAATCAACGATTT     50
                     |||||||||||||||||||||.|.|||.|.||||||||..||||||||||
BL02094___hrc      1 ATGTTAACAAATCGTCAGCTGTTAATCTTGCAGGTTATCGTCAACGATTT     50

BSNT_03795___     51 TATTAAATCGGCACAGCCGGTGGGATCAAGAACTCTTTCGAAAAAAGATG    100
                     .|||...||.||.||||||||.|||||||||||.|||||.|||||.||.|
BL02094___hrc     51 CATTCGTTCAGCTCAGCCGGTAGGATCAAGAACGCTTTCCAAAAAGGAAG    100

BSNT_03795___    101 AAATCACATTTAGCTCTGCAACAATAAGAAACGAGATGGCTGACTTGGAG    150
                     |.||||||||.|||||.|||||.||.||||||||.||||||||||||||.
BL02094___hrc    101 ATATCACATTCAGCTCGGCAACGATCAGAAACGAAATGGCTGACTTGGAA    150

BSNT_03795___    151 GAATTGGGCTTTATTGAAAAAACCCATTCATCCTCAGGACGTGTTCCGTC    200
                     ||..|.||.|||||.|||||||||||.|||||.|||||.||..||||.||
BL02094___hrc    151 GAGCTCGGTTTTATCGAAAAAACCCACTCATCTTCAGGCCGGATTCCTTC    200

BSNT_03795___    201 AGAAAAAGGGTATCGGTACTATGTTGACCATTTGCTGTCACCCGTCAAAC    250
                     .|||||.||.|||||.||.|||||.||.|||.||||.|||||.|..||.|
BL02094___hrc    201 TGAAAAGGGCTATCGCTATTATGTCGATCATCTGCTTTCACCTGGAAAGC    250

BSNT_03795___    251 TGACGAAAAGCGACCTGGACCAAATCCACTCGATCTTCAAAGAGAAAATT    300
                     ||.|.||||..|||.|..||...||.||.|||||.||||||||.|||||.
BL02094___hrc    251 TGTCAAAAACGGACTTAAACATTATTCATTCGATTTTCAAAGAAAAAATC    300

BSNT_03795___    301 TTCGAGCTGGAGAAGACAGTTCAAAAATCAGCGCAAATTTTGTCCGATCT    350
                     ||.||.||.||.||..|.||.||.||.||.||.|||.|..|||||||.||
BL02094___hrc    301 TTTGAACTCGAAAAAGCCGTGCAGAAGTCGGCCCAAGTGCTGTCCGACCT    350

BSNT_03795___    351 GACGAATTACACATCCATCGTACTCGGGCCGAAGCTGAGTGAGAATTACC    400
                     |||.|||||.|||||.||.||.|||||.||||..||||||||.||..|.|
BL02094___hrc    351 GACAAATTATACATCGATTGTCCTCGGTCCGAGACTGAGTGAAAACCATC    400

BSNT_03795___    401 TTAAACAGATTCAAATCATTCCGATTCAGCCTGATATGGCGGTAGCGATT    450
                     |.||||||||.||.||..|.|||||||||||..|.|.|||.||.||.|||
BL02094___hrc    401 TCAAACAGATCCAGATTGTACCGATTCAGCCCAAGAAGGCCGTTGCCATT    450

BSNT_03795___    451 CTCGTTACCAATACGGGGCATGTGGAAAACAAAACGATTAACTTTCCGAC    500
                     ||.||.||.|||||.||.||||||||.||.|||||||||||.||.|||.|
BL02094___hrc    451 CTAGTAACGAATACCGGCCATGTGGAGAATAAAACGATTAATTTCCCGGC    500

BSNT_03795___    501 CAAAATGGATCTGTCTGATATTGAAAAACTGGTAAATATACTGAACGACC    550
                     ..|..|.|||||.||.|||.|.||.||.|||||.||||||.|.||.||.|
BL02094___hrc    501 GGAGGTCGATCTTTCCGATCTCGAGAAGCTGGTGAATATATTAAATGAAC    550

BSNT_03795___    551 GTTTAAGCGGCGTTCCAATGGAT----GAACTGAATGAGCGCATATTTAA    596
                     |..|.||.|||||.||    |||    ||||||||.||..|.||.||.||
BL02094___hrc    551 GCCTTAGAGGCGTGCC----GATCTCAGAACTGAAAGACAGGATTTTCAA    596

BSNT_03795___    597 AGAAGTTGTCATGTACCT-AAGACAGCACATTAAAAACTATGACAATATA    645
                     |||.||||||||.|.|.| |||.| |||||||.||||.||.||.|..||.
BL02094___hrc    597 AGAGGTTGTCATCTTCTTGAAGTC-GCACATTCAAAATTACGATACGATT    645

BSNT_03795___    646 CTCGACGCGCTTCGTTCAAC-CT---TTCAT-TCCACAAATCACATTGAA    690
                     .|..|||||||..|..|||| ||   ||||| |...||||.|     ||.
BL02094___hrc    646 TTGCACGCGCTCGGCGCAACGCTGGATTCATCTGTTCAAACC-----GAC    690

BSNT_03795___    691 AAGTTGTTTTTTGGCGGGAAAATCAATATGCTGAACCAGCCTGAGTTCCA    740
                     ..|.|||||||.|||||.||.||.||.||||||||||||||.||.||.||
BL02094___hrc    691 CGGCTGTTTTTCGGCGGCAAGATTAACATGCTGAACCAGCCCGAATTTCA    740

BSNT_03795___    741 TGATATCACCCGAGTTCGGTCGCTGCTTTCATTAATTGAGAAAGAACAGG    790
                     .|||||...|.||||....|||||..|.||..|.||||||||||||||||
BL02094___hrc    741 CGATATTGACAGAGTGAAATCGCTATTGTCGCTCATTGAGAAAGAACAGG    790

BSNT_03795___    791 ATGTTTTAAAGCTGGTTCAATC--------CCCGCGCACGGGAATTTCGA    832
                     |..||.|...|||..||||.||        ||        ||||||.|.|
BL02094___hrc    791 AGATTCTCCGGCTCTTTCAGTCGACTGAGTCC--------GGAATTACCA    832

BSNT_03795___    833 TTAAAATCGGAAAAGAAAACGACTATGAAGAGATGGAAAATTGCAGTCTG    882
                     |.||||||||.|||||||||||||||||||||||||||||.|||||.|||
BL02094___hrc    833 TCAAAATCGGCAAAGAAAACGACTATGAAGAGATGGAAAACTGCAGCCTG    882

BSNT_03795___    883 ATTACGGCTTCTTATTCCGTAGAC-CAGAAGCAGATCGGCTCAATTGCGA    931
                     |||||.||..|.||..|.||.|.| || ||.|||||||||||.||||||.
BL02094___hrc    883 ATTACCGCAACATACACGGTCGGCTCA-AAACAGATCGGCTCCATTGCGG    931

BSNT_03795___    932 TTATCGGCCCGACCCGCATGAATTATTCCAGGGTTGTCAGCCTGCTTCAG    981
                     |.|||||.|||||.||||||.|.||.|||.|.||.|||.||.||||||||
BL02094___hrc    932 TCATCGGACCGACGCGCATGGACTACTCCCGCGTCGTCGGCTTGCTTCAG    981

BSNT_03795___    982 CATGTGACTTCGGACTTGTCAAAAGCATTAACAAGTCTGTATGATGAATA   1031
                     ||.||..|.||.||||||||||||||..|.||||||.|||||||||..||
BL02094___hrc    982 CACGTATCATCTGACTTGTCAAAAGCGCTGACAAGTTTGTATGATGGGTA   1031

BSNT_03795___   1032 A   1032
                     |
BL02094___hrc   1032 A   1032


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.