Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03816 and BL02081

See Amino acid alignment / Visit BSNT_03816 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:53
# Commandline: needle
#    -asequence dna-align/BSNT_03816___nadD.1.5803.seq
#    -bsequence dna-align/BL02081___nadD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03816___nadD-BL02081___nadD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03816___nadD-BL02081___nadD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03816___nadD
# 2: BL02081___nadD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 593
# Identity:     418/593 (70.5%)
# Similarity:   418/593 (70.5%)
# Gaps:          46/593 ( 7.8%)
# Score: 1475.0
# 
#
#=======================================

BSNT_03816___      1 ATGAAGAAAATCGGAATTTTCGGAGGCACGTTTGACCCTCCGCATAATGG     50
                     ||||.|||||||||.|||||.|||||.||.||.||.||||||||.||.||
BL02081___nad      1 ATGAGGAAAATCGGGATTTTTGGAGGGACATTCGATCCTCCGCACAACGG     50

BSNT_03816___     51 TCACCTCTTAATGGCGAATGAGGTGCTGTACCAGGCGGGGCTTGATGAAA    100
                     .||..|.||||||||.|||||.||.||||||.|...||..||||||||||
BL02081___nad     51 GCATTTATTAATGGCAAATGAAGTCCTGTACAAACTGGATCTTGATGAAA    100

BSNT_03816___    101 TTTGGTTTATGCCTAATCAAATTCCGCCGCATAAACAGAACGAAGACTAT    150
                     |.|||||||||||.||.||||||||||||||||||||.|   ||.|||  
BL02081___nad    101 TCTGGTTTATGCCCAACCAAATTCCGCCGCATAAACAAA---AAAACT--    145

BSNT_03816___    151 ACCG-----AC--AGCTTTCATCGCGTGGAAATGCTAAAGCTTGCAATT-    192
                       ||     ||  ||..|.||..|.||.||||||||.|||||.||.||| 
BL02081___nad    146 --CGTTTTCACTAAGTATGCACAGGGTTGAAATGCTGAAGCTCGCCATTT    193

BSNT_03816___    193 -----------CAATCTAATCCGTCCTTTAAGCTGGAGCTTGTTGAAATG    231
                                |||            |||||.||||||....|.|||.|.
BL02081___nad    194 CGGGGAAAGAGCAA------------TTTAAACTGGAGACGATCGAACTC    231

BSNT_03816___    232 GAAAGAGAAGGACCGTCATATACCTTTGATACCGTTTCTTTACTGAAGCA    281
                     |||||.|||||.||.||.|||||.||||||||||||....|.|||||..|
BL02081___nad    232 GAAAGGGAAGGCCCTTCTTATACATTTGATACCGTTCGCCTGCTGAAAGA    281

BSNT_03816___    282 GCGTTATCCAAATGATCAGCTGTTCTTTATTATCGGCGCTGATATGATTG    331
                     .||.||.||..||.||.||.|.|.|||||||||||||||.||||||.|.|
BL02081___nad    282 CCGATACCCTGATCATGAGTTTTACTTTATTATCGGCGCGGATATGGTGG    331

BSNT_03816___    332 AATATTTGCCGAAATGGTATAAGCTGGACGAGCTGCTGAACCTCATTCAA    381
                     ||||..||||||||||||..||..|.|||.||||..|.|||.|.|||||.
BL02081___nad    332 AATACCTGCCGAAATGGTCAAACATTGACAAGCTTGTCAACATGATTCAG    381

BSNT_03816___    382 TTTATTGGAGTAAAGCGCCCCGGTTTTCATGTTGAAACCCCTTATCCGCT    431
                     |||.|.||.||.|||||.|||||.|||||..||||.||.||.||||||||
BL02081___nad    382 TTTGTCGGGGTGAAGCGGCCCGGCTTTCAAATTGAGACGCCGTATCCGCT    431

BSNT_03816___    432 TCTCTTTGCAGACGTTCCGGAATTTGAGGTATCATCAACTATGATAAGGG    481
                     ..|.||||..||.||.||....|||||.||.||||||.||.||.|.||||
BL02081___nad    432 CGTTTTTGTCGATGTGCCTATTTTTGAAGTGTCATCATCTTTGCTCAGGG    481

BSNT_03816___    482 AACGGTTTAAAA----GCAAGAAGCCCACTGACTACTTAATCCCTGATAA    527
                     |.||..||||||    ||    ||||.||.||.||.|||||.|||||..|
BL02081___nad    482 ACCGCATTAAAAATCGGC----AGCCGACAGATTATTTAATACCTGACGA    527

BSNT_03816___    528 AGTGAAGAAGTATGTAGAGGAGAATGGTTTATATGAATCGTGA    570
                     |||||||...|||||..||||||||.|||||||||||.|||||
BL02081___nad    528 AGTGAAGGTCTATGTGAAGGAGAATCGTTTATATGAAACGTGA    570


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.