Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03577 and BL02061
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:34
# Commandline: needle
# -asequence dna-align/BSNT_03577___bmrR.1.5803.seq
# -bsequence dna-align/BL02061___bmrR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03577___bmrR-BL02061___bmrR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03577___bmrR-BL02061___bmrR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03577___bmrR
# 2: BL02061___bmrR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1065
# Identity: 488/1065 (45.8%)
# Similarity: 488/1065 (45.8%)
# Gaps: 447/1065 (42.0%)
# Score: 974.5
#
#
#=======================================
BSNT_03577___ 1 ATGAAGGAATCGTATTACTCAATTGGGGAAGTA-----TCAAAACTGGCA 45
||||||||| ||||..|||||.||||||..| ||.||| .
BL02061___bmr 1 ATGAAGGAA---TATTTTTCAATCGGGGAAACAGCCCGTCTAAA-----T 42
BSNT_03577___ 46 AACGTGTCGATAAAAGCGCTCCGTTATTACGATAAAATTG--ATTTATTT 93
|||.|.||.||..||.|..|.||.|||||.|||||.||.| || |||
BL02061___bmr 43 AACATTTCCATTCAAACATTGCGCTATTATGATAAGATCGGAAT---TTT 89
BSNT_03577___ 94 AAACCCGCCT--ACGT--CGACCCGGATACCAGCTACCGCTATTA----- 134
.|| |||| |.|| .||||.|||||.|.||||.||.|||||
BL02061___bmr 90 CAA---GCCTCAATGTACAGACCGGGATAACGGCTATCGATATTACCATG 136
BSNT_03577___ 135 -TACAGATTCTCAGCTCATTCATCTGGATTTGATCAAATCAT-TGAAATA 182
||.| |||.||.||.||.|||||.|.||.|||| || |.||||
BL02061___bmr 137 TTAAA------CAGTTCTTTTATTTGGATATTATAAAAT-ATCTCAAAT- 178
BSNT_03577___ 183 TATCGGCACACCTTTAGAGGAGATGAAAAAAGCACAGGACTTAGAGATGG 232
||.|| ||||.|| ||| |||
BL02061___bmr 179 ----------CCATT-----------AAAACGC------CTT-----TGG 196
BSNT_03577___ 233 AAGAACTGTTTGCTTTTTATACAGAGCAGGAGAGGCAAATCAGGGAGAAA 282
||||| ||..||.|| |
BL02061___bmr 197 AAGAA-------------ATTAAGCGC----------------------A 211
BSNT_03577___ 283 TTAGACTTTTT-------ATCAGC------ACTGGAGCAAACCATTTCAT 319
||| |.| |||.|| ||||..||||||| |||| |
BL02061___bmr 212 TTA-----TCTCACATACATCTGCCCCTGAACTGATGCAAACC-TTTC-T 254
BSNT_03577___ 320 TG------GTGAAAA--------AGCGGATGAAACGGCAGATGGAATATC 355
|| ..||||| |||| |||| ||||||.|.|
BL02061___bmr 255 TGAGGAGCAAGAAAACGTTATTGAGCG--TGAA-------ATGGAAAAAC 295
BSNT_03577___ 356 CCGCGCTCGGTG--AGGTGTTTGTTTTAGATGAAGAAGAAATACGGATCA 403
.||..| ||| |||...|||.||.| ||||||||| |||.||
BL02061___bmr 296 TCGAAC---GTGCCAGGCAATTGCTTCA----AAGAAGAAA---GGACCA 335
BSNT_03577___ 404 --TTCA----------GACAGAGGC-----------AGAAGGAATCGGGC 430
|||| ||.|.|.|| |||||| ||.||
BL02061___bmr 336 GCTTCATGAACAATTGGAGATACGCGCTAAAAAAGAAGAAGG--TCTGG- 382
BSNT_03577___ 431 CTGAAAACGTGCTC---------AATGCCTCCTACAGCAAATTAAAA--- 468
||.| ||.|| ||.||| |.|.||..||||||
BL02061___bmr 383 -TGTA----TGTTCGGCATATAGAAGGCC----AAACCATTTTAAAAGCA 423
BSNT_03577___ 469 ----------AAATTTATC-----GAGTCAGCAGA--TGGATTTACGAAC 501
||.|..||| ||...|.|||| ||.|||..||||.
BL02061___bmr 424 GCGACACCTCAAGTGAATCCTCATGACCAATCAGATTTGTATTACCGAAA 473
BSNT_03577___ 502 AATAGCTACGGCGCT--------------------------ACTTTCTCT 525
|.|.|||..||..|| |||
BL02061___bmr 474 ACTGGCTGAGGTCCTGGAAGAAAGAGGAGATATGGTCGATAACT------ 517
BSNT_03577___ 526 TTTCAGCCCTACACCAGCATTGATGAAATGACTTACCGTCATATTTTCAC 575
||| |||.|.|||.|| ||..|||.|.
BL02061___bmr 518 ------------------ATT-ATGGACTGATTT------ATGATTTAAA 542
BSNT_03577___ 576 GCCTGTATTGACGAATAAA--CAG---------ATTTCATCAAT-----T 609
|||| ||| |.||| ||| |||.||.||.| |
BL02061___bmr 543 GCCT-TAT------AAAAATTCAGGTGACATTTATTGCAACAGTGTTTAT 585
BSNT_03577___ 610 ACGCCGGAT-----ATGGA----------------AATCACA-------- 630
|||.| ||| ||||| ||..|||
BL02061___bmr 586 ACGAC-GATTTACGATGGAGCAAAGATAGATACAGAAGAACAAAATATTG 634
BSNT_03577___ 631 --------ACGATCCC------TAAAGGGAGGTATGCGTGTATCGCGTAT 666
|||||||| |.|| ||||.||||||..|.|.|
BL02061___bmr 635 GGATGGATACGATCCCATCCGGTGAA------TATGTGTGTATTTCATTT 678
BSNT_03577___ 667 AATTTTTCGCCTGAAC--ATTATTTTCTCAACTTACAGAAGCTTATCAAG 714
.| ||.|.|.|.||| |||||||| ||| ||| ||||||
BL02061___bmr 679 GA--TTGCTCTTCAACAAATTATTTT-TCA---TAC-------TATCAA- 714
BSNT_03577___ 715 TATATCGCAGACCG--CCAATT------AACAGTTGTCAGT------GAT 750
|.||.| |||.|| |||...||.||.| |||
BL02061___bmr 715 --------AAACTGTACCATTTTATTGAAACTCATGGCATTCAAACGGAT 756
BSNT_03577___ 751 ------GTTTA-CGAGTTAAT----CATACCG-----ATTCATTACTCCC 784
||.|| |.||||..| ||.||.| |.||||||
BL02061___bmr 757 GGAAAAGTATATCAAGTTTCTTTTCCAAACAGCTATAACTCATTA----- 801
BSNT_03577___ 785 CGAAAAAACAAGA---------AGAATATC---GTGTCGAAATGAAAATA 822
|||.||.|||| ||||| || ||| .||||||
BL02061___bmr 802 --AAAGAAGAAGACTTCCTCACAGAAT-TCAGAGTG-----CTGAAAA-- 841
BSNT_03577___ 823 CGAATCGCTGAATAA 837
|||||
BL02061___bmr 842 ----------AATAA 846
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