Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03993 and BL02040
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:01
# Commandline: needle
# -asequence dna-align/BSNT_03993___yrvO.1.5803.seq
# -bsequence dna-align/BL02040___yrvO.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03993___yrvO-BL02040___yrvO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03993___yrvO-BL02040___yrvO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03993___yrvO
# 2: BL02040___yrvO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1194
# Identity: 841/1194 (70.4%)
# Similarity: 841/1194 (70.4%)
# Gaps: 108/1194 ( 9.0%)
# Score: 2886.0
#
#
#=======================================
BSNT_03993___ 1 ATGGAACGGATTTATTTAGATCATGCCGCAACGTCTCCGATGGATGAGCG 50
||||||||||||||.|||||.|||||.||.||.|||||||..||....||
BL02040___yrv 1 ATGGAACGGATTTACTTAGACCATGCAGCGACTTCTCCGACTGACCCCCG 50
BSNT_03993___ 51 CGTGCTGGAAAAAATGATACCGCACTTCTCCGGCAGTTTCGGTAATCCCT 100
.||..|||||||||||.|.||..||||..|.|..|..|||||.||.||.|
BL02040___yrv 51 GGTAGTGGAAAAAATGCTGCCTTACTTAACGGAAAACTTCGGAAACCCTT 100
BSNT_03993___ 101 CCAGTATTCATTCATTTGGCAGAGA-ATCTCGAAAATGGGTGGATGA-AG 148
|.||.||||||||.|||||.||.|| |.| ||.||||||.| ||| ||
BL02040___yrv 101 CAAGCATTCATTCCTTTGGAAGGGAGAGC-CGGAAATGGCT---TGACAG 146
BSNT_03993___ 149 CA--AGAGCGCAGATCG--CAGCAGAAATCGGAGCGGCAGAGC-AGGAGA 193
|| ||.|.||.||||| ||| ||||||||||| |||...| |.||.|
BL02040___yrv 147 CACGAGGGAGCTGATCGCTCAG--GAAATCGGAGC-GCATCCCAATGAAA 193
BSNT_03993___ 194 TCATTTTTACAAGCGGGGGAACGGAAGCTGATAACTTGGCGATCATGGGA 243
||.|||||||.|||||||||||.|||||.||.||..|||||||..|.|||
BL02040___yrv 194 TCGTTTTTACGAGCGGGGGAACCGAAGCCGACAATATGGCGATTCTCGGA 243
BSNT_03993___ 244 ACCGCACTTGCAAGAAAAGATCTTGGCAGACATATCATCACAACAAAAAT 293
|.|||.||.||.|||.|..|.|..|||.|.||.||||||||.|||||.||
BL02040___yrv 244 AGCGCGCTGGCGAGAGAGAAGCAGGGCCGCCACATCATCACGACAAAGAT 293
BSNT_03993___ 294 TGAGCATCACGCCGTGCTTCACACATGTGAAAAA--CTTGAGGAAGACGG 341
.|||||.||.|||||.||.||.|| |||.||.| |||||.|||...||
BL02040___yrv 294 CGAGCACCATGCCGTTCTGCATAC--GTGCAACAGGCTTGAAGAAATGGG 341
BSNT_03993___ 342 ATTTGACATAACGTATCTGGACGTTGACCAAAATGGAAGAGTCAGTGCAA 391
|||||||.|.||.|||||.|||||.|||.|||..||||||.||...||..
BL02040___yrv 342 ATTTGACGTCACATATCTAGACGTCGACGAAAGCGGAAGAATCTCCGCCG 391
BSNT_03993___ 392 AACAGGTGAAAGAAGCACTGCGTGATGATACAATCCTTGTGACAGTGATG 441
|.|||||||||||.||||||||.||.|||||.|||||.|||||.||.|||
BL02040___yrv 392 AGCAGGTGAAAGACGCACTGCGAGACGATACCATCCTGGTGACGGTTATG 441
BSNT_03993___ 442 TATGGAAATAATGAAGTTGGAACAGTGCAGCCGATCGAAGAAATCGGTGA 491
|||||.||.||||||||.|||||..|.||||||||.||.||.|||||.||
BL02040___yrv 442 TATGGGAACAATGAAGTGGGAACGATTCAGCCGATAGATGAGATCGGCGA 491
BSNT_03993___ 492 GCTGTTAAAGGAACA--CAAAGCTTATTTTCATACCGATGCTGTTCAGGC 539
.|||.|||||||.|| |...||| .||||||||.|||||.|||||.||
BL02040___yrv 492 TCTGCTAAAGGACCATCCCGCGCT--GTTTCATACAGATGCGGTTCAAGC 539
BSNT_03993___ 540 ATTCGGGTTGCTGCCAATTGATGTGAAAAACAGCCATATTGACCTTCTGT 589
.|||||.||..||||.|||||||||.||||.||||.|||.||..|..|||
BL02040___yrv 540 CTTCGGTTTTTTGCCGATTGATGTGCAAAAAAGCCGTATCGATATGATGT 589
BSNT_03993___ 590 CTGTTTCCGGGCACAAGCTCAACGGGCCAAAAGGGACAGGCTTTTTATAT 639
||||.|||||.||.||.||.||||||||.||.||.||||||||||||||.
BL02040___yrv 590 CTGTCTCCGGACATAAACTTAACGGGCCGAAGGGAACAGGCTTTTTATAC 639
BSNT_03993___ 640 G-CTAGTAAAGATGTGAAGCTTTCA--CCGCTTTTATTCGGAGGAGAGCA 686
| |.|..||| |.||||||| ||| |.||||.|.||||||||||||||
BL02040___yrv 640 GTCAACGAAA-ACGTGAAGC--TCAGCCAGCTTCTTTTCGGAGGAGAGCA 686
BSNT_03993___ 687 AGAAAGAAAACGCCGTGCCGGAACCGAAAATGTTCCAGGCATTGTCGGGC 736
.|||.|.||||||||.||.|||||.||||||||.||.||.||.|..||||
BL02040___yrv 687 GGAACGCAAACGCCGGGCGGGAACGGAAAATGTCCCGGGAATCGCGGGGC 736
BSNT_03993___ 737 TGAAAGAAGCGATCAAGCTG------TCAAGTGAAGAACGGGACGAAAAA 780
| ||.|.|||||| || .||||.||..|||
BL02040___yrv 737 T--------CGGTGAAGCTGTTTTGCTC---------TCGGGTCGGGAAA 769
BSNT_03993___ 781 AACGAGAAGTATCAATC---------------GTTTAAAGCAATCTTTGC 815
|||||| |..|||| ||||||||..|||.|..|
BL02040___yrv 770 ---GAGAAG-AAAAATCGGATCTTTACCGCCGGTTTAAAGACATCATCAC 815
BSNT_03993___ 816 CGACACGCTTAGAGATGCAGGTGTGGCATTCGAGATCAACGGGGACAAAG 865
|...|||||...||..|.|||.||..|||||||..|.|||||...||...
BL02040___yrv 816 CCGTACGCTGGAAGCAGAAGGCGTCTCATTCGATGTGAACGGCAGCAGGC 865
BSNT_03993___ 866 AGCATAGTCTGCCGCATGTTCTGAATCTTTATTTCCCCGGTGTGTCAGTG 915
.|||.||||||||||||.||.|||||||.||||||||.||.||.||.||.
BL02040___yrv 866 GGCACAGTCTGCCGCATATTTTGAATCTGTATTTCCCGGGAGTATCTGTT 915
BSNT_03993___ 916 GAAGCGCTGCTGGTCAATCTTGATATGGCGGGTGTCGCTGTCTCCAGCGG 965
|||.|||||||.||||||||.|||||||||||..||||.||.||.|||||
BL02040___yrv 916 GAATCGCTGCTCGTCAATCTCGATATGGCGGGAATCGCAGTATCGAGCGG 965
BSNT_03993___ 966 TTCAGCGTGTACGGCCGGTTCAGTCCTGCCGTCACATGTTCTGACTGCTA 1015
.||.|||||.||||||||.||.||.||.|||||.||||||||..|.||.|
BL02040___yrv 966 ATCGGCGTGCACGGCCGGGTCTGTGCTTCCGTCTCATGTTCTCTCCGCCA 1015
BSNT_03993___ 1016 TGTTCGGCGAAGAGAG-TGACCGGCTGACGTCCTCTATTCGAATCAGCTT 1064
||||.|||||||| || .||.|||||.|||||.||..|.||.||||||||
BL02040___yrv 1016 TGTTTGGCGAAGA-AGACGATCGGCTCACGTCATCCGTCCGGATCAGCTT 1064
BSNT_03993___ 1065 CGGCCTCGGCAATAC---------GGCTGAGC---------AAGTGAAAA 1096
||||.|.|||||||| ||.||||| ||| ||
BL02040___yrv 1065 CGGCTTTGGCAATACAGAGGAACAGGTTGAGCGCGCCGCGAAAG----AA 1110
BSNT_03993___ 1097 CTGCTGCCAAACATGTGGCCGACGTTGTCAAACGGCTGACATAA 1140
|| |||.||| |||||.||.||.|||.|||||
BL02040___yrv 1111 CT--TGCTAAA------------GTTGTTAAGCGTCTGTCATAA 1140
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