Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03991 and BL02038
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:01
# Commandline: needle
# -asequence dna-align/BSNT_03991___yrrB.1.5803.seq
# -bsequence dna-align/BL02038___yrrB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03991___yrrB-BL02038___yrrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03991___yrrB-BL02038___yrrB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03991___yrrB
# 2: BL02038___yrrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 678
# Identity: 486/678 (71.7%)
# Similarity: 486/678 (71.7%)
# Gaps: 54/678 ( 8.0%)
# Score: 1751.5
#
#
#=======================================
BSNT_03991___ 1 GTGGATTATAATCAACTCGGTATAGAGGCGATGCAGGAAGGCGATTACGA 50
.|||||||.||||||.|.||.|||||.||.|||||..|||||||.|..||
BL02038___yrr 1 TTGGATTACAATCAAATTGGAATAGATGCAATGCAAAAAGGCGACTTTGA 50
BSNT_03991___ 51 GAAAGCGGCAGAGGCATTTACAAAAGCGATTGAAGAAAATAAAGAAGACG 100
.|||||.||.||.||.||||||||.||.|||||.|||||.|..|.|||..
BL02038___yrr 51 AAAAGCCGCTGAAGCCTTTACAAAGGCAATTGATGAAAACAGCGGAGATC 100
BSNT_03991___ 101 CGATTCCGTATATCAATTTTGCCAACCTGCTTTCATCCGTAAACGAGCTG 150
||.|.||.||||||||.|||||||||||||||||..|.||...|||..||
BL02038___yrr 101 CGGTGCCTTATATCAACTTTGCCAACCTGCTTTCTGCAGTCGGCGAATTG 150
BSNT_03991___ 151 GAACGTGCGCTTGCGTTTTATGATAAAGCG-----CTTGAATTAGA---C 192
||..|.||||||..||||||.||.|..||| .|||.||.||| |
BL02038___yrr 151 GACAGGGCGCTTAAGTTTTACGACAGGGCGGCTGCTTTGGATGAGAAAGC 200
BSNT_03991___ 193 AGTAGCGCAGCCACTGCTTATTATGGAGCAGGAAATGTCTATGTTGTAAA 242
||.|||| |||||||||||||||||.|||||||||||..|.||
BL02038___yrr 201 AGGAGCG--------GCTTATTATGGAGCAGGGAATGTCTATGTCATGAA 242
BSNT_03991___ 243 AGAAATGTACAAAGAAGCGAAAGACATGTTTGAAAAAGCGCTTCGTGCGG 292
|||...|||..||||||||||.||||||||.||||||||||.|||..|||
BL02038___yrr 243 AGAGCGGTATCAAGAAGCGAAGGACATGTTCGAAAAAGCGCATCGGACGG 292
BSNT_03991___ 293 GGATGGAAAACGGCGACCTATTTTACATGCTCGGAACGGTACTTGTCAAG 342
|.|||||||||.|||||.|||.|||.|||||||||||....||.||.|||
BL02038___yrr 293 GCATGGAAAACAGCGACTTATATTATATGCTCGGAACCACGCTCGTGAAG 342
BSNT_03991___ 343 CTCGAACAGCCTAAGCTTGCACTGCCATATTTACAAAGAGCGGTCGAACT 392
||.||.|||||.|||||.|||.||||.|||||.||||||||.|.|||.||
BL02038___yrr 343 CTTGAGCAGCCGAAGCTCGCAATGCCGTATTTGCAAAGAGCCGCCGAGCT 392
BSNT_03991___ 393 GAATGAAAACGATACG------GAAGCGCGTTTTCAATTCGGGATGTGCT 436
| ||||||.|| |||||.||||||||.|.||.|||||||.
BL02038___yrr 393 G------AACGATGCGGATGTCGAAGCCCGTTTTCATTACGCGATGTGCC 436
BSNT_03991___ 437 TAGCCAACGAGGGCATGCTGGACGAAGCGCTCAGCCAATTCGCAGCTGTG 486
|.|||||.||.||.|||||||||||||||.|||...||||..||..|||.
BL02038___yrr 437 TTGCCAATGAAGGGATGCTGGACGAAGCGATCACGGAATTTTCAAATGTA 486
BSNT_03991___ 487 ACAGAGCAAGACCCGGGGCATGCAGATGCATTTTATAATGCCGGTGTCGC 536
||.||||..||||||...|||||.|||||||||||||||...||.||.||
BL02038___yrr 487 ACGGAGCGCGACCCGTCCCATGCCGATGCATTTTATAATTTAGGCGTTGC 536
BSNT_03991___ 537 TTATGCTTATAAAGAAAACCGAGAAAA-AGCGCTTGAAATGCTGGACAAG 585
.|||||.|.|||.|||.|.|| ||||| ||||||.||.||||||.|||||
BL02038___yrr 537 CTATGCGTTTAAGGAAGATCG-GAAAACAGCGCTCGACATGCTGAACAAG 585
BSNT_03991___ 586 GCAATTGATATCCAGCCAGATCATATGCT-----TGCGCTTCATGC---- 626
||..|.||.||.|||||.||||||||||| |.|||..||.||
BL02038___yrr 586 GCGCTGGACATTCAGCCGGATCATATGCTCAGCATTCGCGCCAAGCAGCT 635
BSNT_03991___ 627 --TA-AAAAACTGATTGATCCATCATAA 651
|| ||.|| |.||||
BL02038___yrr 636 TTTAGAAGAA--GCTTGA---------- 651
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