Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03971 and BL02028
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:00
# Commandline: needle
# -asequence dna-align/BSNT_03971___yrrM.1.5803.seq
# -bsequence dna-align/BL02028___yrrM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03971___yrrM-BL02028___yrrM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03971___yrrM-BL02028___yrrM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03971___yrrM
# 2: BL02028___yrrM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 697
# Identity: 466/697 (66.9%)
# Similarity: 466/697 (66.9%)
# Gaps: 77/697 (11.0%)
# Score: 1471.5
#
#
#=======================================
BSNT_03971___ 1 GTGACTGACCGGTATGAACA--AATAAATGA----CTATAT--AGAAGCA 42
|||| .|..||.||| ||.||.||| ||||.| |.||||
BL02028___yrr 1 GTGA------AGATTGGACACGAAGAATTGACCGGCTATCTTGAAAAGC- 43
BSNT_03971___ 43 TTATTAAAGCCTCGGCCGGATAACGTGAAGAAGCTTGAAGCATATGCAGA 92
|..|||||||.|||||||.|.|..|.|.|||.||.||.||.|||||.||
BL02028___yrr 44 -TGCTAAAGCCGCGGCCGGCTGAAATTATGAAACTGGAGGCCTATGCCGA 92
BSNT_03971___ 93 AGAACATCATGTCCCGATTATGGAAAAAGCGGGCATGGAGGTGCTGCTTC 142
|||.|||...||.||.|||||||||....|.||.||.||.|||||.||.|
BL02028___yrr 93 AGAGCATGGCGTGCCCATTATGGAACCGACAGGAATCGAAGTGCTCCTGC 142
BSNT_03971___ 143 AAATTTTGTCTGTGAAACAGCCGAAAAAAATACTAGAAATCGGAACGGCC 192
|..||.|.||..|.|||.|.|||||||||||.||.||||||||.||.|||
BL02028___yrr 143 AGCTTCTTTCATTCAAAAATCCGAAAAAAATTCTTGAAATCGGTACCGCC 192
BSNT_03971___ 193 ATTGGTTATTCAGCCATTCGGATGGCGCTGGAGCTGCCGTCT-------G 235
||.||.|||||.||.|||||||||||||| |||| || |
BL02028___yrr 193 ATCGGCTATTCGGCGATTCGGATGGCGCT-----TGCC--CTTCCCGAAG 235
BSNT_03971___ 236 CTGAAATATATACAATTGAACGCAATGAGAAACGGCATGAAGAAGCGGTA 285
|.||.||.|.||||||.||.|||.|||||.|..||.||...||||||.|.
BL02028___yrr 236 CCGAGATTTTTACAATCGAGCGCGATGAGGACAGGTATCGGGAAGCGCTG 285
BSNT_03971___ 286 AACAATATCAAGGAATTTCAGCTTGATGACCGGATTCATGTTTTTTACGG 335
||.||.|||..|..|||.||||||||..||.|.|||||.||.||.|.|||
BL02028___yrr 286 AAAAACATCCGGTCATTCCAGCTTGAAAACAGAATTCACGTGTTCTTCGG 335
BSNT_03971___ 336 AGATGCGCT---TGAATTAGCCGACGCCGTTC-----ATGTAACCGCGCC 377
.|||||||| .||.| |.|||.|||||| ||| ||.||
BL02028___yrr 336 CGATGCGCTCAGCGAGT---CTGACCCCGTTCAATCGATG-----GCTCC 377
BSNT_03971___ 378 TTACGATGTCATTTTTATTGACGCTGCAAAAGGTCAGTATCAAAACTTTT 427
.||.||||...|.|||||.||.||.||||||||.||||||||.|| .|||
BL02028___yrr 378 CTATGATGCGCTGTTTATCGATGCCGCAAAAGGCCAGTATCAGAA-GTTT 426
BSNT_03971___ 428 TTCA-TTTATATGAACCGATGCTTTCACCG--GACGGGGTGATTATAACA 474
|||| |.||||||||...|||||| .||| |||||..|.|||.|.||.
BL02028___yrr 427 TTCAGTATATATGAAAAAATGCTT--GCCGATGACGGCATCATTTTTACG 474
BSNT_03971___ 475 GACAACGTGCTGTTTAAAGGTCTGGTGGCAGAGGATTACAGCAAAAT-AG 523
|||||.||.||.||.|||||.||.||.|||...||.||| ||| ||
BL02028___yrr 475 GACAATGTCCTTTTCAAAGGCCTTGTCGCATCAGAATAC-----AATCAG 519
BSNT_03971___ 524 AACCGAAGAGAAGGCGC------AGGCTTGTAGCAAAAATTGATGAATAT 567
|.|||| ||.|.|||| |.|||||||.|.|||||.|||.|.||.
BL02028___yrr 520 -ATCGAA-AGCAAGCGCATCAAAAAGCTTGTATCGAAAATAGATCATTAC 567
BSNT_03971___ 568 AATCATTGGCTGATGAATCATCCGGATTATCAAACTGCGATTATTCCTGT 617
|||||||||||||||.|.|||||.||.||.||.||.|||||..|.|||||
BL02028___yrr 568 AATCATTGGCTGATGGAGCATCCTGACTACCACACGGCGATCCTGCCTGT 617
BSNT_03971___ 618 CGGGGACGGACTTGCGATTAGTAAAAAGAAGAGGTGA---------- 654
.||.||||||.|.||..|.|||.|||| |||||||||
BL02028___yrr 618 GGGCGACGGATTGGCCGTCAGTCAAAA-AAGAGGTGAACGGATATGA 663
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