Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03963 and BL02022
See
Amino acid alignment /
Visit
BSNT_03963 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:59
# Commandline: needle
# -asequence dna-align/BSNT_03963___yrrS.1.5803.seq
# -bsequence dna-align/BL02022___yrrS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03963___yrrS-BL02022___yrrS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03963___yrrS-BL02022___yrrS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03963___yrrS
# 2: BL02022___yrrS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 749
# Identity: 502/749 (67.0%)
# Similarity: 502/749 (67.0%)
# Gaps: 109/749 (14.6%)
# Score: 1647.0
#
#
#=======================================
BSNT_03963___ 1 TTGAGC--AATAA-TCAATCTCGTTATGAAAATCGTGATAAACGCAGAAA 47
|||||| ||.|| ..|||||||||.|||||||||||||||.|||||.||
BL02022___yrr 1 TTGAGCGAAACAAGGGAATCTCGTTTTGAAAATCGTGATAAGCGCAGGAA 50
BSNT_03963___ 48 AGCCAATTTAGTGCTTAACATTTTAATCGCAATCGTATCCATACTAATTG 97
|||.|||.|.|||||||||||||||||.|..|||||||...||.||||.|
BL02022___yrr 51 AGCGAATCTTGTGCTTAACATTTTAATAGGCATCGTATTGGTATTAATCG 100
BSNT_03963___ 98 TCGTAGTAG-CAGCGAATCTCTTCATTAACAGTCCTTCT-----AGCA-- 139
|.||.||.| |||| |.|||..|.||.|||||||| ||||
BL02022___yrr 101 TTGTCGTTGCCAGC-AGTCTGATGATGAACAGTCC----GAAGGAGCAGG 145
BSNT_03963___ 140 ------AAGATGTC---AGCAAGGATTCTGAAACGGCGCAAAAACAGGAA 180
|||||||| |..||.|||||||||..|.|| ||| |||
BL02022___yrr 146 CGCAGCAAGATGTCTCGAAAAACGATTCTGAACAGACG-----ACA-GAA 189
BSNT_03963___ 181 TCTCCGGCTTCAGGAAAGACGGAAAAGAAATCGGATGAGGATATAAAAGA 230
.|.||.|||||.|..||.|.|.||.|.|.|||.|||||.|||.|||||||
BL02022___yrr 190 GCGCCTGCTTCCGACAATAAGAAACAAACATCTGATGAAGATGTAAAAGA 239
BSNT_03963___ 231 -CAGCAAGAAAGATACATCTGACAGCGAAAAG-GATTCTG-------AGA 271
.||.|..||.|| ||||| ||||||| |||
BL02022___yrr 240 TGAGGACAAAGGA--------------AAAAGCGATTCTGCCGATAAAGA 275
BSNT_03963___ 272 AGTC-----TTCTGACTCTGATTCCAA----AAAAGATGATTCTTCTTCT 312
||.| |||.|||||.|| ||| ||| ||.|||.||||.
BL02022___yrr 276 AGACAGCGATTCCGACTCAGA---CAAGGATAAA----GAATCTGCTTCA 318
BSNT_03963___ 313 AAAAAGGATGATTCTGATTCAGATTCAAGCTCAGATTCAGCCAGTGATGG 362
.|..|||| || |.||||..||||| ||||..
BL02022___yrr 319 GACGAGGA-----------CA-AGTCAACATCAGA---------TGATCC 347
BSNT_03963___ 363 GCTTAAAGATGCAAAAGTAACAGAAGGCGGCTCATCGAGCG---ATGTGG 409
|.||.|||..||..||||.|||||||||||.||| |||| ||||.|
BL02022___yrr 348 GTTTGAAGGAGCCGAAGTGACAGAAGGCGGTTCA---AGCGCCAATGTTG 394
BSNT_03963___ 410 AAAAAACGTATGA-AAATCCTGACTGGAAAGCAGTCGG-----AACTGAG 453
|||||||| ||.| .||||||||||||.|..|.||||| |||.|||
BL02022___yrr 395 AAAAAACG-ATCATCAATCCTGACTGGGAGCCTGTCGGCACACAACAGAG 443
BSNT_03963___ 454 CAAACAGGCGAGCATGCCGCTACTTATGATTCAAGCTCGCAAGACTGGGC 503
| ||..|||||.||||.||.||||||||....||.|||||||||..
BL02022___yrr 444 C-----GGACAGCATACCGCAACATATGATTCCTCTTCACAAGACTGGAA 488
BSNT_03963___ 504 TGAGATGCTGAAAGCCATTTCATACGCAACTGGTGTCTCAACAGATAACA 553
.||.|||||..|||||||||||||.||.||.||.||.||.|..|||||||
BL02022___yrr 489 GGAAATGCTTGAAGCCATTTCATATGCGACAGGGGTTTCTAAGGATAACA 538
BSNT_03963___ 554 TGACGGTGCTCTGGCTTGGAAATAACGGCAGCCCTCAGGATGCCAAAGGC 603
||||||||.|||||||.|||||.|||||||||||.||.|||||.|||||.
BL02022___yrr 539 TGACGGTGATCTGGCTCGGAAACAACGGCAGCCCGCAAGATGCGAAAGGA 588
BSNT_03963___ 604 AAGATTTTGGACAAGGCGACTGGGAATAAATATCAAGTCACGATTACATG 653
|..|||..||..||||..|||||....|||||.||.||..|.|||||.||
BL02022___yrr 589 ACCATTCGGGCGAAGGACACTGGCGTCAAATACCAGGTAGCCATTACTTG 638
BSNT_03963___ 654 GGTCGATGAAAAAGGCTGGAAGCCGACAAAAGTAGAAAAGCTAAAATAA 702
|||.||.|.||||||||||||||||||||||||.|||.|..|.||||||
BL02022___yrr 639 GGTTGACGGAAAAGGCTGGAAGCCGACAAAAGTTGAACAATTGAAATAA 687
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.