Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03961 and BL02021
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:59
# Commandline: needle
# -asequence dna-align/BSNT_03961___yrrT.1.5803.seq
# -bsequence dna-align/BL02021___yrrT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03961___yrrT-BL02021___yrrT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03961___yrrT-BL02021___yrrT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03961___yrrT
# 2: BL02021___yrrT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 707
# Identity: 437/707 (61.8%)
# Similarity: 437/707 (61.8%)
# Gaps: 130/707 (18.4%)
# Score: 1170.5
#
#
#=======================================
BSNT_03961___ 1 ATGGGACGTGAATTTATCCCTCTCTTTGAAGATTGGGCAGCAA--CTTAT 48
||||||.|.||.||.||.|||.|.|||||..|.|||||| || |||||
BL02021___yrr 1 ATGGGAAGAGAGTTCATTCCTTTATTTGAGAACTGGGCA--AATTCTTAT 48
BSNT_03961___ 49 GACCAAACAGTACAAGGTT----TAGATATTCAGTATAAAGAAGCGTTCA 94
||..|.|||||| ||| ..|||.||||.||.|||||||.|||..
BL02021___yrr 49 GATGATACAGTA----GTTGGCCGCGATCTTCAATACAAAGAAGTGTTTC 94
BSNT_03961___ 95 GAGGCTATGA--TCATATCCTTGATGCCATCGTCAGCAAATCTGGAACGC 142
|.|.|||.|| .|||.| |.||||...||||||||...||.|| ||
BL02021___yrr 95 GCGACTACGACGGCATTT--TGGATGATGTCGTCAGCCGCTCGGG---GC 139
BSNT_03961___ 143 AT---GTGTTAGAATTTGGCCCTGGGACAGGGAATTTGACGGCTAAGCTG 189
|| ||..|.|||||.|||...||.|||||.|||.||||.||.||..||
BL02021___yrr 140 ATAAAGTTCTTGAATTCGGCGTCGGCACAGGCAATCTGACTGCAAAATTG 189
BSNT_03961___ 190 CTCGATGCAGGCAAA-------AC---TGTATTTGGAATCGAACCTTCTC 229
||.|..||.|| ||| || |||| ||.|||||..
BL02021___yrr 190 CTGGCGGCCGG-AAAGGCAGTCACCGGTGTA---------GAGCCTTCAA 229
BSNT_03961___ 230 CAGCAATG-CGTAAACTGGCTTCTGA---CAAGCTTTCAGGCAGGTCGGA 275
.|||.||| .|.|||.|| |.|| .||||| ||.|| .||
BL02021___yrr 230 AAGCGATGAGGGAAATTG----CCGAGGCAAAGCT-----GCCGG--AGA 268
BSNT_03961___ 276 A-------ATCGTTGATGGAGAC-TTCCTGACATTCCCTGAGCCGCCATT 317
| ||||||||.|||||| ||..|||| ||.||.||.||.||.||
BL02021___yrr 269 ATGCAGTGATCGTTGACGGAGACTTTATTGAC-TTTCCGGACCCTCCGTT 317
BSNT_03961___ 318 TCAGGCTGATACAATTGTCAGTTCATATGCTTTTCATCATTTGACTGACG 367
|....|.||.||.|||||||||||.|||||.|||||.|||.||||..|||
BL02021___yrr 318 TTCTCCCGACACGATTGTCAGTTCTTATGCGTTTCACCATCTGACAAACG 367
BSNT_03961___ 368 AAGAAAAGCGGGCTGCCATAAAGCAATATGG-CAAATACCTTC----ACT 412
||||.|||||||..||..|.||||.|||||| .||||.| || |
BL02021___yrr 368 AAGAGAAGCGGGAAGCTGTGAAGCGATATGGAAAAATGC--TCGGGAA-- 413
BSNT_03961___ 413 TGCATGATAAAATAGTGTTTGCCGATACCGTCTTTGAAG-ATGCGCAAGC 461
|||||.|||||||||||||||.||||||||| ||.||| ||..|.||||
BL02021___yrr 414 -GCATGGTAAAATAGTGTTTGCTGATACCGTC-TTCAAGAATCGGGAAGC 461
BSNT_03961___ 462 -------------GTATCAAAAGGCTATCGATAAAGCCCG---TTCT-CA 494
|| |.||||.||.|..||.|| || |||| ||
BL02021___yrr 462 CTTCTCTGCCGCTGT-TAAAAAAGCGAAGGAAAA----CGGGTTTCTGCA 506
BSNT_03961___ 495 A--GGCTTTTATCAGCTTGCAAATGATTTAGAGACAGAGCATTATCCTAC 542
| ||| |.|| ||..|.||.||.||.||||||||.||
BL02021___yrr 507 ATTGGC------------GGAA--GACCTTGAAACGGAACATTATCCGAC 542
BSNT_03961___ 543 -ATT--GGATGCGTTGAAAGAAATGTTTACAGCTGAAGGTTTTGCAGT-- 587
||| ||| |.||.||...||.|||||..|.|||..||| ||||
BL02021___yrr 543 GATTTCGGA---GATGGAAACGATCTTTACCTCAGAACATTT--CAGTAT 587
BSNT_03961___ 588 --CCGATTCACTCAGCAAAACGACTTCGTGTGGATAATGGAGGCGATCAA 635
|| .|||| ..||||.||.||.||.||.|||.|||||||.|||...||
BL02021___yrr 588 CGCC-TTTCA-AAAGCATAATGATTTTGTCTGGGTAATGGAAGCGGCAAA 635
BSNT_03961___ 636 ACGGTAA 642
|..||||
BL02021___yrr 636 ATTGTAA 642
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