Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03957 and BL02018
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:58
# Commandline: needle
# -asequence dna-align/BSNT_03957___yrhB.1.5803.seq
# -bsequence dna-align/BL02018___yrhB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03957___yrhB-BL02018___yrhB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03957___yrhB-BL02018___yrhB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03957___yrhB
# 2: BL02018___yrhB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1182
# Identity: 848/1182 (71.7%)
# Similarity: 848/1182 (71.7%)
# Gaps: 81/1182 ( 6.9%)
# Score: 2973.5
#
#
#=======================================
BSNT_03957___ 1 ATGAAGAAAAAAACTTTGATGATACATGGCGGAATCACAGGTGATGAGAA 50
||||||..||||||....|||||.||.||||||||.|||||.||.||.||
BL02018___yrh 1 ATGAAGCCAAAAACGAAAATGATTCACGGCGGAATTACAGGAGACGAAAA 50
BSNT_03957___ 51 AACAGGCGCAGTTTCCGTGCCCATTTATCAAGTAAGCACGTACAAGCAGC 100
||||||.||.||.||.||.||.||.|||||.||.|||||||||||.||||
BL02018___yrh 51 AACAGGAGCGGTATCGGTTCCTATCTATCAGGTCAGCACGTACAAACAGC 100
BSNT_03957___ 101 CGAAAGCAGGACAGCATACAGGCTACGAGTATTCAAGAACGGCCAATCCG 150
|....||.||.|||||||||||.|||||.|||||..|.||||..||||||
BL02018___yrh 101 CTCGCGCCGGCCAGCATACAGGATACGAATATTCCCGGACGGGAAATCCG 150
BSNT_03957___ 151 ACTCGAACCGCTCTCGAAGCACTTG-TGACAGAACTGGAAAGCGGGGAAG 199
||..||||.||.||||||.| |||| |..|.||..|.|||.||||.|.||
BL02018___yrh 151 ACGAGAACGGCGCTCGAATC-CTTGATCGCGGATGTTGAAGGCGGTGCAG 199
BSNT_03957___ 200 CAGGTTATGCGTTCAGTTCGGGAATGGCTGCCATTACAGCAGTTATGATG 249
||||.|||||||||.|.||.||.|||||.||.||.|||||.||.||||||
BL02018___yrh 200 CAGGCTATGCGTTCGGCTCTGGGATGGCGGCGATCACAGCCGTCATGATG 249
BSNT_03957___ 250 CTGTTTAACAGCGGAGATCATGTCGTGTTGACTGATGATGTGTACGGCGG 299
||.|||||.|||||.|||||..||||.|||||.||||||||.||||||||
BL02018___yrh 250 CTTTTTAAAAGCGGCGATCACATCGTATTGACAGATGATGTATACGGCGG 299
BSNT_03957___ 300 AACATATCGCGTGATGACAAAGGTGCTTAACCGTCTTGGCATTGAATCAA 349
.||.||.|||||||||||||||||..|.||.||..|.|||||||||.|.|
BL02018___yrh 300 CACCTACCGCGTGATGACAAAGGTATTGAATCGCATCGGCATTGAAGCGA 349
BSNT_03957___ 350 CATTTGTTGATACGAGCAGCAGGGAAGAAGTTGAAAAAGCGATTCGCCCT 399
|.||...||||||||||||||..|||||..|.|||||||||||....||.
BL02018___yrh 350 CCTTCAGTGATACGAGCAGCATCGAAGACATCGAAAAAGCGATCAAGCCG 399
BSNT_03957___ 400 AATACAAAAGCCATTTATATTGAAACACTGACAAATCCGTTGCTCAAAAT 449
|||||||||||.||||||.||||.||.|.|||||||||.||..|.|||||
BL02018___yrh 400 AATACAAAAGCGATTTATGTTGAGACGCCGACAAATCCTTTATTGAAAAT 449
BSNT_03957___ 450 CACCGACTTGACG----CTCATGGCTGATATCGCAAAAAAAGCGGGTGTT 495
|||.|||.|.|.| || |||||.|..|| .|||||||..|..||
BL02018___yrh 450 CACTGACATCAAGAAAACT----GCTGAAACAGC-GAAAAAGCACGACTT 494
BSNT_03957___ 496 -CTGCTTATCGTAGACAACACCTTTAATACTCCTTATTTTCAGCAACCGC 544
.||||.||.||.|||||||||||..|.||.||.||.|||||..|.||..
BL02018___yrh 495 ATTGCTGATTGTCGACAACACCTTCTACACGCCGTACTTTCAAAATCCAA 544
BSNT_03957___ 545 TTACTTTAGGCGCTGATATCGTACTTCACAGTGCGACAAAATATCTT-GG 593
|..|.||.||.||.||||||||.||.|||||.|||||.||.|| ||| ||
BL02018___yrh 545 TCTCGTTGGGAGCCGATATCGTCCTCCACAGCGCGACGAAGTA-CTTGGG 593
BSNT_03957___ 594 CGGACACAGTGATGTCGTCGGAGGTTTAGTTGTGACAGCTTCGAAAGAGC 643
|||||||||.|||||||||||.||..|.||.||..||||.|||||.||.|
BL02018___yrh 594 CGGACACAGCGATGTCGTCGGCGGACTTGTCGTAGCAGCCTCGAAGGAAC 643
BSNT_03957___ 644 TTGGAGAAGAGCTGCATTTTGTGCAAAACTCCACAGGCGGCGTGCTCGGC 693
|.|.|||||||.|.|||||..|.||||||||.||||||||..|.|||||.
BL02018___yrh 644 TCGCAGAAGAGATCCATTTCATTCAAAACTCTACAGGCGGGATTCTCGGG 693
BSNT_03957___ 694 CCTCAAGATTCCTGGCTGTTAATGAGAGGAATCAAAACGTTGGGACTCAG 743
|||||.|||||||||||.||||||||.||.||.|||||..|.||..|.||
BL02018___yrh 694 CCTCAGGATTCCTGGCTCTTAATGAGGGGGATGAAAACCCTTGGCTTGAG 743
BSNT_03957___ 744 AATGGAAG-CGATCGATCAAAATGCGCGGAAAATCGCAAGCTTTCTTGAG 792
|||||||| |.|| ||.||||||||.||||||||||| .||.|| ||.||
BL02018___yrh 744 AATGGAAGCCCAT-GAGCAAAATGCCCGGAAAATCGC-GGCGTT-TTTAG 790
BSNT_03957___ 793 A--ATCACCCTGCTGTCCAAACGTTATATTACCCTG-------GTTCTTC 833
| ||||.||.||.|||.|||.|.|.||||||||.| ||.|
BL02018___yrh 791 ACGATCATCCCGCCGTCAAAAAGGTTTATTACCCAGGGCTGCCGTCC--- 837
BSNT_03957___ 834 AAATCATCCCGGACATGAGCTTGCAAAAACGCAAGGATCGGGCTTTGGCG 883
|||||.||||||||||||||.||...||||.|..|||||||.||.|
BL02018___yrh 838 ----CATCCGGGACATGAGCTTGCCAAGCGGCAAAGTACGGGCTTCGGAG 883
BSNT_03957___ 884 GCATGATCTCCTTTGATATTGGCAGTGA--AGAACGGG----TTG---AT 924
||||||||||.||||||||.||.|..|| ||||||.| ||| .|
BL02018___yrh 884 GCATGATCTCGTTTGATATCGGAAAAGAAGAGAACGTGGACCTTGTCCTT 933
BSNT_03957___ 925 G--CGTTTTTAGGAAATCTGAAACTGTTTACCATTGCTGAAAGCCTGGGG 972
| |||| |||||..||||||.||.||.||||||||.||.
BL02018___yrh 934 GGCCGTT-----------TGAAATGGTTTACGATCGCCGAAAGCCTTGGT 972
BSNT_03957___ 973 GCGGTTGAAAGCTTAATTTCTGTTCCTGCAAGAATGACACATGCCTCTAT 1022
|||||||||||..|.||.||.||.||.||..|||||||.|||||.||.||
BL02018___yrh 973 GCGGTTGAAAGTCTGATATCGGTGCCGGCGCGAATGACTCATGCTTCGAT 1022
BSNT_03957___ 1023 TCCGAGAGAACGCCGGCTTGAGCTCGGCATTACGGACGGCTTGATCAGAA 1072
.|||...||||||.||||.|||||.|||||.||.|||||.||.|||.|.|
BL02018___yrh 1023 CCCGCCTGAACGCAGGCTGGAGCTTGGCATCACAGACGGATTAATCCGTA 1072
BSNT_03957___ 1073 TTTCTGTAGGAATTGAAGATGCGGAAGACTTGTTGGAAGATATCGGC--C 1120
||||.|..||..||||.|||...||.||..||||||||||..| || |
BL02018___yrh 1073 TTTCCGCCGGGGTTGAGGATATTGACGATCTGTTGGAAGACTT--GCAGC 1120
BSNT_03957___ 1121 AAGCGCT------------TGAAAATATATAA 1140
||||||| |.||
BL02018___yrh 1121 AAGCGCTGGCCCCTCTTTCTTAA--------- 1143
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