Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01367 and BL02000
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:54
# Commandline: needle
# -asequence dna-align/BSNT_01367___yfiC.1.5803.seq
# -bsequence dna-align/BL02000___yfiC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01367___yfiC-BL02000___yfiC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01367___yfiC-BL02000___yfiC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01367___yfiC
# 2: BL02000___yfiC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2131
# Identity: 1125/2131 (52.8%)
# Similarity: 1125/2131 (52.8%)
# Gaps: 623/2131 (29.2%)
# Score: 2438.0
#
#
#=======================================
BSNT_01367___ 1 ATG------CTA--AAAGACATCCGCAAGCCTTTCCAATATCCCAA---A 39
||| |.| |||| ||| ||.|.|| |.||| ||||| |
BL02000___yfi 1 ATGAGCCAACAACCAAAG-CAT---CACGGCT---CTATA-CCCAAAGGA 42
BSNT_01367___ 40 CTGC-CAATTGACAAAAAAGAAGGAGCGAAAAAGCGGGCGAAAGCAAAGG 88
.||| ||| ||||||| .|||||| |..
BL02000___yfi 43 ATGCACAA--GACAAAA--------------------CCGAAAG---AAT 67
BSNT_01367___ 89 ATACAAAGGGCACAC---TGAGACGAATCTGGTCTTACTTGGC------- 128
.||.|||| ||.| ||||| |||||
BL02000___yfi 68 TTAAAAAG---ACCCTTTTGAGA---------------TTGGCCCGCTAT 99
BSNT_01367___ 129 -TGAAAGAAAA----GGAC-----------TGCTCGTACTTGTCAT-GCT 161
| |||| |||| |||||| |||||.| |||
BL02000___yfi 100 TT-----AAAACCGCGGACCTTCCAGCTGGTGCTCG---TTGTCTTCGCT 141
BSNT_01367___ 162 G-----ATGG------------TTGTCATCAGCGCGA---TATTCGGG-- 189
| .||| .|||||||||..|.| |..|||||
BL02000___yfi 142 GCAATATTGGCGACATTATTTAATGTCATCAGTCCAAAACTTCTCGGGGA 191
BSNT_01367___ 190 ------CTCCTTGGCCCCTTTGTGATCGGA----------AAGGCCATTG 223
|||.| |||||| |||.| |||||
BL02000___yfi 192 CGCGACCTCTT----CCCTTT----TCGCAAGCTTTAAAGAAGGC----- 228
BSNT_01367___ 224 ACC--------AT-----TTTATCGTCGGGAAAACGGTCAGC--GGCTTG 258
||| || |||.|||.|.|||..|||.|.|.| |||..|
BL02000___yfi 229 ACCGGTGTTCAATTCGGCTTTCTCGGCCGGATCACGCTGATCCTGGCAGG 278
BSNT_01367___ 259 ATTCCCGT-TTTGCTTCTTCTGCTCGCTATCTATA---TCATTCAG---T 301
||| || |.|||| |||| |||.|.|.|| ||.|.||| |
BL02000___yfi 279 ATT---GTATCTGCT--TTCT----GCTTTGTTTACGTTCTTGCAGCATT 319
BSNT_01367___ 302 CCCTG-TCGCTTTGGTTTC----AAAACTATTGGATGAT-TACGATCT-C 344
.|||| |.||...|||..| ||||| ||| |||||..| |
BL02000___yfi 320 ACCTGATGGCCGGGGTAGCCCAGAAAAC--------GATATACGAAATGC 361
BSNT_01367___ 345 GCAGGGCACGGTTTTCAGAATGAGAAGCGAATTGTTCACCCATCTGCATG 394
||..||.| || ||||||.|||| ||
BL02000___yfi 362 GCCAGGAA--GT-----GAATGAAAAGC--------------------TG 384
BSNT_01367___ 395 A-GCTGCCGATTCCATTT-------TTTGATAAACAGCGGCACGGCGAGC 436
| ||.|| |||.||| |.|||.||.||...|||||||||..
BL02000___yfi 385 ACGCGGC----TCCCTTTAAAGTACTATGACAAGCATTCGCACGGCGACA 430
BSNT_01367___ 437 TGATGAGCCGGGTGACG--AATGACATCGAAAATGTCAGTTCTACCTTAA 484
.|.|.|||| |.|.|| |||||.|||||.|||.|| |
BL02000___yfi 431 CGCTCAGCC--GCGCCGTCAATGATATCGACAATATC------------A 466
BSNT_01367___ 485 ACACGTCAGTCATTCAAATTTTG--TCAAGCG----------TGATCACC 522
|.|||||| ||| .||.||| ||||.||.
BL02000___yfi 467 ATACGTCA------------TTGCAGCAGGCGCTGACGCAAATGATTACG 504
BSNT_01367___ 523 TTTGCCGGGACGATTG-CGG-----------TGATGCTGTACATGAGCC- 559
|.||.|...||.||.| ||| |||||||.|..||.||||
BL02000___yfi 505 TCTGTCATTACAATAGTCGGAATCATCGTCATGATGCTTTTGATCAGCCC 554
BSNT_01367___ 560 --------CGCTC-----CTTACAT--TGATTACGCTGACCATTATTCCG 594
||||| ||| ||| .|.|..||||.|.||
BL02000___yfi 555 TGTGCTGACGCTCGTCGTCTT-CATCACGGTCCCGCTCAGCA-------- 595
BSNT_01367___ 595 GTGATGGCAG--CGA------GCCT----------GAAATGGATCAC--C 624
||.||||.| ||| |||| |||| ||| |
BL02000___yfi 596 -TGCTGGCCGTCCGATTCATTGCCTCATTTTCGCAGAAA-----CACTTC 639
BSNT_01367___ 625 AACCGAACGGGAAAGCTGTTTAAAGAACAGCAGAAAAACCTAGGTGATCT 674
.||| || |||||.|||.|.||.||.||..|
BL02000___yfi 640 -GCCG--CG------------------CAGCAAAAAGAACTCGGCGACAT 668
BSNT_01367___ 675 GAATGGGTATATTGAGGAATCTGTTTCAGGCGCAAAGGTCA-----TCAA 719
.||.||..|..||||.||| .|||||..||.||| ||| |.||
BL02000___yfi 669 CAACGGACACGTTGAAGAA-ATGTTTACGGGGCA----TCAGGAAGTAAA 713
BSNT_01367___ 720 AGCATATTC--ACGTG----AGAAGCAGATTACTGCTGAATTTCTCGAAA 763
.|| |||| .|.|| |.|||| |||| |.|| ||||....|||.
BL02000___yfi 714 GGC--ATTCGGGCATGAAGAAAAAGC-GATT-CAGC--AATTCGATGAAG 757
BSNT_01367___ 764 AAAACG-----CTGCACTCAAGACGTCGGGCTTTTGG---GCGCAGACGA 805
.|||.| ||..|| || |||.||| ||| ||||||...|
BL02000___yfi 758 TAAATGAGCGTCTTTAC-CA----GTCAGGC---TGGAAAGCGCAGTTTA 799
BSNT_01367___ 806 TTTCCGG---GTTTATCCCGAAGGTCATGA-ACTCTTTGAAT----AACT 847
||||||| |.|.||.|||| |.|||| |.|| || |||.
BL02000___yfi 800 TTTCCGGTCTGATGATGCCGA---TGATGACATTC-----ATCGGCAACC 841
BSNT_01367___ 848 TAAGCTTTACAATGATTG-CGGC--AATCGGCGGTTTGTTTGCGCTGAAA 894
|..|||.| .||.||| |.|| ||.|||||||.|.||.|..||.||.
BL02000___yfi 842 TCGGCTAT---GTGTTTGTCAGCATAACCGGCGGTATTTTCGTTCTTAAC 888
BSNT_01367___ 895 GGCTGGATCTCGATCGGCTCCATCGTCGT-----CTTTGCCGAGTATTCA 939
|||....|.|.|||||| .|.||| |||| |||.||
BL02000___yfi 889 GGCACCCTTTTGATCGG------AGGCGTGCAGGCTTT------TATCCA 926
BSNT_01367___ 940 AGA-------CAATTT----ACACGCCCTTTAAACGATCTGGCCAACCAG 978
|.| |||||| |..|||.|.|| |.|.||| ||.|
BL02000___yfi 927 ATATACGCAGCAATTTTCCCAGCCGCTCGTT---CAAGCTG-----CCGG 968
BSNT_01367___ 979 TTT----AATACGATGCTGTCCGCAATTGCCGGCGCTGAACGGGTGTTTG 1024
..| |||||.||.|..||.|||||.||...|||.|||.|||||||
BL02000___yfi 969 AATCGCGAATACAATCCAATCGGCAATCGCATCCGCCGAAAGGGTGTT-- 1016
BSNT_01367___ 1025 CCGTGCTT---GATGAAAAAGAAGAGCGCGATGATGAAAAGAACGCCGTG 1071
|.|| ||| ||.|||.|||||||...||..|| .|||||| |
BL02000___yfi 1017 CAGT-CTTTTGGACGAAGAAGAAGAAACCGGGGA-------GACGCCG-G 1057
BSNT_01367___ 1072 CATCAGCCCATCCAAACAGGCAGCATTGAATTCAGG-GATGTTT------ 1114
|.| |||||.|.||.|||| .|||.|| ||| |||||.|
BL02000___yfi 1058 CTT----CCATCGATACCGGCA-AATTAAA---AGGCGATGTATCGTTTG 1099
BSNT_01367___ 1115 ---------CCTTCGGTTACGATAAA--------GGGCAGCAGACACTGA 1147
||||||||||.|||||| ||.||.|.|..|||.|
BL02000___yfi 1100 AACATGTCGCCTTCGGTTATGATAAAAACGTTCCGGTCATCCGCGACTTA 1149
BSNT_01367___ 1148 AGCATTTACAGTTCACCGTGCC--TGCGGGGCAGTCCATCGCGTTTGTCG 1195
|||.||.|| ||| .|..||.|||.|.||.|||.|.||||
BL02000___yfi 1150 AGCCTTCAC----------GCCAAAGAAGGCCAGACGATTGCGATCGTCG 1189
BSNT_01367___ 1196 GACCGACGGGGGCGGGGAAGACAACCGTCACTAACCTTCTCGCCCGTTTT 1245
|||||||.||.||.||.||.||.||..|||..||..|.||....||||||
BL02000___yfi 1190 GACCGACCGGCGCTGGAAAAACGACGATCATCAATTTGCTGATGCGTTTT 1239
BSNT_01367___ 1246 TACGAGCCTGACGAAGGAAAAATTTTAA--TCGACGGTACAGATATTA-- 1291
||.||.|...||.||||.|..| |.|| |||.|||.||||||||.|
BL02000___yfi 1240 TATGAACTAAACAAAGGCAGCA--TCAAGGTCGGCGGCACAGATATCAGC 1287
BSNT_01367___ 1292 AAACCCTTACTAGAGCAAGCCTGAGAAAAAACATG---GGGTTTGTTCTT 1338
.|.|..|..|..||.||.|| ||| ||.|||| |.|.|.||..|.
BL02000___yfi 1288 GAGCTGTCGCGCGAACAGGC--GAG---AAGCATGTTTGCGATGGTGTTA 1332
BSNT_01367___ 1339 CAGGATTCTTTCTTATTTCAGGGAACGATCAGAGAAAACATTCGC-TACG 1387
|||||..|.|...|.||..|.||.||.|||.|.||||||| |||| ||||
BL02000___yfi 1333 CAGGACACATGGCTGTTCAACGGCACCATCCGGGAAAACA-TCGCTTACG 1381
BSNT_01367___ 1388 GCAGGCTTGATGCTTCTGATCAGGAAGTCGAAGCC---------GCTGCA 1428
|||.|||.|...| ||.| ||| ||||.| ||.|||
BL02000___yfi 1382 ---GGCGTGAAGGCGC-GACC--GAA---GAAGACATCATCAGAGCGGCA 1422
BSNT_01367___ 1429 AAAACAGCGAATGCCCATAGTTTTATTGAAAGGC----TGCCAAAAGGGT 1474
|||...||..|||||.|...|||||| ..|| ||||..|.||.|
BL02000___yfi 1423 AAAGGCGCCTATGCCGACGATTTTAT----CCGCACCTTGCCGGACGGCT 1468
BSNT_01367___ 1475 ATGACACCGTGCT-------GA--CGCAAAACGGTTCGGGCATCAGTCAG 1515
||||.||.||.|| || |.||||||...||| || ||
BL02000___yfi 1469 ATGATACGGTACTTGGCGAAGATGCCCAAAACATCTCG-----CA---AG 1510
BSNT_01367___ 1516 GG--ACAGAAGCAGTTGATTTCTATAGCGAGGGCGGTGCTTGCCGATCCG 1563
|| ||.|.|||..||.| |.||.|||||.||..|..|.||.||||||
BL02000___yfi 1511 GGCAACGGCAGCTCTTAA---CGATCGCGAGAGCCATTTTAGCTGATCCG 1557
BSNT_01367___ 1564 GTTCTTCTCATTTTGGATGAAGCGACAAGCAACATTGATACCGTTACAGA 1613
....||.|.||.||.||||||||||||||||...|.||.|||...||.||
BL02000___yfi 1558 AAGATTTTAATATTAGATGAAGCGACAAGCAGTGTCGACACCCGGACGGA 1607
BSNT_01367___ 1614 AGTCAACATTCAAGAAGCGCTTGCCCGTTTAATG--------GAAGG--A 1653
|.|.||.||||||.||||| ||| ||.|| |
BL02000___yfi 1608 AATGAATATTCAAAAAGCG------------ATGAACAAACTGATGGCCA 1645
BSNT_01367___ 1654 A--GAACAAGCGTCATCATTGCCCACAGGCTGAACACCATTCAAAGA-GC 1700
| |.||.|||.|..|.||.||||||.|.||....|||||| ||||| ||
BL02000___yfi 1646 ACCGTACGAGCTTTGTTATCGCCCACCGTCTTTCTACCATT-AAAGATGC 1694
BSNT_01367___ 1701 GGACCAGATTGTGGTGCTAAAAGACGGTGAAATGATTGAAAAAGGCAGCC 1750
.|||..||||.|.|||.|.|||.||||.||.||.||||||||||||||||
BL02000___yfi 1695 CGACATGATTCTTGTGATGAAAAACGGAGATATTATTGAAAAAGGCAGCC 1744
BSNT_01367___ 1751 ATGACGAGCTGATTCAGCAA-AAAGGATTTTACAGTGACTTATATGAAAG 1799
|.||.|||||| .||.|||| ||.||||||||....||.||.|||.|.||
BL02000___yfi 1745 ACGAAGAGCTG-CTCCGCAAGAACGGATTTTATGCCGATTTGTATAACAG 1793
BSNT_01367___ 1800 CCAATT----TGAGAAATAG----------- 1815
|||.|| .|.|||..||
BL02000___yfi 1794 CCAGTTCTCCCGGGAAGAAGCCGTCAGCTAA 1824
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