Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03014 and BL01992

See Amino acid alignment / Visit BSNT_03014 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:42
# Commandline: needle
#    -asequence dna-align/BSNT_03014.1.5803.seq
#    -bsequence dna-align/BL01992___yngE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03014-BL01992___yngE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03014-BL01992___yngE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03014
# 2: BL01992___yngE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1571
# Identity:    1165/1571 (74.2%)
# Similarity:  1165/1571 (74.2%)
# Gaps:          82/1571 ( 5.2%)
# Score: 4282.5
# 
#
#=======================================

BSNT_03014         1 ATGGATTAT-------GAAAAGGA-----ACGAACAGAACGGGCTGAACG     38
                            ||       ||||||||     |.||||..|.|.|     .||
BL01992___yng      1 -------ATGCCGGCCGAAAAGGAATTGTATGAACGCATCCG-----CCG     38

BSNT_03014        39 GATTCGAAAAGGCGGAGCGGAAAAGTATCATCAAGGCAATCGGGAAAAAG     88
                     |||||...|.|||||.|||||.||.||.|||.|||..|||..|.||||||
BL01992___yng     39 GATTCAGGAGGGCGGCGCGGAGAAATACCATGAAGCTAATAAGAAAAAAG     88

BSNT_03014        89 GCAAGCTCTTTGTCAGAGAGCGGCTTTCCCTTCTCTTTGACG-ATGACAT    137
                     |.||..|.|||||||||||.||..|....||.||..|||||| |.||| |
BL01992___yng     89 GGAAATTATTTGTCAGAGACCGATTAAAGCTGCTGCTTGACGAAGGAC-T    137

BSNT_03014       138 TGAGCTAGAAGACGCTTTTTTTGCGGAATGTATGTCAGACGGGCTTCCCG    187
                     .||.|||||.|||||.||||||||..|.||.|||.|.||||||||.||.|
BL01992___yng    138 CGACCTAGAGGACGCGTTTTTTGCCAATTGCATGGCTGACGGGCTACCGG    187

BSNT_03014       188 CTGACGGAGTTGTAACCGGTATCGGCAAAATCGGCGGCCAAACTGTTTGC    237
                     |.||.|||||.||.||.||.|||||.|||||||||||.|.|||.||||||
BL01992___yng    188 CAGATGGAGTCGTCACTGGAATCGGAAAAATCGGCGGGCGAACCGTTTGC    237

BSNT_03014       238 GTCATGGCGAATGATTCAACAGTGAAAGCGGGGTCATGGGGAGCTAAAAC    287
                     ||||||||.|||||||||||.||.|||||.||.|||||||||||.|.|||
BL01992___yng    238 GTCATGGCCAATGATTCAACTGTCAAAGCAGGATCATGGGGAGCGAGAAC    287

BSNT_03014       288 AGTTGAAAAAATCATCAGAATTCAAGAAACCGCGGAAAAATTAAACTGTC    337
                     .|||||||||||||||.|.||.||.|||||.||.||||||.|.||.||.|
BL01992___yng    288 CGTTGAAAAAATCATCCGCATCCAGGAAACAGCCGAAAAACTGAATTGCC    337

BSNT_03014       338 CGCTCATTTATTTAGTCGATTCGGCAGGCGCCCGAATTACCGACCAAATC    387
                     ||||..|||||||.|||||||||||||||||..|.|||||.||.|||.|.
BL01992___yng    338 CGCTTCTTTATTTGGTCGATTCGGCAGGCGCAAGGATTACGGATCAAGTT    387

BSNT_03014       388 AATGTCTTTCCAGGGAGACGCGGTGCAGGAAGAATTTTTTACAATCAAGT    437
                     .|..|.|||||.|||.||.|.||.||.||..|.||||||||..|.|||||
BL01992___yng    388 GACATGTTTCCGGGGCGAAGAGGAGCGGGGCGGATTTTTTATCAGCAAGT    437

BSNT_03014       438 CAAATTATCGGGACGCATTCCGCAAATCTGTCTGCTT-TTCGGACCATCT    486
                     |||||||||.||.|||||.|||||||||||||| ||| |||||.||.||.
BL01992___yng    438 CAAATTATCCGGGCGCATCCCGCAAATCTGTCT-CTTGTTCGGGCCTTCA    486

BSNT_03014       487 GCGGCAGGTGGCGCTTATATTCCGGCCTTCTGTGATATCGTCGTTATGGT    536
                     ||||||||.|||||.||.||.|||||.||.||.||.||||||.|||||||
BL01992___yng    487 GCGGCAGGAGGCGCCTACATACCGGCTTTTTGCGACATCGTCATTATGGT    536

BSNT_03014       537 AGACGGTAACGCCTCCATGTATTTAGGCTCGCCAAGGATGGCGGAAATGG    586
                     .||.|||||||||||.|||||||||||||||||..|.|||||||||||||
BL01992___yng    537 CGAAGGTAACGCCTCGATGTATTTAGGCTCGCCGCGCATGGCGGAAATGG    586

BSNT_03014       587 TTATTGGAGAAAAAGTGTCTCTTGAAGAAATGGGTGGCGCCCGTATGCAT    636
                     |.||.||.||||||||.||.||||||||||||||.|||||..|.|||||.
BL01992___yng    587 TGATCGGCGAAAAAGTATCGCTTGAAGAAATGGGCGGCGCGAGAATGCAC    636

BSNT_03014       637 TGCTCAATCTCCGGCTGCGGAGATATTCTTGCAGAAACTGAAGAAGAAGC    686
                     ||.||..|.||.|||||||||||.||||||||.||.||.||||||||.||
BL01992___yng    637 TGTTCTGTTTCAGGCTGCGGAGACATTCTTGCCGACACGGAAGAAGATGC    686

BSNT_03014       687 CATACAGCTGGCGCG--GGCTTATTTGTCTTACTTTCCGGCAAATTTTCA    734
                     .||..||..||||||  ||  |||.|.||.|||||||||.|.|| .|.||
BL01992___yng    687 GATCAAGTCGGCGCGCCGG--TATCTTTCCTACTTTCCGTCGAA-CTACA    733

BSNT_03014       735 -AGAAAAAGCGCC---CATTCATGAGAAA--CGCCCGCCAAAACACTTCA    778
                      .|||||||||||   ||||.|.|..|||  ||||||             
BL01992___yng    734 CCGAAAAAGCGCCTGTCATTGAAGCAAAATCCGCCCG-------------    770

BSNT_03014       779 AAACTCCGCTTGCC------------GACGTCATTCCGCAAAATCAAAAC    816
                         ||||.|||.|            |||.||||||||.||||.||||||
BL01992___yng    771 ----TCCGTTTGACCGGTCATTGGAGGACATCATTCCGAAAAACCAAAAC    816

BSNT_03014       817 GCACCTTTTGATATGCATGAGCTGATT-----GAGCGGGTCATAGATGAA    861
                     ||.||.|||.|.||| |||    ||||     ||.|||.||||.||||||
BL01992___yng    817 GCTCCGTTTCAGATG-ATG----GATTTAATCGATCGGATCATTGATGAA    861

BSNT_03014       862 GACTCATTTTTTGAGATCAAAGCCTTATTTGCACCGGA-ATTATTGACGG    910
                     |..||.||||.||||||||||...||.||.||.||.|| .|.||| ||.|
BL01992___yng    862 GCGTCTTTTTATGAGATCAAAAAATTGTTCGCGCCAGAGCTGATT-ACCG    910

BSNT_03014       911 GCCTCGCACGAATCCACGGACAGCCTGTCGGCATTGTTGCAAACCAGCCG    960
                     |..|.|||.|.||.|||||.||||||||||||||..||||.||.||||||
BL01992___yng    911 GTTTGGCAAGGATTCACGGGCAGCCTGTCGGCATCATTGCCAATCAGCCG    960

BSNT_03014       961 AAGGTAAAAGGAGGCGTCTTATTCCACGATTCAGCAGACAAAGCGGCTAA   1010
                     ..|||.|||||.||.||.||.|||||||||||.||||||||.||.||.||
BL01992___yng    961 CGGGTCAAAGGCGGTGTTTTGTTCCACGATTCGGCAGACAAGGCCGCAAA   1010

BSNT_03014      1011 GTTTATTACCTTATGTGACGCTTTTCATATCCCATTGCTGTTCTTAGCCG   1060
                     ||||||.|..||.|||||.||.|.|||||||||..|||||||..|.||.|
BL01992___yng   1011 GTTTATCAATTTGTGTGATGCCTATCATATCCCGCTGCTGTTTCTGGCTG   1060

BSNT_03014      1061 ATATCCCCGGTTTTATGATTGGCACAAAAGTAGAACAGGCTGGGATTATC   1110
                     |.|||||||||||||||||.||.||.|||||.||...|||.||.||.|||
BL01992___yng   1061 ACATCCCCGGTTTTATGATCGGAACGAAAGTCGAGAGGGCGGGTATCATC   1110

BSNT_03014      1111 AGACACGGAGCGAAAATGATTTCTGCGATGTCAGAGGCAACTGTTCCAAA   1160
                     ||||||||.||||||||||||||.||||||.|.||.|||||.||.||.||
BL01992___yng   1111 AGACACGGTGCGAAAATGATTTCAGCGATGGCCGAAGCAACCGTACCGAA   1160

BSNT_03014      1161 ACTCTCTGTCATTGTCCGAAAAGCTTACGGGGCGGGGTTGTATGCAATGG   1210
                     |.|.||.|||||.|||.|.||||||||.||.||.||.||||||||.||||
BL01992___yng   1161 AATATCCGTCATCGTCAGGAAAGCTTATGGTGCAGGCTTGTATGCGATGG   1210

BSNT_03014      1211 CAGGGCCGGCATTTGAACCGGATTGCTGTCTAGCGCTCCCAACCGCCCAA   1260
                     |.||.|||||.||||||||.||.||||||||.|||||.||.||.||.|||
BL01992___yng   1211 CCGGTCCGGCCTTTGAACCTGACTGCTGTCTGGCGCTGCCGACGGCGCAA   1260

BSNT_03014      1261 ATCGCCGTCATGGGCCCTGAGGCAGCTGTAAACGCTGTCTACGCTAAAAA   1310
                     ||.||||||||||||||.||.|||||.|||||.||.||.|||||||||||
BL01992___yng   1261 ATTGCCGTCATGGGCCCGGAAGCAGCGGTAAATGCCGTTTACGCTAAAAA   1310

BSNT_03014      1311 AATCGCCGAGCTGCCAGAAGAAGAGAGAGCCGCATTTATCAGCAG-CAAA   1359
                     ||||||.||..||||.||||||||..|..|||||||.||| ||.| .|||
BL01992___yng   1311 AATCGCAGAATTGCCTGAAGAAGAACGGTCCGCATTCATC-GCCGAAAAA   1359

BSNT_03014      1360 CGGGAGGAATACAAAGAGGACATCAATATCTACCGTCTGGCTTCAGAAAT   1409
                     |||.|.||.|||.||.|.|||||..|.||.|||||.||.|||||||||||
BL01992___yng   1360 CGGAAAGAGTACCAAAAAGACATAGACATTTACCGGCTTGCTTCAGAAAT   1409

BSNT_03014      1410 GATCATTGATGCTGTTATCCCAGCCAATTCGCTGCGTGATGAGCTGGCCA   1459
                     |||..|.||.|...|.||.||.|||.|.||||||||....||.||...||
BL01992___yng   1410 GATTGTCGACGGGATCATTCCGGCCGACTCGCTGCGAACGGAACTCATCA   1459

BSNT_03014      1460 AACGGCTCAAGGCATACATGACAAAGGAAATGACATTTACCAATCGAAAG   1509
                     |||||||.||.|||||.|||||.||..|.|||||||||||..|.||.|||
BL01992___yng   1460 AACGGCTGAATGCATATATGACCAAATACATGACATTTACGGAACGGAAG   1509

BSNT_03014      1510 CATCCGGTTTATCCGGTGTAA   1530
                     |||||.||||||||.||.|||
BL01992___yng   1510 CATCCTGTTTATCCCGTCTAA   1530


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