Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03015 and BL01991
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:42
# Commandline: needle
# -asequence dna-align/BSNT_03015___yngF.1.5803.seq
# -bsequence dna-align/BL01991___yngF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03015___yngF-BL01991___yngF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03015___yngF-BL01991___yngF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03015___yngF
# 2: BL01991___yngF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 848
# Identity: 552/848 (65.1%)
# Similarity: 552/848 (65.1%)
# Gaps: 130/848 (15.3%)
# Score: 1641.5
#
#
#=======================================
BSNT_03015___ 1 ATGGGAGACTC--TATTCTTT-TTACTGTTAAAAATGAACATATGG---- 43
|| |||| |.| |.|||||| ||.| |.|||.||.||...||
BL01991___yng 1 AT-GGAG-CCCAATGTTCTTTATTCC----ATAAACGAGCAGTCGGTCGC 44
BSNT_03015___ 44 CGTTGATCACCTTTAACAGGCCTCAGGCAGCAAATGCTCTTTCAGC--GG 91
|| ||.|.||..|.||||||||.|||||.||||||||.||.|| || ||
BL01991___yng 45 CG-TGTTGACGCTGAACAGGCCGCAGGCTGCAAATGCCCTCTC-GCTTGG 92
BSNT_03015___ 92 AAATGCT--TAGA-AACCTGCAAATGATTCTTCAGGAAATTGAATTCAAC 138
||| |.|| .||.|.||....||.|||| ||.|| |||| ..
BL01991___yng 93 ----GCTTCTCGACGACTTTCAGCGCATCCTTC--GAGAT---ATTC-GT 132
BSNT_03015___ 139 TCAAA------CATCCGCTGCGTCATCCTCACAGGCACCGGTGAAAAAGC 182
||||| |.|||||||.||||||.|.||.||.|..||.||.|...|
BL01991___yng 133 TCAAACCCGGCCGTCCGCTGTGTCATCATAACGGGAAAAGGGGACAGGAC 182
BSNT_03015___ 183 GTTTTGTGCAGGGGCAGACCTAAAGGAA------CGGAT----AAAACTG 222
||||||||||||.||.||..|||||||| ||.|| .||||.|
BL01991___yng 183 GTTTTGTGCAGGCGCCGATTTAAAGGAAAGAGCCCGCATGAGCCAAACAG 232
BSNT_03015___ 223 AA-AGAAGATCAGGTTCTGGAAAGTGTATCTCTCATTCAAAG-------- 263
|| .|||| |||| .|||.||.||.||||||.|
BL01991___yng 233 AAGCGAAG--CAGG---------CTGTTTCCCTGATTCAACGCGTGGTCA 271
BSNT_03015___ 264 ----AACGG-----CGGCTTTACTTGATGCCTTGCCGCAGCCGGTCATAG 304
||||| | ||||||||||.|||||.|
BL01991___yng 272 GCGAAACGGAAAAAC-----------------TGCCGCAGCCCGTCATCG 304
BSNT_03015___ 305 CTGCGATAAATGGAAGCGCATTAGGCGGCGGACTAGAATTGGCATTGGCA 354
||.|..||||.||||||||.|||||.||.||.||.||..|.||||||||.
BL01991___yng 305 CTTCATTAAACGGAAGCGCTTTAGGAGGGGGGCTGGAGCTTGCATTGGCG 354
BSNT_03015___ 355 TGCGACCTTCGAATCGCAGCTGAATCAGCTGTG--CTGGGACTTCCGGAA 402
||||||.|..|.||||||||.||| ||..| || ||.||.||.||.|||
BL01991___yng 355 TGCGACATCAGGATCGCAGCCGAA-CATAT-TGAACTCGGCCTCCCCGAA 402
BSNT_03015___ 403 ACAGGGTTAGCTATTATCCCGGGCGCTGGAGGGACCCAAAGGCTGCCCCG 452
|||..|.|.||.||.||.||.||.||.||||||||.||..||||||||||
BL01991___yng 403 ACAACGCTCGCAATCATTCCAGGGGCAGGAGGGACACAGCGGCTGCCCCG 452
BSNT_03015___ 453 GCTGATTGGCAGAGGAAAAGCAAAAGAATTCATTTATACAGGCAGACGCG 502
..||||.|||||.|||||.||.||||||.|.||.|.|||.|||.|.|||.
BL01991___yng 453 CTTGATCGGCAGGGGAAAGGCGAAAGAAATGATCTTTACCGGCTGCCGCA 502
BSNT_03015___ 503 TGACCGCACACGAA--GCAAAAGAAATCGGCCTTGTAGAGCATGTCACGG 550
|.|.|||..|.||| ||||||| |||.||||.||.||.|||||| |
BL01991___yng 503 TCAGCGCCGAAGAAGCGCAAAAG--ATCAGCCTGGTTGAACATGTC---G 547
BSNT_03015___ 551 CTC--CTTGTGACCTTATGCCAA--AAGC-AGAGGAACTGGC--CGCAGC 593
.|| |||..||..||| || |||| ||.|.|| || |||.||
BL01991___yng 548 TTCCGCTTTCGAAGTTA----AAGGAAGCGAGTGAAA---GCATCGCGGC 590
BSNT_03015___ 594 ---CATTTCTGCCAACGGGCCGATCGCTGTCCGTCAGGCTAAATTTGCAA 640
|||..|.||.|||||.|||.|.||.|||.|.||.||.||.|||||.|
BL01991___yng 591 GAACATCGCGGCGAACGGACCGGTAGCCGTCAGACAAGCGAAGTTTGCCA 640
BSNT_03015___ 641 TCAATAAAGGATTGGAGACAGATCTCGCTACAGGCCTTGCGATTGAACAA 690
|||||.||||..|.|||||||.|.|||..|||||.|||||.|||||||||
BL01991___yng 641 TCAATCAAGGCCTTGAGACAGCTATCGAAACAGGGCTTGCCATTGAACAA 690
BSNT_03015___ 691 AAAGCGTATGAACAAACCATCCCGACAAAAGACAGGAGAGAAGGGCTTCA 740
|||||.|||||||..||.||.|||||.||||||||||.|||||||||..|
BL01991___yng 691 AAAGCCTATGAACTGACGATTCCGACGAAAGACAGGACAGAAGGGCTGAA 740
BSNT_03015___ 741 GGCCTTTCAAGAAAAAAGACGG--GCCG---TATACAAGGGAATATAA 783
.||.|||..|||||| .||| |||| ||||| ||||..||||
BL01991___yng 741 AGCTTTTGCAGAAAA---GCGGAAGCCGGATTATAC--GGGAGAATAA 783
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