Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03015 and BL01991

See Amino acid alignment / Visit BSNT_03015 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:42
# Commandline: needle
#    -asequence dna-align/BSNT_03015___yngF.1.5803.seq
#    -bsequence dna-align/BL01991___yngF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03015___yngF-BL01991___yngF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03015___yngF-BL01991___yngF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03015___yngF
# 2: BL01991___yngF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 848
# Identity:     552/848 (65.1%)
# Similarity:   552/848 (65.1%)
# Gaps:         130/848 (15.3%)
# Score: 1641.5
# 
#
#=======================================

BSNT_03015___      1 ATGGGAGACTC--TATTCTTT-TTACTGTTAAAAATGAACATATGG----     43
                     || |||| |.|  |.|||||| ||.|    |.|||.||.||...||    
BL01991___yng      1 AT-GGAG-CCCAATGTTCTTTATTCC----ATAAACGAGCAGTCGGTCGC     44

BSNT_03015___     44 CGTTGATCACCTTTAACAGGCCTCAGGCAGCAAATGCTCTTTCAGC--GG     91
                     || ||.|.||..|.||||||||.|||||.||||||||.||.|| ||  ||
BL01991___yng     45 CG-TGTTGACGCTGAACAGGCCGCAGGCTGCAAATGCCCTCTC-GCTTGG     92

BSNT_03015___     92 AAATGCT--TAGA-AACCTGCAAATGATTCTTCAGGAAATTGAATTCAAC    138
                         |||  |.|| .||.|.||....||.||||  ||.||   |||| ..
BL01991___yng     93 ----GCTTCTCGACGACTTTCAGCGCATCCTTC--GAGAT---ATTC-GT    132

BSNT_03015___    139 TCAAA------CATCCGCTGCGTCATCCTCACAGGCACCGGTGAAAAAGC    182
                     |||||      |.|||||||.||||||.|.||.||.|..||.||.|...|
BL01991___yng    133 TCAAACCCGGCCGTCCGCTGTGTCATCATAACGGGAAAAGGGGACAGGAC    182

BSNT_03015___    183 GTTTTGTGCAGGGGCAGACCTAAAGGAA------CGGAT----AAAACTG    222
                     ||||||||||||.||.||..||||||||      ||.||    .||||.|
BL01991___yng    183 GTTTTGTGCAGGCGCCGATTTAAAGGAAAGAGCCCGCATGAGCCAAACAG    232

BSNT_03015___    223 AA-AGAAGATCAGGTTCTGGAAAGTGTATCTCTCATTCAAAG--------    263
                     || .||||  ||||         .|||.||.||.||||||.|        
BL01991___yng    233 AAGCGAAG--CAGG---------CTGTTTCCCTGATTCAACGCGTGGTCA    271

BSNT_03015___    264 ----AACGG-----CGGCTTTACTTGATGCCTTGCCGCAGCCGGTCATAG    304
                         |||||     |                 ||||||||||.|||||.|
BL01991___yng    272 GCGAAACGGAAAAAC-----------------TGCCGCAGCCCGTCATCG    304

BSNT_03015___    305 CTGCGATAAATGGAAGCGCATTAGGCGGCGGACTAGAATTGGCATTGGCA    354
                     ||.|..||||.||||||||.|||||.||.||.||.||..|.||||||||.
BL01991___yng    305 CTTCATTAAACGGAAGCGCTTTAGGAGGGGGGCTGGAGCTTGCATTGGCG    354

BSNT_03015___    355 TGCGACCTTCGAATCGCAGCTGAATCAGCTGTG--CTGGGACTTCCGGAA    402
                     ||||||.|..|.||||||||.||| ||..| ||  ||.||.||.||.|||
BL01991___yng    355 TGCGACATCAGGATCGCAGCCGAA-CATAT-TGAACTCGGCCTCCCCGAA    402

BSNT_03015___    403 ACAGGGTTAGCTATTATCCCGGGCGCTGGAGGGACCCAAAGGCTGCCCCG    452
                     |||..|.|.||.||.||.||.||.||.||||||||.||..||||||||||
BL01991___yng    403 ACAACGCTCGCAATCATTCCAGGGGCAGGAGGGACACAGCGGCTGCCCCG    452

BSNT_03015___    453 GCTGATTGGCAGAGGAAAAGCAAAAGAATTCATTTATACAGGCAGACGCG    502
                     ..||||.|||||.|||||.||.||||||.|.||.|.|||.|||.|.|||.
BL01991___yng    453 CTTGATCGGCAGGGGAAAGGCGAAAGAAATGATCTTTACCGGCTGCCGCA    502

BSNT_03015___    503 TGACCGCACACGAA--GCAAAAGAAATCGGCCTTGTAGAGCATGTCACGG    550
                     |.|.|||..|.|||  |||||||  |||.||||.||.||.||||||   |
BL01991___yng    503 TCAGCGCCGAAGAAGCGCAAAAG--ATCAGCCTGGTTGAACATGTC---G    547

BSNT_03015___    551 CTC--CTTGTGACCTTATGCCAA--AAGC-AGAGGAACTGGC--CGCAGC    593
                     .||  |||..||..|||    ||  |||| ||.|.||   ||  |||.||
BL01991___yng    548 TTCCGCTTTCGAAGTTA----AAGGAAGCGAGTGAAA---GCATCGCGGC    590

BSNT_03015___    594 ---CATTTCTGCCAACGGGCCGATCGCTGTCCGTCAGGCTAAATTTGCAA    640
                        |||..|.||.|||||.|||.|.||.|||.|.||.||.||.|||||.|
BL01991___yng    591 GAACATCGCGGCGAACGGACCGGTAGCCGTCAGACAAGCGAAGTTTGCCA    640

BSNT_03015___    641 TCAATAAAGGATTGGAGACAGATCTCGCTACAGGCCTTGCGATTGAACAA    690
                     |||||.||||..|.|||||||.|.|||..|||||.|||||.|||||||||
BL01991___yng    641 TCAATCAAGGCCTTGAGACAGCTATCGAAACAGGGCTTGCCATTGAACAA    690

BSNT_03015___    691 AAAGCGTATGAACAAACCATCCCGACAAAAGACAGGAGAGAAGGGCTTCA    740
                     |||||.|||||||..||.||.|||||.||||||||||.|||||||||..|
BL01991___yng    691 AAAGCCTATGAACTGACGATTCCGACGAAAGACAGGACAGAAGGGCTGAA    740

BSNT_03015___    741 GGCCTTTCAAGAAAAAAGACGG--GCCG---TATACAAGGGAATATAA    783
                     .||.|||..||||||   .|||  ||||   |||||  ||||..||||
BL01991___yng    741 AGCTTTTGCAGAAAA---GCGGAAGCCGGATTATAC--GGGAGAATAA    783


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