Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03020 and BL01987
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:43
# Commandline: needle
# -asequence dna-align/BSNT_03020___yngI.1.5803.seq
# -bsequence dna-align/BL01987___yngI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03020___yngI-BL01987___yngI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03020___yngI-BL01987___yngI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03020___yngI
# 2: BL01987___yngI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1731
# Identity: 1177/1731 (68.0%)
# Similarity: 1177/1731 (68.0%)
# Gaps: 174/1731 (10.1%)
# Score: 3723.5
#
#
#=======================================
BSNT_03020___ 1 ATGGCTGAACTCATCCATTCCACAATCGGCAGGCTGCTGGAACAAA---C 47
.||||.||.||..||||||..|||||.||.|.|.|..||||..||| |
BL01987___yng 1 TTGGCAGAGCTGCTCCATTTGACAATTGGAAAGTTATTGGAGAAAACCGC 50
BSNT_03020___ 48 AGCTGATGCGTATCCC-GATCGAGATGCTGTTGTGTATCCAGACCGAAAT 96
.||.||.|| ||| ||||..||.|||||.||.|||||.|||||....
BL01987___yng 51 GGCAGACGC----CCCTGATCACGAGGCTGTCGTCTATCCGGACCGCGGC 96
BSNT_03020___ 97 ATCCGCTATACGTACGCTCAATTTGA-CAGCCTGTGCCGTCAAACCGCTA 145
.|.||.|||||||||....||||||| ||| .|||||.|..||..|||.|
BL01987___yng 97 CTGCGTTATACGTACCGGGAATTTGACCAG-TTGTGCAGAAAAGTCGCAA 145
BSNT_03020___ 146 AAGGTCTTATGCGGATGGGGATTGGAAAAGGAGACCACGTCGCCATATGG 195
||||.||.|||..|.|.||.||||..|||||.||.||.|||||.||.|||
BL01987___yng 146 AAGGACTGATGGCGCTCGGTATTGATAAAGGTGAACATGTCGCAATTTGG 195
BSNT_03020___ 196 GCTTCTAATATCCCTGAATGGCTTGCCGTCCAGTTCGCAACTGCGAAGAT 245
|||||.||||..||.||||||||..|||.||||||.||..|.|| ||.|.
BL01987___yng 196 GCTTCCAATACTCCGGAATGGCTCACCGCCCAGTTTGCTTCGGC-AAAAG 244
BSNT_03020___ 246 C-GGAGCCGTGCTCGTAACCGTCAATACCAATTATCAAGCA-CACGAGCT 293
| ||.||.||.||.||.||.|.|||.||.||.||||||..| || |||||
BL01987___yng 245 CGGGTGCTGTACTAGTCACAGCCAACACGAACTATCAATTATCA-GAGCT 293
BSNT_03020___ 294 GGACTACTTGTTAAAGCAATCGGATGCCGCCGCGCTTATTATCATGGATT 343
.||.||..||.|.||.||.||.||||||.|..|.||.|||.|.|||||.|
BL01987___yng 294 TGAATATGTGCTGAAACAGTCAGATGCCACAACACTCATTTTAATGGAAT 343
BSNT_03020___ 344 CATACAGGGGCACTTCTTATCCA--GACATC----GTAAACAGTTTAATT 387
|||||.||||||||||.|| || ||.||| |.|||| |.|||
BL01987___yng 344 CATACCGGGGCACTTCCTA--CATTGATATCCTTTGCAAAC----TGATT 387
BSNT_03020___ 388 CCAGAACTGCAAGAA--GCAAAGCCCGGCCA-ACTGAAATCTGAACGCTA 434
||.||| |..|||.| ||.|| ||||.|| .||...|||||||.| |
BL01987___yng 388 CCTGAA-TTAAAGGAGGGCGAA--CCGGGCAGGCTTGCATCTGAAAG--A 432
BSNT_03020___ 435 -TCCCTTT-TTAAAAACGCTGATCTATATT---------GGCAATAAACG 473
|.||||| ||||||| ||||| ||..||.||.|
BL01987___yng 433 CTGCCTTTCTTAAAAA---------ATATTATTTTGCTGGGGGATCAAAG 473
BSNT_03020___ 474 GTTGGCTGGCATGTATCATTGGGACGAGACAGAGATATTGGCGAAAA--- 520
|....|.||||||||.|..||||| .||..|||| |||
BL01987___yng 474 GCATCCCGGCATGTACCTATGGGA------TGATTTATT-----AAAGCT 512
BSNT_03020___ 521 --CAGTGACAG-ATGCTGA------GCTTGAAGAGAGAAT-GAACAGCCT 560
|||.|.||| |.|| || ||||||....||.|| ||||
BL01987___yng 513 CTCAGGGTCAGTAAGC-GAAAAAGCGCTTGATCGCAGGATGGAAC----- 556
BSNT_03020___ 561 GGAT-AAAGA-CA--ATGTGATTAATATGCAATACACATCAGGAACGACA 606
||.| ||||| || ||||.||||||||||||||.||||||||.||||||
BL01987___yng 557 GGCTCAAAGAGCATGATGTCATTAATATGCAATATACATCAGGTACGACA 606
BSNT_03020___ 607 GGGTTTCCAAAAGGCGTGATGCTGACCCATTTCAA--TGTCATCAATAAC 654
||.|||||.||||||||||||||.|||||||.||| ||.|| ||.||.
BL01987___yng 607 GGCTTTCCGAAAGGCGTGATGCTCACCCATTCCAATTTGGCA--AACAAT 654
BSNT_03020___ 655 GCTGCTAATATCGCTGAATGTATGGCTTTAACCTCTC-----AAGACCGC 699
||.||.|||||.||.|||||.|||..|||| || |||||.|.
BL01987___yng 655 GCGGCAAATATTGCGGAATGCATGAATTTA-----TCGAAAAAAGACAGA 699
BSNT_03020___ 700 ATGTGCATCCCGGTTCCGTTTTTTCACTGCTTTGGATGCGTCCTTGGGGT 749
|||||||||||.|||||||||||.||||||||.||.||.||.||.|||..
BL01987___yng 700 ATGTGCATCCCCGTTCCGTTTTTCCACTGCTTCGGCTGTGTACTGGGGAC 749
BSNT_03020___ 750 TTTGGCATGTGTATCCGTCGGGGCAGCCATGATACCCGTGCAAGAATTTG 799
|.|.||.||.||..|||.|||.||..|.|||.|.||.||.||||||||
BL01987___yng 750 TCTCGCTTGCGTCACCGCCGGCGCGACGATGGTGCCGGTACAAGAATT-- 797
BSNT_03020___ 800 ATCCCGTTACC-------GTCCTTAAAACGGTAGAAAAAGAGAAATGCAC 842
|.|| || ||.|||..|.|.||.||||..||.||||||||
BL01987___yng 798 ---CAGT--CCGAAAGAAGTGCTTTCAGCCGTCGAAACGGAAAAATGCAC 842
BSNT_03020___ 843 AGCGCTCCATGGTGTGCCTACCATGTTTATCGCTGAGCTGCATCATCCGG 892
.|||||.||.|||||.||.||||||||.|||||.||.|||.||.||||.|
BL01987___yng 843 GGCGCTTCACGGTGTACCGACCATGTTCATCGCCGAACTGAATGATCCAG 892
BSNT_03020___ 893 ATTTTG-ATGCATATGATCTATCGACGCTCCGAACAGGAATCATGGCCGG 941
||||.| || |||||||.||.||..|..|..||||.||.|||||||||||
BL01987___yng 893 ATTTCGCAT-CATATGACCTGTCTTCTTTAAGAACGGGCATCATGGCCGG 941
BSNT_03020___ 942 CTCTCCCTGTCCAAGTGAAGTGATGAAAGCTGTGATTGAAAGGATGGGCA 991
.||...||||||.|..|||||.||||||...|||||.||.|..|||||.|
BL01987___yng 942 TTCAAACTGTCCGATCGAAGTCATGAAAAAAGTGATCGATAACATGGGGA 991
BSNT_03020___ 992 TGAAAGACATTACGATCGCCTATGGACAAACCGAAGCCTCGCCAGTCATT 1041
||...||.||.|||||.||.||.|||||.||.||||||||.||.||||||
BL01987___yng 992 TGTCTGAAATAACGATTGCATACGGACAGACGGAAGCCTCACCGGTCATT 1041
BSNT_03020___ 1042 ACGCAAACGAGAGCAAATGATTCCTTCATAAGAAGAGTCGAAACAACCGG 1091
||.||.||.||.|..||.|||||..|||.||||||.||||||||....||
BL01987___yng 1042 ACCCAGACTAGGGTCAACGATTCGCTCAAAAGAAGGGTCGAAACCGTAGG 1091
BSNT_03020___ 1092 CCGCGCCCTGCCACATACTGAGGTGAAAATTGTAGAACCTGGGACATGTC 1141
.|||||..||||..||...||.||.|||||....|||||.||.|| .
BL01987___yng 1092 GCGCGCTTTGCCGAATGTAGAAGTCAAAATAACTGAACCGGGTAC----G 1137
BSNT_03020___ 1142 AA----GAAGTTCAAAGAGGCATGCAGGGAGAGCTGTGCACCCGTGGCTA 1187
|| ||.|||.||||||||.|.||.||.|||||||||||.||.|||||
BL01987___yng 1138 AACCGGGAGGTTGAAAGAGGCGTTCAAGGCGAGCTGTGCACACGCGGCTA 1187
BSNT_03020___ 1188 TCACGTCATGAAAGGCTATTATAAAGACAAA----GAAGCGAC--CAGAA 1231
.||.||.|||||||||||.||.|| ||| ||.||.|| |
BL01987___yng 1188 CCATGTTATGAAAGGCTACTACAA----AAATCCTGAGGCCACGGC---- 1229
BSNT_03020___ 1232 AAGCAATCAATC-ATGACGGATGGCTGTT----TACCGGAGATCTTGCTG 1276
|||..|| ||| |||| ||||||.|.|| |||.||||||.|.||.|
BL01987___yng 1230 -AGCGGTC-ATCGATGA-GGATGGATTTTTGCATACGGGAGATTTAGCCG 1276
BSNT_03020___ 1277 TCATGGATGAAGACGGATACTGCCGCATCACCGGAAGATTAAAAGATATG 1326
|.|||||||||||.||.||||||||.||.|||||.|||||||||||.|||
BL01987___yng 1277 TAATGGATGAAGAAGGCTACTGCCGGATTACCGGGAGATTAAAAGACATG 1326
BSNT_03020___ 1327 CTCATCAGAGGCGGCGAGAACATTTATCCGCGGGAAATTGAAGAATTTTT 1376
.|||||||||||||.||.|||||.||||||||||||||.|||||.|||||
BL01987___yng 1327 ATCATCAGAGGCGGTGAAAACATATATCCGCGGGAAATAGAAGAGTTTTT 1376
BSNT_03020___ 1377 ATACCGGCATCCCGCTGTTTTAGATGTACAGGTCGTTGGTGTGCCTGACG 1426
||||..||||||||...||.|.||.||.||..|.||.||.||||||||||
BL01987___yng 1377 ATACAAGCATCCCGACATTCTCGACGTCCAAATTGTCGGAGTGCCTGACG 1426
BSNT_03020___ 1427 CCAAATTCGGGGAGGAAGCTGCAGCCTGGATTAAACTGAAAGACGGTAAA 1476
..|.||||||.||.||.|...|.||||||||.|||||||||..|||
BL01987___yng 1427 AAACATTCGGCGAAGAGGTATCGGCCTGGATCAAACTGAAAAGCGG---- 1472
BSNT_03020___ 1477 AGCGT--TTCAC--CTGATGAGCTTAAAGCCTATTGCAAAGGGAAAATCG 1522
|||.| .|.|| ||||.||..|.||||..||.||||||||.|||||||
BL01987___yng 1473 AGCATCGATGACGGCTGACGAATTAAAAGAATACTGCAAAGGCAAAATCG 1522
BSNT_03020___ 1523 CCCGCCACAAAATTCCGCGTTATGT--TATTTTTACGGATGACTATCCGA 1570
|||||.|.||.||||||||.|||.| .||||.|| ||.||.|..||||
BL01987___yng 1523 CCCGCTATAAGATTCCGCGCTATATCGCATTTGTA--GAAGAGTTCCCGA 1570
BSNT_03020___ 1571 TGACGGCCTCAGGCAAAATTCAAAAATATAAACTGCGAGAAAAAACGATT 1620
|||||||.|||||.|||.|.|||||||..||..|..|.||..|..||.||
BL01987___yng 1571 TGACGGCATCAGGGAAAGTGCAAAAATTCAAGTTAAGGGAGCAGGCGCTT 1620
BSNT_03020___ 1621 GA-AATGTTCAACCTATCATCAAGTCAATGA 1650
|| .||.||||| .|.|.|
BL01987___yng 1621 GAGCATTTTCAA-TTGTAA------------ 1638
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