Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03021 and BL01986
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:43
# Commandline: needle
# -asequence dna-align/BSNT_03021___yngJ.1.5803.seq
# -bsequence dna-align/BL01986___yngJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03021___yngJ-BL01986___yngJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03021___yngJ-BL01986___yngJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03021___yngJ
# 2: BL01986___yngJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1197
# Identity: 870/1197 (72.7%)
# Similarity: 870/1197 (72.7%)
# Gaps: 90/1197 ( 7.5%)
# Score: 3034.0
#
#
#=======================================
BSNT_03021___ 1 GTGAATTTTGAGCTGACAAAAGAACAACAAATGGTGCGTGAAATGGTAAA 50
.||||||||||.||.||.|.||||||.||||||.|.||||||.|.|.||.
BL01986___yng 1 ATGAATTTTGAACTAACCAGAGAACAGCAAATGATTCGTGAACTCGCAAG 50
BSNT_03021___ 51 AGATTTTGCGAAAAAAGAAATTGCTCCTCACGCTGAACATGTAGATCA-A 99
|||||||||||||.|.||||||||.||.|||||.||||||||.|| || .
BL01986___yng 51 AGATTTTGCGAAACAGGAAATTGCACCGCACGCCGAACATGTTGA-CAGG 99
BSNT_03021___ 100 ACAGGCGAGTTCCCGATGCAAACATTTGAAAAAATGGGTGAACTCGGTCT 149
||.||.||.||.|||||..|.||||||.||||||||||.||.|||||.||
BL01986___yng 100 ACGGGAGAATTTCCGATTGAGACATTTAAAAAAATGGGGGAGCTCGGCCT 149
BSNT_03021___ 150 GATGGGTATTCCATTTCCAGAAGAATATGGCGGATCTGGCGGTGATACGA 199
..||||.|||||.|||||.|||...||.|||||.||.|||||.|||||||
BL01986___yng 150 CTTGGGGATTCCGTTTCCTGAAAGCTACGGCGGTTCAGGCGGAGATACGA 199
BSNT_03021___ 200 TTTCATATGC-CTTAGCGGTTGAAGAAGTCGGCAAAGCCTGCGGCAGTAC 248
||||.||||| |||||| ||.||||||.||||||||||.|||||.||.||
BL01986___yng 200 TTTCCTATGCACTTAGC-GTCGAAGAAATCGGCAAAGCGTGCGGAAGCAC 248
BSNT_03021___ 249 TGGATTAAGCTATGCTGCAGCGGTCTCGCTAGGCGCAAGC-CCTCTTTAC 297
.||..|.|||||||||||.||.||.|||||.||.|| .|| ||..||||.
BL01986___yng 249 CGGTCTTAGCTATGCTGCGGCTGTATCGCTCGGGGC-TGCGCCGATTTAT 297
BSNT_03021___ 298 TACTTCGGAACAGAAGAGCAAAAAC-AGACGCATTTGACG--CCGCTGGC 344
||.|||||.||.|||||.||||||| ||| ||.|..|| |||||.||
BL01986___yng 298 TATTTCGGCACTGAAGAACAAAAACAAGA---ATATCTCGTCCCGCTTGC 344
BSNT_03021___ 345 TTCAGGCACAGCACTCGGATCATTCGGCCTGACGGAGCCAAATGCCGGCT 394
..|.|||...||.||||||.||||.||.|||||.||.||.|||||.||.|
BL01986___yng 345 GACGGGCCGGGCGCTCGGAGCATTTGGGCTGACCGAACCGAATGCAGGTT 394
BSNT_03021___ 395 CAGATGCAGGAGGCACTCAAACAAAAGCGATTTCAAATGGTGACGAG-TA 443
|.|||||.||.|||||.|..||||||||....||..|.||.||| || ||
BL01986___yng 395 CCGATGCGGGCGGCACCCGGACAAAAGCCCGCTCGGAAGGGGAC-AGCTA 443
BSNT_03021___ 444 TGTAATCAACGGCGAAAAGTGCTGGATCACTAATGCAAGCTACGCACGCA 493
|||.||||.|||.||.||.|||||||||||.||||||.|.|..||..|.|
BL01986___yng 444 TGTGATCAGCGGTGAGAAATGCTGGATCACAAATGCAGGATTTGCCAGGA 493
BSNT_03021___ 494 CAGTTATTGTAACCGCCGTAACAGGCAAAA----ACAAAGACGGAAAAAA 539
|.||.||.||.||||||||.||.|| ||.| ||| ||||||||||
BL01986___yng 494 CCGTCATCGTCACCGCCGTCACCGG-AATAGATGACA---ACGGAAAAAA 539
BSNT_03021___ 540 CATCATCTCCGCATTAATCGTGCCAACTGACACACCAGGACTT-ACGATT 588
||||||.|||||..|.|||||.||.||.||..| ..|||.||| ||.|||
BL01986___yng 540 CATCATTTCCGCCATCATCGTTCCGACAGATTC-GGAGGGCTTCACCATT 588
BSNT_03021___ 589 ACGAGCCCGTACGATAAAATGGGCGTCCGCGGTTCGAATACAGC---GGA 635
|..|||...||.||.||||||||.||||||||.||.||||||.| |..
BL01986___yng 589 AAAAGCGAATATGACAAAATGGGTGTCCGCGGCTCCAATACATCACAGCT 638
BSNT_03021___ 636 AATTTTGCTTGAGGATGTAAGAGTGCCTGCG-GCCAA--------CTTAC 676
.||.||| ||..|||| |.||| .|||| || .
BL01986___yng 639 CATATTG---GACAATGT--------CCGCGTACCAAAACAAAATCT--A 675
BSNT_03021___ 677 TTGGCGATCCAAC---AAAAGGGTTTAAACAGTTTCTATATACGCTGGAC 723
||||..|.|| | |||||||||||||||.|||||..||||.||.|||
BL01986___yng 676 TTGGGAAGCC--CGGAAAAAGGGTTTAAACAATTTCTCAATACACTTGAC 723
BSNT_03021___ 724 GGAGGGCGAATCTCCATCGCTGCTCTTGCAGTCGGCATTGCCCAAGCGGC 773
||.||..||||.||.|||||.||.||.||.|||||.||||||||||..||
BL01986___yng 724 GGCGGCAGAATTTCGATCGCAGCGCTGGCTGTCGGTATTGCCCAAGGCGC 773
BSNT_03021___ 774 CCTTGA-----CGCATCATTGGCATATGCGAAAGAACGAAAGCAGTTTGG 818
..|||| ||| ||| ||||.|||...||||||||.||.||.||
BL01986___yng 774 ATTTGAGGCGGCGC-TCA----CATACGCGCGCGAACGAAAACAATTCGG 818
BSNT_03021___ 819 ACAGCCGATTTCTTCCTTTCAAGCGATTCAATTTAAGCTTGCTGACATGG 868
.|..|||||.||||..||.||.||||||||.||.||||||||.|||||||
BL01986___yng 819 CCGACCGATCTCTTATTTCCAGGCGATTCAGTTCAAGCTTGCCGACATGG 868
BSNT_03021___ 869 CGATGGAAATTGATCTGGCACGGCAA-ATGGTGTTAAAAGCCGCCTGGCT 917
|.|||||||||||.||.|| |.|||| ||||||.|.||.|||||||||||
BL01986___yng 869 CCATGGAAATTGAGCTCGC-CCGCAATATGGTGCTGAAGGCCGCCTGGCT 917
BSNT_03021___ 918 GAAAGACCATAACCAC--CCGTTCACCAAAGAAGCGGCGTACGCCAAGCT 965
||||||.| ||..|| |||||.||.|||||||||||.|..||||||||
BL01986___yng 918 GAAAGATC--AAGGACGTCCGTTTACAAAAGAAGCGGCTTTTGCCAAGCT 965
BSNT_03021___ 966 ATTCGCATCTGAAATGGCG-ACAAGAGCTTGCAATCAAGCCATTCAAATC 1014
.|..||.||.||||||||| .||.|| |.||||||||..||||||||||.
BL01986___yng 966 TTATGCCTCAGAAATGGCGTTCAGGA-CATGCAATCAGTCCATTCAAATA 1014
BSNT_03021___ 1015 CATGGAGGTTCAGGCTATATGAAAGAGTATGGGGTGGAACGGATGCTGCG 1064
||.|||||.|..||.|||||||||||||||||.|||||.||.||||||||
BL01986___yng 1015 CACGGAGGATACGGGTATATGAAAGAGTATGGAGTGGAGCGCATGCTGCG 1064
BSNT_03021___ 1065 GGATGCAAAATTAATGGAAATCGGTGAAGGCACATCTGAAATTCAGCGTC 1114
|||.|||||||||||||||||||||||||||||.||.||||||||.||.|
BL01986___yng 1065 GGACGCAAAATTAATGGAAATCGGTGAAGGCACTTCAGAAATTCAACGGC 1114
BSNT_03021___ 1115 TCGTGATCGCCAGACAGCT------------------TTTAAAATAA 1143
||||.|||||.||.||||| ..|.||||.|
BL01986___yng 1115 TCGTCATCGCAAGGCAGCTCGGCATCGGCAAACAAGCGCTGAAATGA 1161
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