Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01222 and BL01981
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:44
# Commandline: needle
# -asequence dna-align/BSNT_01222___yetF.1.5803.seq
# -bsequence dna-align/BL01981___yetF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01222___yetF-BL01981___yetF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01222___yetF-BL01981___yetF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01222___yetF
# 2: BL01981___yetF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 778
# Identity: 450/778 (57.8%)
# Similarity: 450/778 (57.8%)
# Gaps: 182/778 (23.4%)
# Score: 1166.5
#
#
#=======================================
BSNT_01222___ 1 ATGGGAAATTATTTA-AGTGTTGCGGTAGAACT--------GGTCTGCGG 41
|||| |.|||.|| |.| |.|..||.||||| |||.|||
BL01981___yet 1 ATGG---AATATGTACACT-TGGTAGTCGAACTGACGATAGGGTTTGC-- 44
BSNT_01222___ 42 TTTAGGCATTTTATTTATCAT--CTTAAAGCTTCTCGGGAAAACCCAATT 89
.||| ||.|||.|.|| |..||| ||||.||.|||||||||||
BL01981___yet 45 ----AGCA--TTGTTTCTGATGACGAAAA--TTCTGGGAAAAACCCAATT 86
BSNT_01222___ 90 TTCTCAAATTACGCCGTTTGACTTTATCTCTGCTTTAATTTTAGGAGAAT 139
|.|.|||||||||||||||||.|||||.||.||||||||.||.||.||..
BL01981___yet 87 TGCCCAAATTACGCCGTTTGATTTTATTTCGGCTTTAATATTGGGCGAGA 136
BSNT_01222___ 140 TGGTCGGAAATGCCGTTTACGATCATGAAATCAAAATCAAAGAAATTATT 189
||||.|||||.||..|||.||||.|.||..|||..|||....||||..||
BL01981___yet 137 TGGTTGGAAACGCGATTTTCGATGAGGATGTCACCATCTGGAAAATCCTT 186
BSNT_01222___ 190 TTTGCTTCGCTAT-----TGTGGGGCGTGCTGATTTATATTATTGAA--T 232
|||||.|| |.||||.|||.||.||.|||...||.||| |
BL01981___yet 187 -----TTCGCCATCCTCATTTGGGCCGTTCTAATCTATTCAATAGAAGTT 231
BSNT_01222___ 233 TTATCACGCAAAAAATG-AAATCATCGCGAAAG---TTCTTGGAGGGCGA 278
|||| ||||||||.|| |||.|||| |.|| ||| |.||.|||..
BL01981___yet 232 TTAT--CGCAAAAAGTGCAAAACATC---AGAGGTTTTC-TCGAAGGCAG 275
BSNT_01222___ 279 GCCGAATATCGTCATCCGCAAAGGGGA----GCTT-CAA-----TATAAA 318
|||||..||.||||||...|||||..| |.|| ||| | ||||
BL01981___yet 276 GCCGAGCATTGTCATCAATAAAGGAAAAATCGATTACAACGCCCT-TAAA 324
BSNT_01222___ 319 GTATTGAAGAA-AAATAAGATGGACATTAACCAGCTGCAAAGCCTTTTGA 367
||||| |||| |||||.|.|||||||||| ||.|.||
BL01981___yet 325 ------AAGAACAAAT----TGGACCTGAACCAGCTGC--AGACATT--- 359
BSNT_01222___ 368 GGCAAGCG-----GGGAGCTTTTCGATTCAAGAAGTAGAATATGCGATTT 412
||||.|.| ||..|.|||||..|.||.||..|..||||.||.||.|
BL01981___yet 360 GGCACGTGAAAAAGGCTGTTTTTCCTTACACGAGATCCAATACGCCATCT 409
BSNT_01222___ 413 TGGAAACAAACGGGATGGTCAGTGTGCTTCCAAAATCCGACTTTGACAAA 462
||||||||.||||...|.||||.||.||.|||||| .|||||
BL01981___yet 410 TGGAAACAGACGGTTCGATCAGCGTCCTCCCAAAA---------CACAAA 450
BSNT_01222___ 463 ---------CCGACCAATAAGGATTTGCAGATTCCTTCGAAGTCTGTT-- 501
|||||.||..|.||.||..|.|||||||..||..|.|||
BL01981___yet 451 TACGGGATGCCGACAAAAGATGACTTAAACATTCCTTACAAACCGGTTCA 500
BSNT_01222___ 502 --TCCC--TGCCGATCACTTTAATCATAGATGGAGAGATTGTCCG----G 543
|||| ||||| .|||||.|.||.||..||.| || |
BL01981___yet 501 GCTCCCGGTGCCG------GTAATCCTCGACGGCCAGCT----CGAAAAG 540
BSNT_01222___ 544 GATAATCTGAAGGAAGCAGGTGTGGATGAACAGTGGCTGAAGCAAGAATT 593
.|.||||||.|.|||||.||..|.|||||.|..||||| |||| |||
BL01981___yet 541 AACAATCTGCACGAAGCCGGATTTGATGAGCTTTGGCT---GCAA-AAT- 585
BSNT_01222___ 594 GAAAAAGAAGAACATTGAT-AAGACGG----------------AGGACGT 626
||.|.|| |||.|.| |.||.||
BL01981___yet 586 ------------CAATTATCAAGTCAGGGTATCACTCAGTATCAAGAGGT 623
BSNT_01222___ 627 GTTATTTGCAGAATGGCATAAAAATAAGCCGCTGT-AT-------ACCGT 668
|.|.|.|||.|||||| |||.|| || |.|.|
BL01981___yet 624 GCTGTATGCGGAATGG-------------CGCGGTGATGAGGGGCAGCTT 660
BSNT_01222___ 669 AACATACGAACAAAGCAGATCAACATGA 696
.|||| ||.|.||.|| |||
BL01981___yet 661 TACAT-----CACAACATAT-----TGA 678
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