Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06132 and BL01959
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:07
# Commandline: needle
# -asequence dna-align/BSNT_06132___yxaF.1.5803.seq
# -bsequence dna-align/BL01959___yxaF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06132___yxaF-BL01959___yxaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06132___yxaF-BL01959___yxaF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06132___yxaF
# 2: BL01959___yxaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 671
# Identity: 360/671 (53.7%)
# Similarity: 360/671 (53.7%)
# Gaps: 187/671 (27.9%)
# Score: 767.5
#
#
#=======================================
BSNT_06132___ 1 ATGACTAGCAGAGGAGAT--TCA--CGTGAAAAAATCCTTCACACGGCGT 46
||| |||||..|.|| .|| ||.||.|||||..|.|..|||||.|
BL01959___yxa 1 ATG----GCAGAAAAAATGAGCAGCCGCGACAAAATTTTGCGGACGGCTT 46
BSNT_06132___ 47 CACGTCTGTTCCAGC-TGCAAGGATATCACGCGACAGGTTTGAACCAGAT 95
||||..|||||| || ..|||||.||.||.||.|||||.||.|.|||.||
BL01959___yxa 47 CACGATTGTTCC-GCAAACAAGGCTACCATGCCACAGGCTTAAGCCAAAT 95
BSNT_06132___ 96 TGTAAAAGAAAGCGGTGCTCCTAAGGGATCGCTTTATCACTTTTTTCCGA 145
...|...||||||||.||.||...|||||||||||||.|.|.|||.||..
BL01959___yxa 96 CACAGCCGAAAGCGGAGCGCCGCGGGGATCGCTTTATTATTATTTCCCCG 145
BSNT_06132___ 146 ATGGCAAAGAAGAATT--AGCAATTGAAGCGGTTACATATACAGG----- 188
..||||||||.|||.| .|||| ||.|||.||..||..||.||
BL01959___yxa 146 GCGGCAAAGAGGAACTGGCGCAA--GAGGCGATTCAATTAACCGGAGAAA 193
BSNT_06132___ 189 ---TAAGATCGTTGAACATCTGATA----CAGCAA--AGCATGGATGAAT 229
|.|.|.||| || ||| ||||.| ||| |.||||
BL01959___yxa 194 GAATCAAAGCGT-----AT---ATATCGTCAGCGATCAGC---GGTGAA- 231
BSNT_06132___ 230 CCTCTGATCC-AACAGAAGCGATTCAGCTTTTTATCAAAAAAACAGCCAG 278
.||||||| ..|| |.|||.||||...||.||||.|.|
BL01959___yxa 232 --GCTGATCCTGTCA-AGGCGTTTCAATCTTATATCCAGA---------- 268
BSNT_06132___ 279 CCAATTTGAT-----------------AACAC--------AGAAAGCATT 303
|||| ||.|| |||||.|
BL01959___yxa 269 ------TGATGGCTGACGGAATCGAGGAATACATCATCGAAGAAAAC--- 309
BSNT_06132___ 304 AAAGGTATTCCAGTCGGT-----TTGCTGGCGA---GTGAGACAG-CGTT 344
.|.|.||||||..|| || |.||.|..|| ||| | |||
BL01959___yxa 310 GACGATATTCCGATC-GTATCCGTCGCCGCAGAAACGTG-----GTCGT- 352
BSNT_06132___ 345 AATCAGTGAACCGCTGCG---GACGGTTTGCATGA--AGGTGTTTAAAAG 389
||||||||..|||.|| .||| || ||| ||||.|.|.||..
BL01959___yxa 353 --TCAGTGAAAGGCTCCGCCAAACG---TG--TGAACAGGTTTATCAAGA 395
BSNT_06132___ 390 CTGGGAAGCGGTT-TTTGCCAG--AAAATT-------------AATG--- 420
||||.| |.|| |.|..||| ||||.| .|||
BL01959___yxa 396 CTGGCA---GCTTGTCTATCAGGAAAAACTGCTCCAGTCAGGCTATGCGC 442
BSNT_06132___ 421 -GAAAACGGATTTGCAGATGAAGAAGCAAATCAGCTTGGAACGCTGATTA 469
|.||||| ||.| |||.|| |.|||.| ||| |||..
BL01959___yxa 443 CGGAAACG-----GCCG----AGACGC---TGAGCGT----CGC-GATAC 475
BSNT_06132___ 470 ATTCGATGATTGAGGGCG-GCATCATGCTTTCGTTAACGAATAAAGACAA 518
|..|||||||||||||.| |.|| .||||.||..|.||||| |.||
BL01959___yxa 476 AAGCGATGATTGAGGGTGCGTAT-GTGCTCTCAGTGACGAA-----AAAA 519
BSNT_06132___ 519 AACGCCTCTTCTTCTCATT------GCCGAACAAATACCAGTGCTGGTGA 562
||||.| |..|.|||||.| |||||||||||.||..|..||.|
BL01959___yxa 520 AACGGC-CGGCCTCTCAGTGCAGCCGCCGAACAAATTCCTTTTTTGCT-- 566
BSNT_06132___ 563 GAAAA-------AAAGGGTAG 576
|||| ||
BL01959___yxa 567 -AAAACGTTCATAA------- 579
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