Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06260 and BL01952
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:13
# Commandline: needle
# -asequence dna-align/BSNT_06260___yyaH.1.5803.seq
# -bsequence dna-align/BL01952___yyaH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06260___yyaH-BL01952___yyaH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06260___yyaH-BL01952___yyaH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06260___yyaH
# 2: BL01952___yyaH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 424
# Identity: 244/424 (57.5%)
# Similarity: 244/424 (57.5%)
# Gaps: 92/424 (21.7%)
# Score: 603.5
#
#
#=======================================
BSNT_06260___ 1 TTGAATAT---ACATACAGCGATCTGGGTCAAAGATTTAGAGCGAATGAA 47
.||||.|| |||.|..||.||.|||...||..||||||||..||||||
BL01952___yya 1 ATGAAAATCGAACACATCGCCATATGGACGAACAATTTAGAGGAAATGAA 50
BSNT_06260___ 48 GGCTTTTTA----CGAAACGTATTTTAACGGCAAAG-CGAATG----ATT 88
.|.|||.|| || .|.||||.|||| |||| |||||| ||.
BL01952___yya 51 AGATTTCTATACCCG----TTTTTTTCACGG-AAAGACGAATGAAAAATA 95
BSNT_06260___ 89 TGTACCATAATGAGAAAAAAGATTTTAAGTCTTATTTTATTACGTTTGAT 138
||| .|||..||||||..||||..|.||.|||||.||...||||||.
BL01952___yya 96 TGT----CAATCCGAAAAAGCATTTCGAATCATATTTCATCCAGTTTGAA 141
BSNT_06260___ 139 TCCGGAGGAAGGCTGGAAATGATGA---------------AAAAAGGAAA 173
||.|||..|.||||.||..|||||| .|||||||.|
BL01952___yya 142 TCGGGAACACGGCTTGAGCTGATGAGACGCCCCGACCTTGCAAAAGGAGA 191
BSNT_06260___ 174 TGTGACTGATCCGCCTTCACCAACGATGACAGGCTGGGCCCATATTGCCT 223
.|.| ||||.| .|.||||..||.|||||.||.|
BL01952___yya 192 GGAG-----------------AACGCT-TCCGGCTATGCACATATGGCGT 223
BSNT_06260___ 224 TTTCTGTT--GGAAGCCGGAAGAAGGTTGATGAACTGACTGATCGA---- 267
|||| .|| ||..||.|.||| |||||||.||..||| |||
BL01952___yya 224 TTTC-CTTAGGGTCGCGGCAAG-AGGTTGACGAGATGA-----CGAGCCG 266
BSNT_06260___ 268 --TTGAA---GAAGGAT----GGTTTCGCAGTAGTAAACGGCCCAAGGAC 308
||||| ||||||| |||| ||.| |.||.|.||.| |.|
BL01952___yya 267 CTTTGAAAAGGAAGGATACCAGGTT--GCCG--GAAAGCCGCGC---GTC 309
BSNT_06260___ 309 AACTGGAGATGGCTACTATGAAAGTGTGCTTGAAGATGATGAAGGAAA-- 356
||.|||||.||.||.||||||||.||..||...|||..|||.||.||
BL01952___yya 310 -ACGGGAGACGGGTATTATGAAAGAGTCATTCTGGATCCTGACGGCAACA 358
BSNT_06260___ 357 --TTTGATCGAGATTACAATCTGA 378
.||||.| |.||..|.|||
BL01952___yya 359 TCGTTGAAC----TGACCGTTTGA 378
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