Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06260 and BL01952

See Amino acid alignment / Visit BSNT_06260 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:13
# Commandline: needle
#    -asequence dna-align/BSNT_06260___yyaH.1.5803.seq
#    -bsequence dna-align/BL01952___yyaH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06260___yyaH-BL01952___yyaH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06260___yyaH-BL01952___yyaH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06260___yyaH
# 2: BL01952___yyaH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 424
# Identity:     244/424 (57.5%)
# Similarity:   244/424 (57.5%)
# Gaps:          92/424 (21.7%)
# Score: 603.5
# 
#
#=======================================

BSNT_06260___      1 TTGAATAT---ACATACAGCGATCTGGGTCAAAGATTTAGAGCGAATGAA     47
                     .||||.||   |||.|..||.||.|||...||..||||||||..||||||
BL01952___yya      1 ATGAAAATCGAACACATCGCCATATGGACGAACAATTTAGAGGAAATGAA     50

BSNT_06260___     48 GGCTTTTTA----CGAAACGTATTTTAACGGCAAAG-CGAATG----ATT     88
                     .|.|||.||    ||    .|.||||.|||| |||| ||||||    ||.
BL01952___yya     51 AGATTTCTATACCCG----TTTTTTTCACGG-AAAGACGAATGAAAAATA     95

BSNT_06260___     89 TGTACCATAATGAGAAAAAAGATTTTAAGTCTTATTTTATTACGTTTGAT    138
                     |||    .|||..||||||..||||..|.||.|||||.||...||||||.
BL01952___yya     96 TGT----CAATCCGAAAAAGCATTTCGAATCATATTTCATCCAGTTTGAA    141

BSNT_06260___    139 TCCGGAGGAAGGCTGGAAATGATGA---------------AAAAAGGAAA    173
                     ||.|||..|.||||.||..||||||               .|||||||.|
BL01952___yya    142 TCGGGAACACGGCTTGAGCTGATGAGACGCCCCGACCTTGCAAAAGGAGA    191

BSNT_06260___    174 TGTGACTGATCCGCCTTCACCAACGATGACAGGCTGGGCCCATATTGCCT    223
                     .|.|                 ||||.| .|.||||..||.|||||.||.|
BL01952___yya    192 GGAG-----------------AACGCT-TCCGGCTATGCACATATGGCGT    223

BSNT_06260___    224 TTTCTGTT--GGAAGCCGGAAGAAGGTTGATGAACTGACTGATCGA----    267
                     |||| .||  ||..||.|.||| |||||||.||..|||     |||    
BL01952___yya    224 TTTC-CTTAGGGTCGCGGCAAG-AGGTTGACGAGATGA-----CGAGCCG    266

BSNT_06260___    268 --TTGAA---GAAGGAT----GGTTTCGCAGTAGTAAACGGCCCAAGGAC    308
                       |||||   |||||||    ||||  ||.|  |.||.|.||.|   |.|
BL01952___yya    267 CTTTGAAAAGGAAGGATACCAGGTT--GCCG--GAAAGCCGCGC---GTC    309

BSNT_06260___    309 AACTGGAGATGGCTACTATGAAAGTGTGCTTGAAGATGATGAAGGAAA--    356
                      ||.|||||.||.||.||||||||.||..||...|||..|||.||.||  
BL01952___yya    310 -ACGGGAGACGGGTATTATGAAAGAGTCATTCTGGATCCTGACGGCAACA    358

BSNT_06260___    357 --TTTGATCGAGATTACAATCTGA    378
                       .||||.|    |.||..|.|||
BL01952___yya    359 TCGTTGAAC----TGACCGTTTGA    378


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