Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04989 and BL01949

See Amino acid alignment / Visit BSNT_04989 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:10
# Commandline: needle
#    -asequence dna-align/BSNT_04989___yvgR.1.5803.seq
#    -bsequence dna-align/BL01949___cysI.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04989___yvgR-BL01949___cysI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04989___yvgR-BL01949___cysI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04989___yvgR
# 2: BL01949___cysI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1875
# Identity:    1410/1875 (75.2%)
# Similarity:  1410/1875 (75.2%)
# Gaps:         102/1875 ( 5.4%)
# Score: 5176.5
# 
#
#=======================================

BSNT_04989___      1 TTGCAACTTCAGGTAATGAACAGTCCGTTTAATCAGGAGCAGGCAGAGCT     50
                     ||||||||||||||||||||||||||.|||||||||||||||||||||||
BL01949___cys      1 TTGCAACTTCAGGTAATGAACAGTCCTTTTAATCAGGAGCAGGCAGAGCT     50

BSNT_04989___     51 CCTTAACCGCCTTCTGCCGACCTTGACCGAATCCCAGAAAATCTGGCTGA    100
                     |||.|||||.||||||||.||.|||||.|.|||.||.|||..||||||||
BL01949___cys     51 CCTCAACCGTCTTCTGCCAACTTTGACGGCATCACAAAAAGCCTGGCTGA    100

BSNT_04989___    101 GCGGATATTTATCCGCT---CAATCTGTTTCCGCCCAAGAAGCTGCGGGT    147
                     ||||.|||.|..|.|||   |||      .|||||   ||.||.||||..
BL01949___cys    101 GCGGTTATCTGGCAGCTGTGCAA------ACCGCC---GATGCCGCGGCG    141

BSNT_04989___    148 GC------------GCCGGCGGCAGCTGTGTCTGC-GGAAGCACCGGCAC    184
                     ||            ||||||||.||||   .|||| |.|||| |||||.|
BL01949___cys    142 GCTCTTGAAACATTGCCGGCGGAAGCT---CCTGCTGCAAGC-CCGGCTC    187

BSNT_04989___    185 CGGCCGTTTCAAAAGAAGTGACCGTTCTTTAT--GGTTCACAGACGGGAA    232
                     .|.|.|||||.||||||||||||.|  |||||  ||.||.|||||.||||
BL01949___cys    188 AGCCTGTTTCCAAAGAAGTGACCAT--TTTATTCGGATCGCAGACAGGAA    235

BSNT_04989___    233 ACGCACAGGGGCTTGCAGAAAATGCCGGC-AAGCAGCTTGAACAGA--GC    279
                     |.||||||||.|||||.|||||.| |||| |||..||||  |||||  |.
BL01949___cys    236 ATGCACAGGGACTTGCCGAAAACG-CGGCTAAGACGCTT--ACAGAACGG    282

BSNT_04989___    280 GGTTTTCAAGTGACCGTCTCATCCATGAGCGATTTTAAGCCGAATCAGCT    329
                     ||.||||||||.||||||||.||.||||||||||||||||||||.||..|
BL01949___cys    283 GGATTTCAAGTCACCGTCTCTTCAATGAGCGATTTTAAGCCGAACCAATT    332

BSNT_04989___    330 GAAGAAGGTAACCAATCTTTTAATCGTCGTCAGTACTCATGGAGAAGGCG    379
                     ||||||..|||..||.|||.|.|||||||||||.||.||.||.|||||.|
BL01949___cys    333 GAAGAAACTAAAAAACCTTCTCATCGTCGTCAGCACGCACGGTGAAGGGG    382

BSNT_04989___    380 AGCCGCCTGATAACGCGCTGTCGTTTCACGAATTTCTGCACGGAAGACGG    429
                     |.|||||.||.|||||||||||.||.||.||.|||||.||.|||||||||
BL01949___cys    383 ATCCGCCGGACAACGCGCTGTCATTCCATGAGTTTCTCCATGGAAGACGG    432

BSNT_04989___    430 GCGCCTAAGCTTGAAGATCTGCGTTTTTCCGTTTTGGCGCTTGGTGACAG    479
                     ||.||.|||||.||.|||||.||||.|||.||..||||.|||||.||||.
BL01949___cys    433 GCTCCGAAGCTCGATGATCTCCGTTATTCTGTGCTGGCTCTTGGCGACAC    482

BSNT_04989___    480 TTCGTACGAATTTTTCTGCCAGACAGGGAAAGAATTTGATCAGC-GCTTA    528
                     .|||||.|||||||||||||||||.||.|||||.||.||.|||| |||| 
BL01949___cys    483 GTCGTATGAATTTTTCTGCCAGACCGGAAAAGAGTTCGACCAGCGGCTT-    531

BSNT_04989___    529 GAAGAACTCGGCGGAAAACGGATTTCTCCGCGCGTTGATTGCGATCTTGA    578
                     |..||.||.||.||.|.|.||.|...|||||||||.||.||||||||.||
BL01949___cys    532 GGTGAGCTTGGAGGCACAAGGCTCCATCCGCGCGTCGACTGCGATCTCGA    581

BSNT_04989___    579 CTATGATGAACCGGCAGCCGAATGGCTTGAGGGTGT-AT-TGAAGGGATT    626
                     .||||||||.|||||.||.|.|||||||||.||||| || |.||  |.||
BL01949___cys    582 TTATGATGAGCCGGCTGCAGCATGGCTTGACGGTGTCATCTCAA--GCTT    629

BSNT_04989___    627 AAATGAAG--CTGG----GGGCGGAAGCGCCGCGCCTGCGCCGCCGGCTG    670
                     |||.||||  |.||    |||||.|||||||||.|||||.|...||||.|
BL01949___cys    630 AAACGAAGGACAGGAACAGGGCGCAAGCGCCGCACCTGCTCAAACGGCAG    679

BSNT_04989___    671 CGTCTCAAACCG-GTGAGTCTTCG----------TATTCCAGAACAAACC    709
                     |..|.|||.||| |.|||     |          |||||.||||.|||.|
BL01949___cys    680 CTCCGCAAGCCGCGGGAG-----GAGTAACAGTATATTCGAGAAAAAATC    724

BSNT_04989___    710 CGTTTCGGGCTGAAGTGTTAGAAAATTTAAATTTAAACGGCAGAGGATCA    759
                     ||||..|.||.||||||.|.||||||||.||||||||||||.|.||||||
BL01949___cys    725 CGTTCAGAGCGGAAGTGCTGGAAAATTTGAATTTAAACGGCCGCGGATCA    774

BSNT_04989___    760 AATAAAGAAACACGCCATGTGGAGCTGTCTCTTGAAGGATCAGGCCTGAC    809
                     |||||||||||.||||||.|.||..|.||.||||||||.|||||..||||
BL01949___cys    775 AATAAAGAAACGCGCCATCTTGAATTATCGCTTGAAGGCTCAGGTTTGAC    824

BSNT_04989___    810 TTACGAGCCTGGTGACAGC-CTCGGCGTCTATCCAGAAAACGATCCGGAA    858
                     |||.||.|||||.||| || ||||||.|||.|||.|||||.||.||.|||
BL01949___cys    825 TTATGAACCTGGCGAC-GCGCTCGGCATCTTTCCGGAAAATGACCCTGAA    873

BSNT_04989___    859 CTTGTCGAGCTGCTCCTTAAGGAAATGAATTGGGACCCGGAAGAAATTGT    908
                     ||.|||||..||||.||.||.||..||||.|||||.|||     |||..|
BL01949___cys    874 CTCGTCGATATGCTGCTGAAAGAGCTGAAATGGGATCCG-----AATGCT    918

BSNT_04989___    909 GACGCT--TAATAAGCAAGGTGATGTCCGTCCGCTGAAAGAAGCGCTGAT    956
                     |.||.|  |..|.|.|||||.||...||.|.|..|||||||||||.|||.
BL01949___cys    919 GCCGTTGCTGTTGATCAAGGGGAAAACCTTTCTTTGAAAGAAGCGTTGAC    968

BSNT_04989___    957 TTCTCACTATGAGATTACCGTTCTCACA---AAACCGCTTC-TTGAACAG   1002
                     ||||.|||||||.|||||.||.||.|||   |||    ||| ||.|.|||
BL01949___cys    969 TTCTTACTATGAAATTACGGTGCTGACAAAGAAA----TTCATTCAGCAG   1014

BSNT_04989___   1003 GCAGCCCAGCTGACAGGGAACGATGAGCTTAGAGAGCTTTTAGCCCCGGG   1052
                     ||.||..|..|.|..|..||.||..||||..|.||||||...||.||||.
BL01949___cys   1015 GCGGCAGAAATCATTGAAAATGAAAAGCTGCGCGAGCTTGCCGCTCCGGA   1064

BSNT_04989___   1053 AAATGAGGA-GAATGTAAAAGCCTATATTGAAGGGCGCGATTTGCTTGAT   1101
                     |||||.||| .||| |||||||.|||||.|..||.|||||..||.|||||
BL01949___cys   1065 AAATGCGGATCAAT-TAAAAGCGTATATCGCTGGCCGCGACCTGATTGAT   1113

BSNT_04989___   1102 CTCGTCCGTGACTATGGCCCATTTAGTGTATCTGCGCAGGAGTTTGTCTC   1151
                     .|.||.||.||.|..||.||..|....|.|.||.|||||||.|||||.||
BL01949___cys   1114 TTTGTGCGGGATTTCGGTCCGATCGCAGCAGCTCCGCAGGAATTTGTATC   1163

BSNT_04989___   1152 GATTTTGCGAAAAATGCCTGCC-CGCCTTTATTCGATTGCAAGCAGTTTA   1200
                     ||||.|.|||||||| ||.||| ||.|||||||||||.|||...||.||.
BL01949___cys   1164 GATTCTTCGAAAAAT-CCCGCCTCGGCTTTATTCGATCGCATCGAGCTTC   1212

BSNT_04989___   1201 TCCGCAAATCCGGATGAAGTGCATTTAACAATCGGCGCAGTCCGCTACGA   1250
                     .|.|||||||||||||||||||||||.||.|||||.||.|||||||||.|
BL01949___cys   1213 GCTGCAAATCCGGATGAAGTGCATTTGACGATCGGTGCTGTCCGCTACAA   1262

BSNT_04989___   1251 TGCGCATGGCCGTGAACGAAAAGGCGTCTGCTCGATTTTGTGCGCGGAAC   1300
                     ||||||.|||.|.||.||||||||.|||||||||.|.||.||.||.||||
BL01949___cys   1263 TGCGCACGGCAGAGACCGAAAAGGGGTCTGCTCGGTATTATGTGCCGAAC   1312

BSNT_04989___   1301 GTCTGCAGCCGGGAGACACACTGCCGGTTTATGTACAGCACAATCAAAAC   1350
                     ||||||||||.||.|||||.|||||.||||...|.||||..|||.|||||
BL01949___cys   1313 GTCTGCAGCCTGGCGACACCCTGCCTGTTTTCATTCAGCCGAATAAAAAC   1362

BSNT_04989___   1351 TTTAAGCTTCCGAAAGACCCTGAAACACCGATTATCATGGTGGGCCCTGG   1400
                     ||||||||.|||.|..|.||.||.||.||||||||||||||.|||||.||
BL01949___cys   1363 TTTAAGCTGCCGGAGAATCCGGAGACTCCGATTATCATGGTCGGCCCCGG   1412

BSNT_04989___   1401 GACAGGCGTCGCACCTTTCCGTTCCTTTATGCAGGAGCGTGAGGAGACGG   1450
                     .||||||||.||.||.||..|.||.||||||||||||||.||.||.||.|
BL01949___cys   1413 CACAGGCGTTGCGCCGTTTAGGTCATTTATGCAGGAGCGCGAAGAAACCG   1462

BSNT_04989___   1451 GAG---CGGAAGGAAAGGCATGGATGTTCTTTGGCGATCAGCGCTTTGTC   1497
                     |||   |||  ||||| .|.|||||||||||.||||||||||..||||||
BL01949___cys   1463 GAGCATCGG--GGAAA-TCGTGGATGTTCTTCGGCGATCAGCATTTTGTC   1509

BSNT_04989___   1498 ACGGATTTCCTTTACCAGACAGAGTGGCAGAATTGGCTCAAAGACGGTGT   1547
                     ||.||||||.|.||.||||||||.|||||.||.|||||.|..||.||.||
BL01949___cys   1510 ACTGATTTCTTATATCAGACAGAATGGCAAAAGTGGCTGAGTGAAGGCGT   1559

BSNT_04989___   1548 GCTGACAAAAATGGATGTGGCGTTCTCACGTGATACAGAAGAAAAAGTAT   1597
                     ||||||||||||||||||.||||||||.||.|||||.|||||||||||||
BL01949___cys   1560 GCTGACAAAAATGGATGTCGCGTTCTCGCGGGATACGGAAGAAAAAGTAT   1609

BSNT_04989___   1598 ATGTGCAGCACCGCATGCTTGAACATAGCGCAGAATTGTTTGAATGGCTT   1647
                     ||||.|||||.||||||||.||.||.|||..||||||||||||.||||||
BL01949___cys   1610 ATGTACAGCATCGCATGCTGGAGCACAGCAAAGAATTGTTTGAGTGGCTT   1659

BSNT_04989___   1648 CAAGAAGGAGCGGCTGTTTACATTTGCGGAGATGAAAAGCACATGGCGCA   1697
                     .||||.|||||||||.|.|||.|||||||.||..|.||..|||||||..|
BL01949___cys   1660 GAAGAGGGAGCGGCTTTCTACGTTTGCGGCGACAAGAACAACATGGCCAA   1709

BSNT_04989___   1698 TGACGTCCATAACACATTGCTTGAAATTATCGAAAAAGAAGGC----AAT   1743
                     .||.||.||.|||.|||||||||||||||||||||||||||||    || 
BL01949___cys   1710 AGATGTTCAAAACGCATTGCTTGAAATTATCGAAAAAGAAGGCGGCAAA-   1758

BSNT_04989___   1744 ATGAGCCGCGAAGAGGCGGAGGCTTATCTTGCCGATATGCAGCAGCAAAA   1793
                        |||||.||.||.||.||.||.||.||.||.||.|||.|..|||||||
BL01949___cys   1759 ---AGCCGTGAGGAAGCTGAAGCCTACCTCGCAGAAATGAAAAAGCAAAA   1805

BSNT_04989___   1794 ACGCTATCAGCGTGATGTATATTGA   1818
                     |||.||||||||.||||||||.|||
BL01949___cys   1806 ACGTTATCAGCGCGATGTATACTGA   1830


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