Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04989 and BL01949
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:10
# Commandline: needle
# -asequence dna-align/BSNT_04989___yvgR.1.5803.seq
# -bsequence dna-align/BL01949___cysI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04989___yvgR-BL01949___cysI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04989___yvgR-BL01949___cysI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04989___yvgR
# 2: BL01949___cysI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1875
# Identity: 1410/1875 (75.2%)
# Similarity: 1410/1875 (75.2%)
# Gaps: 102/1875 ( 5.4%)
# Score: 5176.5
#
#
#=======================================
BSNT_04989___ 1 TTGCAACTTCAGGTAATGAACAGTCCGTTTAATCAGGAGCAGGCAGAGCT 50
||||||||||||||||||||||||||.|||||||||||||||||||||||
BL01949___cys 1 TTGCAACTTCAGGTAATGAACAGTCCTTTTAATCAGGAGCAGGCAGAGCT 50
BSNT_04989___ 51 CCTTAACCGCCTTCTGCCGACCTTGACCGAATCCCAGAAAATCTGGCTGA 100
|||.|||||.||||||||.||.|||||.|.|||.||.|||..||||||||
BL01949___cys 51 CCTCAACCGTCTTCTGCCAACTTTGACGGCATCACAAAAAGCCTGGCTGA 100
BSNT_04989___ 101 GCGGATATTTATCCGCT---CAATCTGTTTCCGCCCAAGAAGCTGCGGGT 147
||||.|||.|..|.||| ||| .||||| ||.||.||||..
BL01949___cys 101 GCGGTTATCTGGCAGCTGTGCAA------ACCGCC---GATGCCGCGGCG 141
BSNT_04989___ 148 GC------------GCCGGCGGCAGCTGTGTCTGC-GGAAGCACCGGCAC 184
|| ||||||||.|||| .|||| |.|||| |||||.|
BL01949___cys 142 GCTCTTGAAACATTGCCGGCGGAAGCT---CCTGCTGCAAGC-CCGGCTC 187
BSNT_04989___ 185 CGGCCGTTTCAAAAGAAGTGACCGTTCTTTAT--GGTTCACAGACGGGAA 232
.|.|.|||||.||||||||||||.| ||||| ||.||.|||||.||||
BL01949___cys 188 AGCCTGTTTCCAAAGAAGTGACCAT--TTTATTCGGATCGCAGACAGGAA 235
BSNT_04989___ 233 ACGCACAGGGGCTTGCAGAAAATGCCGGC-AAGCAGCTTGAACAGA--GC 279
|.||||||||.|||||.|||||.| |||| |||..|||| ||||| |.
BL01949___cys 236 ATGCACAGGGACTTGCCGAAAACG-CGGCTAAGACGCTT--ACAGAACGG 282
BSNT_04989___ 280 GGTTTTCAAGTGACCGTCTCATCCATGAGCGATTTTAAGCCGAATCAGCT 329
||.||||||||.||||||||.||.||||||||||||||||||||.||..|
BL01949___cys 283 GGATTTCAAGTCACCGTCTCTTCAATGAGCGATTTTAAGCCGAACCAATT 332
BSNT_04989___ 330 GAAGAAGGTAACCAATCTTTTAATCGTCGTCAGTACTCATGGAGAAGGCG 379
||||||..|||..||.|||.|.|||||||||||.||.||.||.|||||.|
BL01949___cys 333 GAAGAAACTAAAAAACCTTCTCATCGTCGTCAGCACGCACGGTGAAGGGG 382
BSNT_04989___ 380 AGCCGCCTGATAACGCGCTGTCGTTTCACGAATTTCTGCACGGAAGACGG 429
|.|||||.||.|||||||||||.||.||.||.|||||.||.|||||||||
BL01949___cys 383 ATCCGCCGGACAACGCGCTGTCATTCCATGAGTTTCTCCATGGAAGACGG 432
BSNT_04989___ 430 GCGCCTAAGCTTGAAGATCTGCGTTTTTCCGTTTTGGCGCTTGGTGACAG 479
||.||.|||||.||.|||||.||||.|||.||..||||.|||||.||||.
BL01949___cys 433 GCTCCGAAGCTCGATGATCTCCGTTATTCTGTGCTGGCTCTTGGCGACAC 482
BSNT_04989___ 480 TTCGTACGAATTTTTCTGCCAGACAGGGAAAGAATTTGATCAGC-GCTTA 528
.|||||.|||||||||||||||||.||.|||||.||.||.|||| ||||
BL01949___cys 483 GTCGTATGAATTTTTCTGCCAGACCGGAAAAGAGTTCGACCAGCGGCTT- 531
BSNT_04989___ 529 GAAGAACTCGGCGGAAAACGGATTTCTCCGCGCGTTGATTGCGATCTTGA 578
|..||.||.||.||.|.|.||.|...|||||||||.||.||||||||.||
BL01949___cys 532 GGTGAGCTTGGAGGCACAAGGCTCCATCCGCGCGTCGACTGCGATCTCGA 581
BSNT_04989___ 579 CTATGATGAACCGGCAGCCGAATGGCTTGAGGGTGT-AT-TGAAGGGATT 626
.||||||||.|||||.||.|.|||||||||.||||| || |.|| |.||
BL01949___cys 582 TTATGATGAGCCGGCTGCAGCATGGCTTGACGGTGTCATCTCAA--GCTT 629
BSNT_04989___ 627 AAATGAAG--CTGG----GGGCGGAAGCGCCGCGCCTGCGCCGCCGGCTG 670
|||.|||| |.|| |||||.|||||||||.|||||.|...||||.|
BL01949___cys 630 AAACGAAGGACAGGAACAGGGCGCAAGCGCCGCACCTGCTCAAACGGCAG 679
BSNT_04989___ 671 CGTCTCAAACCG-GTGAGTCTTCG----------TATTCCAGAACAAACC 709
|..|.|||.||| |.||| | |||||.||||.|||.|
BL01949___cys 680 CTCCGCAAGCCGCGGGAG-----GAGTAACAGTATATTCGAGAAAAAATC 724
BSNT_04989___ 710 CGTTTCGGGCTGAAGTGTTAGAAAATTTAAATTTAAACGGCAGAGGATCA 759
||||..|.||.||||||.|.||||||||.||||||||||||.|.||||||
BL01949___cys 725 CGTTCAGAGCGGAAGTGCTGGAAAATTTGAATTTAAACGGCCGCGGATCA 774
BSNT_04989___ 760 AATAAAGAAACACGCCATGTGGAGCTGTCTCTTGAAGGATCAGGCCTGAC 809
|||||||||||.||||||.|.||..|.||.||||||||.|||||..||||
BL01949___cys 775 AATAAAGAAACGCGCCATCTTGAATTATCGCTTGAAGGCTCAGGTTTGAC 824
BSNT_04989___ 810 TTACGAGCCTGGTGACAGC-CTCGGCGTCTATCCAGAAAACGATCCGGAA 858
|||.||.|||||.||| || ||||||.|||.|||.|||||.||.||.|||
BL01949___cys 825 TTATGAACCTGGCGAC-GCGCTCGGCATCTTTCCGGAAAATGACCCTGAA 873
BSNT_04989___ 859 CTTGTCGAGCTGCTCCTTAAGGAAATGAATTGGGACCCGGAAGAAATTGT 908
||.|||||..||||.||.||.||..||||.|||||.||| |||..|
BL01949___cys 874 CTCGTCGATATGCTGCTGAAAGAGCTGAAATGGGATCCG-----AATGCT 918
BSNT_04989___ 909 GACGCT--TAATAAGCAAGGTGATGTCCGTCCGCTGAAAGAAGCGCTGAT 956
|.||.| |..|.|.|||||.||...||.|.|..|||||||||||.|||.
BL01949___cys 919 GCCGTTGCTGTTGATCAAGGGGAAAACCTTTCTTTGAAAGAAGCGTTGAC 968
BSNT_04989___ 957 TTCTCACTATGAGATTACCGTTCTCACA---AAACCGCTTC-TTGAACAG 1002
||||.|||||||.|||||.||.||.||| ||| ||| ||.|.|||
BL01949___cys 969 TTCTTACTATGAAATTACGGTGCTGACAAAGAAA----TTCATTCAGCAG 1014
BSNT_04989___ 1003 GCAGCCCAGCTGACAGGGAACGATGAGCTTAGAGAGCTTTTAGCCCCGGG 1052
||.||..|..|.|..|..||.||..||||..|.||||||...||.||||.
BL01949___cys 1015 GCGGCAGAAATCATTGAAAATGAAAAGCTGCGCGAGCTTGCCGCTCCGGA 1064
BSNT_04989___ 1053 AAATGAGGA-GAATGTAAAAGCCTATATTGAAGGGCGCGATTTGCTTGAT 1101
|||||.||| .||| |||||||.|||||.|..||.|||||..||.|||||
BL01949___cys 1065 AAATGCGGATCAAT-TAAAAGCGTATATCGCTGGCCGCGACCTGATTGAT 1113
BSNT_04989___ 1102 CTCGTCCGTGACTATGGCCCATTTAGTGTATCTGCGCAGGAGTTTGTCTC 1151
.|.||.||.||.|..||.||..|....|.|.||.|||||||.|||||.||
BL01949___cys 1114 TTTGTGCGGGATTTCGGTCCGATCGCAGCAGCTCCGCAGGAATTTGTATC 1163
BSNT_04989___ 1152 GATTTTGCGAAAAATGCCTGCC-CGCCTTTATTCGATTGCAAGCAGTTTA 1200
||||.|.|||||||| ||.||| ||.|||||||||||.|||...||.||.
BL01949___cys 1164 GATTCTTCGAAAAAT-CCCGCCTCGGCTTTATTCGATCGCATCGAGCTTC 1212
BSNT_04989___ 1201 TCCGCAAATCCGGATGAAGTGCATTTAACAATCGGCGCAGTCCGCTACGA 1250
.|.|||||||||||||||||||||||.||.|||||.||.|||||||||.|
BL01949___cys 1213 GCTGCAAATCCGGATGAAGTGCATTTGACGATCGGTGCTGTCCGCTACAA 1262
BSNT_04989___ 1251 TGCGCATGGCCGTGAACGAAAAGGCGTCTGCTCGATTTTGTGCGCGGAAC 1300
||||||.|||.|.||.||||||||.|||||||||.|.||.||.||.||||
BL01949___cys 1263 TGCGCACGGCAGAGACCGAAAAGGGGTCTGCTCGGTATTATGTGCCGAAC 1312
BSNT_04989___ 1301 GTCTGCAGCCGGGAGACACACTGCCGGTTTATGTACAGCACAATCAAAAC 1350
||||||||||.||.|||||.|||||.||||...|.||||..|||.|||||
BL01949___cys 1313 GTCTGCAGCCTGGCGACACCCTGCCTGTTTTCATTCAGCCGAATAAAAAC 1362
BSNT_04989___ 1351 TTTAAGCTTCCGAAAGACCCTGAAACACCGATTATCATGGTGGGCCCTGG 1400
||||||||.|||.|..|.||.||.||.||||||||||||||.|||||.||
BL01949___cys 1363 TTTAAGCTGCCGGAGAATCCGGAGACTCCGATTATCATGGTCGGCCCCGG 1412
BSNT_04989___ 1401 GACAGGCGTCGCACCTTTCCGTTCCTTTATGCAGGAGCGTGAGGAGACGG 1450
.||||||||.||.||.||..|.||.||||||||||||||.||.||.||.|
BL01949___cys 1413 CACAGGCGTTGCGCCGTTTAGGTCATTTATGCAGGAGCGCGAAGAAACCG 1462
BSNT_04989___ 1451 GAG---CGGAAGGAAAGGCATGGATGTTCTTTGGCGATCAGCGCTTTGTC 1497
||| ||| ||||| .|.|||||||||||.||||||||||..||||||
BL01949___cys 1463 GAGCATCGG--GGAAA-TCGTGGATGTTCTTCGGCGATCAGCATTTTGTC 1509
BSNT_04989___ 1498 ACGGATTTCCTTTACCAGACAGAGTGGCAGAATTGGCTCAAAGACGGTGT 1547
||.||||||.|.||.||||||||.|||||.||.|||||.|..||.||.||
BL01949___cys 1510 ACTGATTTCTTATATCAGACAGAATGGCAAAAGTGGCTGAGTGAAGGCGT 1559
BSNT_04989___ 1548 GCTGACAAAAATGGATGTGGCGTTCTCACGTGATACAGAAGAAAAAGTAT 1597
||||||||||||||||||.||||||||.||.|||||.|||||||||||||
BL01949___cys 1560 GCTGACAAAAATGGATGTCGCGTTCTCGCGGGATACGGAAGAAAAAGTAT 1609
BSNT_04989___ 1598 ATGTGCAGCACCGCATGCTTGAACATAGCGCAGAATTGTTTGAATGGCTT 1647
||||.|||||.||||||||.||.||.|||..||||||||||||.||||||
BL01949___cys 1610 ATGTACAGCATCGCATGCTGGAGCACAGCAAAGAATTGTTTGAGTGGCTT 1659
BSNT_04989___ 1648 CAAGAAGGAGCGGCTGTTTACATTTGCGGAGATGAAAAGCACATGGCGCA 1697
.||||.|||||||||.|.|||.|||||||.||..|.||..|||||||..|
BL01949___cys 1660 GAAGAGGGAGCGGCTTTCTACGTTTGCGGCGACAAGAACAACATGGCCAA 1709
BSNT_04989___ 1698 TGACGTCCATAACACATTGCTTGAAATTATCGAAAAAGAAGGC----AAT 1743
.||.||.||.|||.||||||||||||||||||||||||||||| ||
BL01949___cys 1710 AGATGTTCAAAACGCATTGCTTGAAATTATCGAAAAAGAAGGCGGCAAA- 1758
BSNT_04989___ 1744 ATGAGCCGCGAAGAGGCGGAGGCTTATCTTGCCGATATGCAGCAGCAAAA 1793
|||||.||.||.||.||.||.||.||.||.||.|||.|..|||||||
BL01949___cys 1759 ---AGCCGTGAGGAAGCTGAAGCCTACCTCGCAGAAATGAAAAAGCAAAA 1805
BSNT_04989___ 1794 ACGCTATCAGCGTGATGTATATTGA 1818
|||.||||||||.||||||||.|||
BL01949___cys 1806 ACGTTATCAGCGCGATGTATACTGA 1830
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