Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06255 and BL01945
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:13
# Commandline: needle
# -asequence dna-align/BSNT_06255___yosT.1.5803.seq
# -bsequence dna-align/BL01945___yosT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06255___yosT-BL01945___yosT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06255___yosT-BL01945___yosT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06255___yosT
# 2: BL01945___yosT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 520
# Identity: 282/520 (54.2%)
# Similarity: 282/520 (54.2%)
# Gaps: 140/520 (26.9%)
# Score: 625.5
#
#
#=======================================
BSNT_06255___ 1 ------TTGAAAAT---AACTATTGAAGAATTACCTGAATCAAGGATTGC 41
||.||||| |||..||..| ||.|||| |.|||||
BL01945___yos 1 ATGAAATTCAAAATCGAAACACTTCCA-AACTACC--------GCATTGC 41
BSNT_06255___ 42 TTATTT---CAGAAATGTTGGGGAGTACGGTGAAAAGC----AAAACAAA 84
.|||.| |.|| |||||....|||| || ..||||..
BL01945___yos 42 ATATATGCGCCGA---GTTGGTCCATACG-------GCCCCGCCAACATT 81
BSNT_06255___ 85 GAATTAATGGAGACTTTTAAAAAGTGGGC----AAAATTGAATGATGTAT 130
||..|||||||.|..||.|||||.||||| ||| ||.|||.|..
BL01945___yos 82 GAGGTAATGGAAAGATTAAAAAAATGGGCTAAGAAA----AAAGATCTTC 127
BSNT_06255___ 131 TTGATAATTCTACAAT---TTTAGGC-ATACCGCAAGATAACCCAGAGAT 176
||| |||.|..||.| ||| || ||.||.||||||||||| ||.|.
BL01945___yos 128 TTG--AATCCGCCATTCTGTTT--GCGATTCCACAAGATAACCC-GAAAA 172
BSNT_06255___ 177 TA----CTCCTAAAGAGGAATGTCGTTATGATGTTTGTGTTGTTATAAAT 222
.| ||||| ||..|.|||||.|.|||||.||||.||||.|||...
BL01945___yos 173 CAACGCCTCCT---GATCATTGTCGATTTGATGCTTGTATTGTGATACCG 219
BSNT_06255___ 223 AAAGATT-TGAATGT-GAAAAAACCAGCTCATGTTGGAGAATTTTCTGGT 270
.|.|||| |.|| || ||..|.||| |.|..||..||.|||.||||.||.
BL01945___yos 220 CATGATTATCAA-GTCGATGATACC-GTTTTTGAAGGCGAAATTTCCGGC 267
BSNT_06255___ 271 GGGAAATATGCTGTTTTCTTGCTTGACCATACAAAAGAGGC-AGTCAGAG 319
||..||||...|.|||.|..|.||||.||||||..|||.|| |.|||.|.
BL01945___yos 268 GGACAATACCTTATTTACGAGGTTGAACATACAGCAGAAGCTATTCAAAA 317
BSNT_06255___ 320 ACTTTTGGGGCA-------ATA-TTTCT----TCTG-AGATAGAAAGAAA 356
| ||| ||| ||||| |||| | |||.|||
BL01945___yos 318 A--------GCATATTCAGATATTTTCTCATCTCTGCA-----AAACAAA 354
BSNT_06255___ 357 TAATCTATCAATAAGAGAACA-ACCAATTATAGAAA-----------GAT 394
||.||||..||.||.| .|||||.||.|||| |||
BL01945___yos 355 -----TACCAATTGGACAATAGGCCAATCATGGAAAAATACGTTGGTGAT 399
BSNT_06255___ 395 ATACTCCACAAATG-----ATTGATAATCATTTGTGTG------AAAT-- 431
||..|..||| | ||||..|| ||.|||||| ||||
BL01945___yos 400 ATGGTGAACA---GTCCGTATTGCGAA--ATATGTGTGCCCTTAAAATCG 444
BSNT_06255___ 432 -ATTAATTCCTATACAGTAA 450
.||||
BL01945___yos 445 GTTTAA-------------- 450
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