Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05973 and BL01938
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:02
# Commandline: needle
# -asequence dna-align/BSNT_05973___yxjA.1.5803.seq
# -bsequence dna-align/BL01938___nupG.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05973___yxjA-BL01938___nupG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05973___yxjA-BL01938___nupG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05973___yxjA
# 2: BL01938___nupG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1233
# Identity: 911/1233 (73.9%)
# Similarity: 911/1233 (73.9%)
# Gaps: 78/1233 ( 6.3%)
# Score: 3302.5
#
#
#=======================================
BSNT_05973___ 1 ATGTACTTT----TTACTAAACCTTGTCGG---TCTCATTGTGATTATGG 43
|||||.||| |||.|| ||.|.|| |.|||||| |.|||.
BL01938___nup 1 ATGTATTTTCTCATTAATA----TTTTAGGCATTTTCATTG---TCATGT 43
BSNT_05973___ 44 CAGT--TGTATTCCTATGTTCTCCGCAGAAAAAGAAAA---TCAAGTGGC 88
|.|| |.|||| |.|||||.|||| .|||||||| |.||.|||.
BL01938___nup 44 CTGTAATTTATT--TTTGTTCCCCGC---GAAAGAAAAGCGTAAAATGGA 88
BSNT_05973___ 89 GCCCGA------------TCATGACGTTAA--TTGTTCTGGAATTGCTGA 124
|.|||| |||| ||||.| || |||.||
BL01938___nup 89 GGCCGATTCTCTCCCTTTTCAT--CGTTGAGCTT---------TTGGTG- 126
BSNT_05973___ 125 TTACTTGGTTTATGCTGGGAACAAAAGTCGGAAGCTGGGCTATCGGTAAA 174
||.|||||||||||.||.||||||.||||..|.|||||.||| ||
BL01938___nup 127 --ACGTGGTTTATGCTTGGGACAAAAATCGGCGGATGGGCCATC----AA 170
BSNT_05973___ 175 ----ATCGGTGATTTCTTCACTTGGCTGATTGCTTGCGCCAGTGACGGTA 220
||||....||||||..|.||||||||.|||||.||.||.|||||.|
BL01938___nup 171 CCTGATCGCCTCTTTCTTTTCGTGGCTGATCGCTTGTGCAAGCGACGGCA 220
BSNT_05973___ 221 TCGCGTTTGCCTTTCCGTCAGTGATGGCGAATGAAACAGTAGACTTTTTC 270
||||.||||||||||||||.|||||||..||||||||.||.|||||||||
BL01938___nup 221 TCGCTTTTGCCTTTCCGTCCGTGATGGGCAATGAAACCGTTGACTTTTTC 270
BSNT_05973___ 271 TTTAGTGCGCTT-CTTCCAATTATCTTTATCGTCACATTCTTTGATATTT 319
||.||.|| ||| ||.||.|||||.|||.|.||.|||||.||||||||..
BL01938___nup 271 TTCAGCGC-CTTGCTGCCGATTATTTTTGTTGTGACATTTTTTGATATAC 319
BSNT_05973___ 320 TAACGTATTTCGGTATTTTGCCTTGGCTGATTGATAAAATCGGATGGGTG 369
|..|.||||||||.|||||..|.|||.||||||||||.|||||.|||||.
BL01938___nup 320 TGGCTTATTTCGGAATTTTAACATGGATGATTGATAAGATCGGCTGGGTA 369
BSNT_05973___ 370 ATTTC-AAAGGCTTCCCGCTTGCCGAAATTAGAAAGCTTTTTCTCTATTC 418
||||| ||||.| ||.|||.|.||.|||||||||||.||.||.||.||||
BL01938___nup 370 ATTTCGAAAGTC-TCACGCCTTCCTAAATTAGAAAGTTTCTTTTCGATTC 418
BSNT_05973___ 419 AAATGATGTTTCTGGGAAATACCGAAGCACTTGCGGTTATCCGCCAGCA- 467
||||||||||||||||.|||||.|||||.||.||.||.||.|||..|||
BL01938___nup 419 AAATGATGTTTCTGGGCAATACTGAAGCGCTCGCCGTCATTCGCGGGCAA 468
BSNT_05973___ 468 ---GCTAACGGTTTTAAGCAACAACCGCCTGCTCACATTCGGCTTAATGA 514
||| ||.||||...|.|||||||||||.||.||||||.|.||||
BL01938___nup 469 TTGGCT----GTATTAAAGGATAACCGCCTGCTGACGTTCGGCATTATGA 514
BSNT_05973___ 515 GCATGAGCAGCATCAGCGGCTCCATTATCGGATCTTATCTGTCAATGGTG 564
|||||||||||||||||||.||.|||.||||.||||||.|..|.|||||.
BL01938___nup 515 GCATGAGCAGCATCAGCGGATCGATTCTCGGTTCTTATTTAACGATGGTT 564
BSNT_05973___ 565 CCTGCGACATACTTGTTTACAGCCATTCCTTTGAACTGCTTAAACGCGCT 614
||||||||||||.|.|||||.|||||.||..|.|||||||||||.|||.|
BL01938___nup 565 CCTGCGACATACGTATTTACCGCCATCCCGCTAAACTGCTTAAATGCGTT 614
BSNT_05973___ 615 GATTATCGCAAACCTGCTGAATCCTGTTCACGTGCCTGAGGATGAAGATA 664
|||..|.||.|.|.|..|.||.||.||..|.||..||.||||||||||.|
BL01938___nup 615 GATCTTGGCCAGCATTTTAAACCCGGTGGAAGTCACTAAGGATGAAGACA 664
BSNT_05973___ 665 TCATCTATACACCGCCTAAAGAAGAGAAGAAAGACTTTTTCTCTACGATT 714
|.||.||...||||||.|||||||||||.||.|||||||||||.||||||
BL01938___nup 665 TTATTTACGTACCGCCAAAAGAAGAGAAAAAGGACTTTTTCTCAACGATT 714
BSNT_05973___ 715 TCTAACAGTATGCTTGTCGGCATGAACATGGTTATCGTTATTTTAGCAAT 764
||.|||||.|||.|.|||||.|||||.|||||.|||||.|||.|.||.||
BL01938___nup 715 TCAAACAGCATGATGGTCGGAATGAATATGGTCATCGTCATTCTCGCCAT 764
BSNT_05973___ 765 GGTGATCGGATATGTCGCATTAACGTCAGCAGTT--AATGGCATTCTTGG 812
|||.||||||||||||||.|||||.||| .||| ||.||.|||.|.||
BL01938___nup 765 GGTCATCGGATATGTCGCTTTAACCTCA--TGTTTGAACGGTATTTTGGG 812
BSNT_05973___ 813 CGTTTTCGTACACGGCCTGACCATCCAGACGATTTTTGCTTATCTGTTCA 862
|.|..|||||.||||..||||.||.||.|.|||.|||.|||||.|.||||
BL01938___nup 813 CTTGATCGTAGACGGTTTGACGATTCAAAAGATCTTTTCTTATATCTTCA 862
BSNT_05973___ 863 GTCCATTCGCATTCCTGCTTGGATTGCCAGTGCACGATGCGATGTATGTT 912
||||.||||||||||||||||||.||.|...|..|||.||||||||||||
BL01938___nup 863 GTCCGTTCGCATTCCTGCTTGGACTGGCGCCGGGCGACGCGATGTATGTT 912
BSNT_05973___ 913 GCTCAGCTGATGGGCATGAAATTAGCAACGAACGAGTTTGTTGCGATGCT 962
||.||||||||||||||||||.|.||.||.|||||.||.||.||||||.|
BL01938___nup 913 GCACAGCTGATGGGCATGAAACTCGCCACAAACGAATTCGTCGCGATGAT 962
BSNT_05973___ 963 TGACTTGAAAAAC-AATCTCAAATCCCTTCCGCCTCACACCGTTGCGGTG 1011
.|| ||.|||||| .|.||..|..|..||.|.||.||.||.|..||.|||
BL01938___nup 963 GGA-TTTAAAAACGCAGCTAGACGCGATTTCACCCCATACAGCCGCCGTG 1011
BSNT_05973___ 1012 GCGACGACATTCCTGACGTCCTTTGCAAACTTCAGTACGGTCGGCATGAT 1061
||.||.|||||..|||||||.|||||.||||||||||||.||||.|||||
BL01938___nup 1012 GCCACAACATTTTTGACGTCGTTTGCCAACTTCAGTACGATCGGGATGAT 1061
BSNT_05973___ 1062 TTACGGCACGTACAATTCGATCCTTGACGGAGAAAAATCAACGGTCATCG 1111
.||.||.|||||||||||..|..||.|||||||||||||..||.|.||||
BL01938___nup 1062 CTATGGAACGTACAATTCCTTATTTAACGGAGAAAAATCGGCGATTATCG 1111
BSNT_05973___ 1112 GGAGAAACGTGTGGAAACTGATCGTAAGCGGAATTGCAGTATCTTTATTA 1161
|.|||||.||||||||.||..||||.||||||||.|||||.||..|.||.
BL01938___nup 1112 GAAGAAATGTGTGGAAGCTCCTCGTCAGCGGAATAGCAGTGTCGCTGTTG 1161
BSNT_05973___ 1162 AGTGCTGCGATTGTCGGCCTGTTTGTGTGGTAG 1194
||.||.|.|||||||||.||||||||.||||||
BL01938___nup 1162 AGCGCGGGGATTGTCGGGCTGTTTGTTTGGTAG 1194
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