Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04827 and BL01931

See Amino acid alignment / Visit BSNT_04827 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:02
# Commandline: needle
#    -asequence dna-align/BSNT_04827.1.5803.seq
#    -bsequence dna-align/BL01931.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04827-BL01931.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04827-BL01931.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04827
# 2: BL01931
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 918
# Identity:     326/918 (35.5%)
# Similarity:   326/918 (35.5%)
# Gaps:         498/918 (54.2%)
# Score: 593.5
# 
#
#=======================================

BSNT_04827         0 --------------------------------------------------      0
                                                                       
BL01931            1 ATGAGAAGGAAATTCGGACCTTTAACGATACTGGAATATATATGCCTTGT     50

BSNT_04827         0 --------------------------------------------------      0
                                                                       
BL01931           51 TTTGCTGGCGGCTCTGTTTATATTTCCGCTGATTTGGATGGTCGCTTCAT    100

BSNT_04827         0 --------------------------------------------------      0
                                                                       
BL01931          101 CGATGAAACCGGAAGCCGATATTTACAACAATATCAGCAGCATTAAAGCG    150

BSNT_04827         1 ------------------------------------------------AT      2
                                                                     .|
BL01931          151 TTTCTTCCGTCTTTTCATCCGTCGGAATGGTTTCAATCCTACAGGGAAGT    200

BSNT_04827         3 GCTGACGCCGCAGGT-------------------------CAGTCT-TAT     26
                     ||||.|.|    |||                         |||||| |.|
BL01931          201 GCTGTCAC----GGTTTGATTTACTAATGTATATTGGTAACAGTCTGTTT    246

BSNT_04827        27 GCCGCTTTAT------------------TCTATTATTCA-------GTC-     50
                     ..||.|||.|                  || |||| |||       |.| 
BL01931          247 TACGGTTTGTGTGTGGCAGCGGGAGCGGTC-ATTA-TCAACGGAATGGCG    294

BSNT_04827        51 -GCTTGGCCT---------------------GTACAATA-----------     67
                      ||||.||.|                     |||.||.|           
BL01931          295 GGCTTTGCATTCGCCAAGCTGCAATTCACAGGTAAAAAAGTGCTGTTTAC    344

BSNT_04827        68 CGTATTG--GGCG---TTAATCCTGCCGTATG----CGGCTT--ATCGGA    106
                     |.|||||  ||||   ||||||.||||| |||    ||..||  |||   
BL01931          345 CATATTGCTGGCGCTTTTAATCGTGCCG-ATGGAAACGATTTTAATC---    390

BSNT_04827       107 TCCCA-TTCACCAT----------------CATTTTGATCCGCTC-----    134
                     ||.|| ||.||.||                |.|.|||||.|||.|     
BL01931          391 TCGCAGTTTACAATTGTTCATAAGCTCGGACTTGTTGATACGCGCCTTGC    440

BSNT_04827       135 --TTATTTT-----------------CTTTCTAT---------TTCCAAA    156
                       |.|||||                 |||||.||         ||||.||
BL01931          441 CGTGATTTTGCCGGCGCTTGCGGGGGCTTTCAATATTTATTTGTTCCGAA    490

BSNT_04827       157 GAATT------------------GGAG------GAGGCGGCCTATTTGGA    182
                      |.||                  ||||      |||.|||||.|..||||
BL01931          491 -ACTTTTTCATGGCGATCCCGGGGGAGATGATTGAGTCGGCCAAGCTGGA    539

BSNT_04827       183 TGGGTG----TACAAGTTTTGGAGTATTTTTCAGAATTTTCTTACCGATG    228
                      .||.|    ||||     |||         ||| |||||||..|.|.||
BL01931          540 -CGGAGCAAATACA-----TGG---------CAG-ATTTTCTGGCGGGTG    573

BSNT_04827       229 A-GCGTGCCGATTT---------------------TGGTGACATCCGGCA    256
                     | || |||||||.|                     |||.||||| .||| 
BL01931          574 ATGC-TGCCGATGTCCAAACCGGCTGTCGCTACGGTGGGGACAT-TGGC-    620

BSNT_04827       257 TTTTGACGGCTTACCATACATGGAATGAGTTTATGTTTGC----GATTAT    302
                     ||||..||||       |..||||||||.|.||| ||.||    |||..|
BL01931          621 TTTTATCGGC-------AGCTGGAATGACTATAT-TTGGCCGCTGATGGT    662

BSNT_04827       303 TTTCATAGAT--GATGAGAATTTGCG--------GACCATTCCAGCCGGG    342
                     |||.|..|||  |..|| |||||.||        |.|.|||.|||||   
BL01931          663 TTTGACGGATAAGTCGA-AATTTCCGATCCAGGTGGCGATTACAGCC---    708

BSNT_04827       343 CTGAT--GCAGTTCAGAGACGCGCTGCAGACAGACTGGGGCGTCCTGCTG    390
                        ||  .|||  ||..||..||.|..|.||..||..||      ||.||
BL01931          709 ---ATCAACAG--CACCGAGCCGGTTTATACGAACCAGG------TGATG    747

BSNT_04827       391 GCGGGGTTAACGATTTCAGCCGCGC-CGATT---ATTATTCT-ATTTTTA    435
                     ||.|..||.||||||||       | |||||   .|.||||| ||.|..|
BL01931          748 GCTGTCTTGACGATTTC-------CACGATTCCGCTGATTCTGATCTACA    790

BSNT_04827       436 TTGATGCAGAA----ATATTTTGTCCGCGGGATTGC--AAGCGG--CAGT    477
                     |||..||..||    |.|||||       .|||.||  ..||||  |||.
BL01931          791 TTGTAGCCCAACGCTACATTTT-------AGATGGCCTGGGCGGTTCAGG    833

BSNT_04827       478 GTAAAAGG-ATAA-----    489
                     |  |.||| ||.|     
BL01931          834 G--ACAGGCATCAAATAG    849


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