Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04475 and BL01906
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:40
# Commandline: needle
# -asequence dna-align/BSNT_04475___mntC.1.5803.seq
# -bsequence dna-align/BL01906___mntD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04475___mntC-BL01906___mntD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04475___mntC-BL01906___mntD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04475___mntC
# 2: BL01906___mntD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1477
# Identity: 519/1477 (35.1%)
# Similarity: 519/1477 (35.1%)
# Gaps: 785/1477 (53.1%)
# Score: 1004.5
#
#
#=======================================
BSNT_04475___ 1 -------------AT-GTTTGA---AA-----GTTTGTG--------GCT 20
|| |||||| || ||||.|| |||
BL01906___mnt 1 ATGGAGTTTATCCATGGTTTGATGGAATATTCGTTTCTGCAAAAATCGCT 50
BSNT_04475___ 21 GCAGCTTCAGCATCCGAATACACAGTGGGTGCTGGCCGGTACGC----TT 66
| ||||.| .|||.|| ||.||| || ||
BL01906___mnt 51 G----TTCACC--TCGATTA---------TGGTGG-------GCATCATT 78
BSNT_04475___ 67 TTGCTCGGGACGGCAAGCGGTGTTTTGGGCAGCTTTGTGCTGCT---GAG 113
| ||||.||..|.|||.|||||.|..|.|| |.|
BL01906___mnt 79 T---------------GCGGCGTCATCGGCTGCTTTATCATTCTCAGGGG 113
BSNT_04475___ 114 AA---AGCAAAGTTTAATCGGCGATGCGATGGCCCATTCAGCTCTGCCGG 160
|| .|| |.||.||.||||||||..|.||..|.|.|||.||.|
BL01906___mnt 114 AATGGCGC------TGATGGGAGATGCGATTTCACACGCGGTTCTTCCCG 157
BSNT_04475___ 161 GAGTGTGCC-TCGCTTTTCTGTTCACCGGGCAAAAATCACTGCCTTTCTT 209
|.|| .||| ||.|||.|.||.||..|| |||.| ||
BL01906___mnt 158 GCGT-CGCCATCTCTTATATGCTCGGCG--------TCAAT-------TT 191
BSNT_04475___ 210 TTTGCTGGGTGCGGCGCTCG-------------CCGGACTG--CTCGGAA 244
||| .|.|||||| || ||.|||.| |||||||
BL01906___mnt 192 TTT-----CTTCGGCGC-CGTCTTTACGGGCATCCTGACGGCTCTCGGAA 235
BSNT_04475___ 245 CATTTTGTATTCAACTGATTCCTCGGCTTT-----CAAAAACA------- 282
||||||.| |.||||||
BL01906___mnt 236 ----------------------TCGGCTATGTCAGCCAAAACAGCCGGAT 263
BSNT_04475___ 283 -AAGGAGGACTCGGCGATCGGGATTGTTCTTTCTGTGTTTTTTGGCGTCG 331
||..|.||.|||||.|||||.||.||..||.|.|..|||||.|.|||||
BL01906___mnt 264 TAAAAACGATTCGGCCATCGGCATCGTATTTACGGCCTTTTTCGCCGTCG 313
BSNT_04475___ 332 GGATCATTCTGCTGACATATATTCAGCAACAGGGGGCGGGAAGCCAAAGC 381
|.|||||..||.|.||...|.| ||| ||||..||||
BL01906___mnt 314 GAATCATATTGATCACGCTTGT----CAA-----------AAGCTCAAGC 348
BSNT_04475___ 382 GGGCTTGATTCTTTTTTATTCGGCCAGGCTGC------TTCATTGGTCAG 425
|..||..|...|.|.||||||||..|.| ||| |||.||..||||
BL01906___mnt 349 GATCTGTACCATATCTTATTCGGAAATG-TGCTGGCCGTTCGTTCATCAG 397
BSNT_04475___ 426 GCA---GGATATCA---TCCTTATTGCAG-GAATAT-----CCGCTGCTC 463
.|| || |||| ||.|.||.|.|| .|.||| |||||| ||
BL01906___mnt 398 ACATGTGG--ATCACGCTCGTCATCGGAGTCATTATTCTTACCGCTG-TC 444
BSNT_04475___ 464 TGCTGCTCCTATGTATTGTTTTCTTTAAGGAATTTACA--------TTGA 505
| |||| |.|||||| .|.|
BL01906___mnt 445 T-----------------TTTT--------ATTTTACAAAGAGCTGCTCA 469
BSNT_04475___ 506 TTA---CTTTTGATC------TCGCGTTTGCAAAGGGATTAG--GAATCC 544
|.| ||||.||.| |.|||..||...|.||.|| | ||| |
BL01906___mnt 470 TCACCTCTTTCGACCCGACGATGGCGGCTGTCTACGGCTT-GCCGAA--C 516
BSNT_04475___ 545 CGG---------TGCGTTTTTTAA--ACGGGCTTTTGGCTTGTCTGATTG 583
||| |.| ||||||| || ||||||..| .||.|
BL01906___mnt 517 CGGCTGATCCACTAC--TTTTTAATGAC--GCTTTTAAC------AATGG 556
BSNT_04475___ 584 TCTGTGCTGTCGTCATTGGGCTTCAGACTGTTGGTGTGATACTAATGGCG 633
|| .|.|||| ||| .|||||||||.||.||..|.||.||..|.|..
BL01906___mnt 557 TC---ACGGTCG-CAT--CGCTTCAGACCGTCGGCATCATCCTCGTCGTC 600
BSNT_04475___ 634 GCTATGCTGATTACACCTGCCATAGCTGC-GAGATATTGGACCGAACGAT 682
||.||||||||.||.||||||..|.|.|| .|..||||| |||
BL01906___mnt 601 GCGATGCTGATCACGCCTGCCGCAACCGCTTATCTATTG------ACG-- 642
BSNT_04475___ 683 TAACCGG--------GATGATCGTCATTGCCGGGATTAC-AGGCG--GGG 721
.||||| ||||||| |..|||.|.|..||.| .|||| ..|
BL01906___mnt 643 -GACCGGCTGTGGGTGATGATC-TATTTGTCCGCTTTCCTCGGCGCTTTG 690
BSNT_04475___ 722 TCAGCGG--AGTGGCC--GG----------------AACC-CTGCTTAGC 750
||||||| |..|||| || |||| ||.||.||.
BL01906___mnt 691 TCAGCGGTCATCGGCCTTGGATTAAGCTATACGTACAACCTCTCCTCAGG 740
BSNT_04475___ 751 ACCACGATGAAGGGAA---------TGGCGACAGGGCCATTAATGATCTT 791
|.| ||.|| ||||.|| |||.||
BL01906___mnt 741 AGC--------GGCAATCGTGCTCGTGGCTAC------------GATTTT 770
BSNT_04475___ 792 ATCTGCAACGCTGCTCTTTCTTTTTTCAATGATTTGCGCGCCTAA----- 836
.|..|.| |||||.||| |.|.||| |.||.||
BL01906___mnt 771 GTTCGGA--------CTTTCCTTT----ACGTTTT---CACCGAAACAAG 805
BSNT_04475___ 837 GCGGGGATTG----GCTGCTAAATCCATAAGGCTGATGAGGCTGCGGCGC 882
|||.|..||| ||||..|||||.|.|||
BL01906___mnt 806 GCGTGCTTTGGAGAGCTGTGAAATCAAGAAG------------------- 836
BSNT_04475___ 883 AGAACAAGCAGGG-AGCAAGTGCTTTTGGAGATTTATGAACAATATGAAA 931
|.||| ||| ||| ||| |.|||||||.
BL01906___mnt 837 AAAAC-----GGGCAGC----GCT------------TCAACAATAA---- 861
BSNT_04475___ 932 AGAATAATCTTTGTGTAACTGTTGAAAGTGTAAGAAAGAAAAGACGCCTA 981
BL01906___mnt 861 -------------------------------------------------- 861
BSNT_04475___ 982 TCCTCTTCATTATGCCTTAAGGCATTAAATGACTTGGAACAAGAGAGGTG 1031
BL01906___mnt 861 -------------------------------------------------- 861
BSNT_04475___ 1032 CATTGAGCGTATCGAAAATGGGATTTGGCAAATCACAAGCAAAGGGATAG 1081
BL01906___mnt 861 -------------------------------------------------- 861
BSNT_04475___ 1082 AAAAAGGCTATCACACAGCTTTGAAGCAGCGGATGTATGAAGTGTATCTC 1131
BL01906___mnt 861 -------------------------------------------------- 861
BSNT_04475___ 1132 ATGCATGAAATGGACCTTGCCAATATAGAATCCGATCAGGACTGCTTTGA 1181
BL01906___mnt 861 -------------------------------------------------- 861
BSNT_04475___ 1182 CCCGGACCGTTTACCGAGAGAAACGAGAGAGCGGCTTTATTCACTCTTAA 1231
BL01906___mnt 861 -------------------------------------------------- 861
BSNT_04475___ 1232 AGCTGTATGGACGGATGCCTGAGCATCGAAAAGCGTCTCATGATGCCAAG 1281
BL01906___mnt 861 -------------------------------------------------- 861
BSNT_04475___ 1282 AAGGGACAGATCGCAAATGAGTTTTGA 1308
BL01906___mnt 861 --------------------------- 861
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