Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03464 and BL01891
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:27
# Commandline: needle
# -asequence dna-align/BSNT_03464___ribD.1.5803.seq
# -bsequence dna-align/BL01891___ribD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03464___ribD-BL01891___ribD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03464___ribD-BL01891___ribD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03464___ribD
# 2: BL01891___ribD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1149
# Identity: 801/1149 (69.7%)
# Similarity: 801/1149 (69.7%)
# Gaps: 123/1149 (10.7%)
# Score: 2760.0
#
#
#=======================================
BSNT_03464___ 1 ---ATGGAAGAGTATTATATGAAGCTGGCCTTAGATCTTGCGAAGCAGGG 47
|.|||.|.|.||||||||||.||.||.||.||.||.||||.||||||
BL01891___rib 1 ATGACGGATGCGCATTATATGAATCTTGCATTGGAGCTGGCGAGGCAGGG 50
BSNT_03464___ 48 CGAAGGACAGACCGAATCCAATCCGCTCGTCGGCGCTGTTGTCGTAAAGG 97
||||||.|||||||...||||||||||.|||||.||.||||||||.||.|
BL01891___rib 51 CGAAGGCCAGACCGGGGCCAATCCGCTTGTCGGAGCGGTTGTCGTCAAAG 100
BSNT_03464___ 98 ACGGACAAATTGTCGGAATGGGCGCCCATTTAAAATATGGTGAAGCTCAT 147
||||..||.|.|||||||||||.||||||||||||||.||.|||||.|||
BL01891___rib 101 ACGGCGAAGTGGTCGGAATGGGAGCCCATTTAAAATACGGCGAAGCACAT 150
BSNT_03464___ 148 GCAGAAGTTCATGCCATCCATATGGCTGG-AGCACATGCAGAGGGTGCCG 196
||||||||.||.|||||.||.|||||.|| .|| |||||.||.||.||||
BL01891___rib 151 GCAGAAGTGCACGCCATTCAAATGGCAGGCCGC-CATGCGGAAGGAGCCG 199
BSNT_03464___ 197 ACATTTACGTTACACTCGAACCGTGCAGCCATTACGGAAAAACACCGCCA 246
.|||.||.||.||.||.||||||||||||||||||||.|||||.||.||.
BL01891___rib 200 TCATCTATGTGACGCTTGAACCGTGCAGCCATTACGGCAAAACGCCTCCT 249
BSNT_03464___ 247 TGTGCAGAATTGATTATCAACTCTGGCATCAAAAGAGTGTTCGTGGCGAT 296
||.||.|||.|||||||....||.||..|.||..|.|||.||||||| |
BL01891___rib 250 TGCGCGGAACTGATTATTCGTTCCGGTTTGAAGCGGGTGGTCGTGGC--T 297
BSNT_03464___ 297 GAG--AGATCCTAATCCGCTTGTGGCTGGAAGAGGGATC-AGCATGATCA 343
|.| ||||||.||||||||.||..|.||||||||.||| || ||| |.
BL01891___rib 298 GCGGAAGATCCGAATCCGCTCGTTTCCGGAAGAGGAATCGAG-ATG--CT 344
BSNT_03464___ 344 AAGAA--GCCGGCATTGAGGTAAGGGA---AGGCATCCTGGCAGACCAGG 388
.|||| |||||.||.||||| ||| ||||.|.||...|||.||||
BL01891___rib 345 GAGAAGCGCCGGGATCGAGGT---GGAAACAGGCGTTCTCAAAGAACAGG 391
BSNT_03464___ 389 CGG-AGAGCCTGAATGAAAAATTTCTGCACTTTATGAGGACAGGCCTTCC 437
||| |||| |||||||||||.||..||||.||||||.|||||||||||||
BL01891___rib 392 CGGAAGAG-CTGAATGAAAAGTTCATGCATTTTATGCGGACAGGCCTTCC 440
BSNT_03464___ 438 GTACGTCACGCTAAAAGCGGCTGCCAGCCTTGACGGCAAGATAGCTACCA 487
|||.||.||..|||||||.|||||.||||||||||||||.|..||.|||
BL01891___rib 441 GTATGTGACATTAAAAGCCGCTGCAAGCCTTGACGGCAAAACCGCCACC- 489
BSNT_03464___ 488 GC-ACGGGTGACAGCAAATGGATCACGTCAGAGGCTGCAAGACAGGATGC 536
|| ||.||.||||||||||||||.||.||.||.|..||..|...||||||
BL01891___rib 490 GCAACAGGCGACAGCAAATGGATTACTTCTGAAGAAGCGCGGATGGATGC 539
BSNT_03464___ 537 TCAGCAATACAGGAAAACACACCAAAGCATTTTAGTCGGAGTTGGCACAG 586
|||.||||||.|.||||..|||||..|.||||||||||||...||||||.
BL01891___rib 540 TCACCAATACCGAAAAAACCACCAGTGTATTTTAGTCGGATCGGGCACAA 589
BSNT_03464___ 587 TGAAAGCCGACAATCCGAGCTTAACCTGCAGACTGCC---------GAAT 627
|.|||||.|||.|.||.||.||.||.|||.|.||.|| ||||
BL01891___rib 590 TAAAAGCAGACGACCCAAGTTTGACATGCCGTCTCCCCGGTGCGGTGAAT 639
BSNT_03464___ 628 GTAACAAAACAGCCGGTTCGGGTCATACTTGATAC--CGTACTCTCGATT 675
||||||||.||.|||.|.||.||||| || ||.||.||.
BL01891___rib 640 ---------CAGCCGGTGCGCGTCGTTCTCGATACGACG--CTGTCAATC 678
BSNT_03464___ 676 CCTGAGGACGCT-------AAAGTGATTTGCGATCAAATAGCGCCGACAT 718
| |||| |||||||||...|||.||..||||||.||.|
BL01891___rib 679 C-------CGCTCCAGTCAAAAGTGATTCAGGATAAAGAAGCGCCTACTT 721
BSNT_03464___ 719 GGATTTTTACGACG-GCACGCGCAGACGAGGAAAAG-------------- 753
||||||..|||||| .||.| |||||....||||||
BL01891___rib 722 GGATTTACACGACGTCCAAG-GCAGATCCCGAAAAGGTTCGGAACGTGGA 770
BSNT_03464___ 754 AAAAAACGGCTTTCAGCT------------TTCGGAGTGAACATATTTAC 791
||||.|.||..|.|||.| |.|||| |||||
BL01891___rib 771 AAAAGAAGGTGTGCAGGTAACCGTGCTCGATGCGGA-TGAAC-------- 811
BSNT_03464___ 792 ACTTGAAACCGAGCGCATTCAAATTCCCGATG---TTTTGAAGATCCTAG 838
||||..|.|.|||.| ||.||.| |||.|
BL01891___rib 812 -----------------TTCAGGTGCGCGACGTGCTTCTGCA---CCTTG 841
BSNT_03464___ 839 CGGAAGAAGGTATCATGTCGGTGTATGTGGAAGGCGGTTCAGCTGTTCAC 888
|.||....||.|||...||.||.|.|||.|||||.||..||.|.||||||
BL01891___rib 842 CAGACCGCGGCATCGCTTCAGTCTTTGTCGAAGGAGGCGCAACGGTTCAC 891
BSNT_03464___ 889 GGAAGCTTTGTCAAAGAAGG-CTGTTTTCAAGAAATCATCTTCTATTTTG 937
|.||||||.||||||||||| || .|.|||..||||.|||||||||.|||
BL01891___rib 892 GCAAGCTTCGTCAAAGAAGGACT-CTATCAGCAAATAATCTTCTATCTTG 940
BSNT_03464___ 938 CCCCTAAACTAATCGGAGGAACGCATGCTCCCAGCTTAATCTCCGGTGAA 987
||||||||.||||||||||...|||..||||||||.|..|||||||||||
BL01891___rib 941 CCCCTAAATTAATCGGAGGGCTGCAATCTCCCAGCATCCTCTCCGGTGAA 990
BSNT_03464___ 988 GGTTTTCAATCAATGAAAGATGTCCCCTTATTACAATTCACTGATATAAC 1037
||.||||||||.||||||||||||||||||.|.||||||||....||.||
BL01891___rib 991 GGCTTTCAATCGATGAAAGATGTCCCCTTACTGCAATTCACAACCATTAC 1040
BSNT_03464___ 1038 CCAAATCGGCCGTGATATCAAACTGACGGCAAAACCGACAAAGGAATAG 1086
|.|.|||||||..|||||.||.|||.|.||||.|||||.|||.|||||.
BL01891___rib 1041 CAAGATCGGCCAGGATATAAAGCTGGCAGCAAGACCGATAAAAGAATAA 1089
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